co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT4G32980

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0009583: detection of light stimulus	0.00E+00
2	GO:0071000: response to magnetism	0.00E+00
3	GO:0051246: regulation of protein metabolic process	0.00E+00
4	GO:0009661: chromoplast organization	0.00E+00
5	GO:0019685: photosynthesis, dark reaction	0.00E+00
6	GO:0009658: chloroplast organization	8.19E-07
7	GO:0080005: photosystem stoichiometry adjustment	3.71E-06
8	GO:0010343: singlet oxygen-mediated programmed cell death	3.71E-06
9	GO:0055114: oxidation-reduction process	9.38E-06
10	GO:2001141: regulation of RNA biosynthetic process	2.99E-05
11	GO:0071483: cellular response to blue light	5.37E-05
12	GO:0009902: chloroplast relocation	5.37E-05
13	GO:0016120: carotene biosynthetic process	8.49E-05
14	GO:0010190: cytochrome b6f complex assembly	1.23E-04
15	GO:0009903: chloroplast avoidance movement	1.69E-04
16	GO:0010362: negative regulation of anion channel activity by blue light	2.84E-04
17	GO:0010036: response to boron-containing substance	2.84E-04
18	GO:1902265: abscisic acid homeostasis	2.84E-04
19	GO:0031426: polycistronic mRNA processing	2.84E-04
20	GO:0010322: regulation of isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	2.84E-04
21	GO:0072387: flavin adenine dinucleotide metabolic process	2.84E-04
22	GO:0042371: vitamin K biosynthetic process	2.84E-04
23	GO:0071461: cellular response to redox state	2.84E-04
24	GO:0006430: lysyl-tRNA aminoacylation	2.84E-04
25	GO:0071482: cellular response to light stimulus	3.44E-04
26	GO:0009638: phototropism	4.91E-04
27	GO:1900426: positive regulation of defense response to bacterium	4.91E-04
28	GO:1901529: positive regulation of anion channel activity	6.25E-04
29	GO:0048255: mRNA stabilization	6.25E-04
30	GO:0010617: circadian regulation of calcium ion oscillation	6.25E-04
31	GO:0006898: receptor-mediated endocytosis	6.25E-04
32	GO:0007154: cell communication	6.25E-04
33	GO:0000256: allantoin catabolic process	6.25E-04
34	GO:0099402: plant organ development	6.25E-04
35	GO:1904143: positive regulation of carotenoid biosynthetic process	6.25E-04
36	GO:0080185: effector dependent induction by symbiont of host immune response	6.25E-04
37	GO:0010275: NAD(P)H dehydrogenase complex assembly	6.25E-04
38	GO:0006352: DNA-templated transcription, initiation	6.61E-04
39	GO:0015995: chlorophyll biosynthetic process	6.98E-04
40	GO:0018298: protein-chromophore linkage	7.94E-04
41	GO:0009767: photosynthetic electron transport chain	8.57E-04
42	GO:0005986: sucrose biosynthetic process	8.57E-04
43	GO:0031022: nuclear migration along microfilament	1.01E-03
44	GO:1902448: positive regulation of shade avoidance	1.01E-03
45	GO:0010136: ureide catabolic process	1.01E-03
46	GO:1901672: positive regulation of systemic acquired resistance	1.01E-03
47	GO:0009150: purine ribonucleotide metabolic process	1.01E-03
48	GO:0071836: nectar secretion	1.01E-03
49	GO:0006696: ergosterol biosynthetic process	1.01E-03
50	GO:0044375: regulation of peroxisome size	1.01E-03
51	GO:0009637: response to blue light	1.06E-03
52	GO:0010239: chloroplast mRNA processing	1.45E-03
53	GO:0006809: nitric oxide biosynthetic process	1.45E-03
54	GO:0006145: purine nucleobase catabolic process	1.45E-03
55	GO:0010148: transpiration	1.45E-03
56	GO:1901332: negative regulation of lateral root development	1.45E-03
57	GO:0006882: cellular zinc ion homeostasis	1.45E-03
58	GO:0046713: borate transport	1.45E-03
59	GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly	1.45E-03
60	GO:0046653: tetrahydrofolate metabolic process	1.45E-03
61	GO:0071585: detoxification of cadmium ion	1.94E-03
62	GO:0006552: leucine catabolic process	1.94E-03
63	GO:1902347: response to strigolactone	1.94E-03
64	GO:0010021: amylopectin biosynthetic process	1.94E-03
65	GO:0016117: carotenoid biosynthetic process	2.24E-03
66	GO:0010118: stomatal movement	2.42E-03
67	GO:0000304: response to singlet oxygen	2.48E-03
68	GO:0010117: photoprotection	2.48E-03
69	GO:0046283: anthocyanin-containing compound metabolic process	2.48E-03
70	GO:0009904: chloroplast accumulation movement	2.48E-03
71	GO:0009791: post-embryonic development	3.01E-03
72	GO:0060918: auxin transport	3.06E-03
73	GO:1901371: regulation of leaf morphogenesis	3.06E-03
74	GO:0000741: karyogamy	3.06E-03
75	GO:0010304: PSII associated light-harvesting complex II catabolic process	3.06E-03
76	GO:0006555: methionine metabolic process	3.06E-03
77	GO:0019509: L-methionine salvage from methylthioadenosine	3.68E-03
78	GO:0010244: response to low fluence blue light stimulus by blue low-fluence system	3.68E-03
79	GO:0010189: vitamin E biosynthetic process	3.68E-03
80	GO:0010019: chloroplast-nucleus signaling pathway	3.68E-03
81	GO:0009648: photoperiodism	3.68E-03
82	GO:0010310: regulation of hydrogen peroxide metabolic process	3.68E-03
83	GO:0046777: protein autophosphorylation	3.87E-03
84	GO:0071805: potassium ion transmembrane transport	4.14E-03
85	GO:1900056: negative regulation of leaf senescence	4.34E-03
86	GO:0070370: cellular heat acclimation	4.34E-03
87	GO:0030026: cellular manganese ion homeostasis	4.34E-03
88	GO:0051510: regulation of unidimensional cell growth	4.34E-03
89	GO:0010038: response to metal ion	4.34E-03
90	GO:0030091: protein repair	5.03E-03
91	GO:0009787: regulation of abscisic acid-activated signaling pathway	5.03E-03
92	GO:0009704: de-etiolation	5.03E-03
93	GO:0050821: protein stabilization	5.03E-03
94	GO:0009231: riboflavin biosynthetic process	5.03E-03
95	GO:0006102: isocitrate metabolic process	5.03E-03
96	GO:0016559: peroxisome fission	5.03E-03
97	GO:0048564: photosystem I assembly	5.03E-03
98	GO:0009657: plastid organization	5.77E-03
99	GO:0010100: negative regulation of photomorphogenesis	5.77E-03
100	GO:0009821: alkaloid biosynthetic process	6.54E-03
101	GO:0090305: nucleic acid phosphodiester bond hydrolysis	6.54E-03
102	GO:0034765: regulation of ion transmembrane transport	6.54E-03
103	GO:0048507: meristem development	6.54E-03
104	GO:0046916: cellular transition metal ion homeostasis	6.54E-03
105	GO:0015780: nucleotide-sugar transport	6.54E-03
106	GO:0007623: circadian rhythm	6.71E-03
107	GO:0010380: regulation of chlorophyll biosynthetic process	7.35E-03
108	GO:0008356: asymmetric cell division	7.35E-03
109	GO:0051453: regulation of intracellular pH	7.35E-03
110	GO:0051555: flavonol biosynthetic process	8.19E-03
111	GO:0055062: phosphate ion homeostasis	8.19E-03
112	GO:0009970: cellular response to sulfate starvation	8.19E-03
113	GO:0006995: cellular response to nitrogen starvation	8.19E-03
114	GO:0045036: protein targeting to chloroplast	8.19E-03
115	GO:0006259: DNA metabolic process	8.19E-03
116	GO:0006816: calcium ion transport	9.06E-03
117	GO:0006265: DNA topological change	9.06E-03
118	GO:0043085: positive regulation of catalytic activity	9.06E-03
119	GO:0016485: protein processing	9.06E-03
120	GO:0006810: transport	9.42E-03
121	GO:0006790: sulfur compound metabolic process	9.96E-03
122	GO:0030048: actin filament-based movement	1.09E-02
123	GO:0009785: blue light signaling pathway	1.09E-02
124	GO:0010075: regulation of meristem growth	1.09E-02
125	GO:0009725: response to hormone	1.09E-02
126	GO:0010207: photosystem II assembly	1.19E-02
127	GO:0007015: actin filament organization	1.19E-02
128	GO:0007031: peroxisome organization	1.29E-02
129	GO:0042343: indole glucosinolate metabolic process	1.29E-02
130	GO:0006071: glycerol metabolic process	1.39E-02
131	GO:2000377: regulation of reactive oxygen species metabolic process	1.50E-02
132	GO:0009416: response to light stimulus	1.51E-02
133	GO:0006508: proteolysis	1.52E-02
134	GO:0006418: tRNA aminoacylation for protein translation	1.60E-02
135	GO:0007017: microtubule-based process	1.60E-02
136	GO:0044550: secondary metabolite biosynthetic process	1.71E-02
137	GO:0031408: oxylipin biosynthetic process	1.72E-02
138	GO:0098542: defense response to other organism	1.72E-02
139	GO:0016226: iron-sulfur cluster assembly	1.83E-02
140	GO:0080092: regulation of pollen tube growth	1.83E-02
141	GO:0045454: cell redox homeostasis	1.93E-02
142	GO:0006817: phosphate ion transport	2.07E-02
143	GO:0042391: regulation of membrane potential	2.31E-02
144	GO:0032259: methylation	2.38E-02
145	GO:0006662: glycerol ether metabolic process	2.44E-02
146	GO:0010197: polar nucleus fusion	2.44E-02
147	GO:0010182: sugar mediated signaling pathway	2.44E-02
148	GO:0042752: regulation of circadian rhythm	2.57E-02
149	GO:0007059: chromosome segregation	2.57E-02
150	GO:0009646: response to absence of light	2.57E-02
151	GO:0019252: starch biosynthetic process	2.70E-02
152	GO:0010193: response to ozone	2.83E-02
153	GO:0030163: protein catabolic process	3.11E-02
154	GO:0006464: cellular protein modification process	3.25E-02
155	GO:0010027: thylakoid membrane organization	3.68E-02
156	GO:0010029: regulation of seed germination	3.83E-02
157	GO:0009816: defense response to bacterium, incompatible interaction	3.83E-02
158	GO:0010468: regulation of gene expression	3.94E-02
159	GO:0009414: response to water deprivation	4.11E-02
160	GO:0010411: xyloglucan metabolic process	4.13E-02
161	GO:0006950: response to stress	4.13E-02
162	GO:0006979: response to oxidative stress	4.30E-02
163	GO:0048481: plant ovule development	4.45E-02
164	GO:0008219: cell death	4.45E-02
165	GO:0000160: phosphorelay signal transduction system	4.60E-02
166	GO:0006811: ion transport	4.76E-02
167	GO:0010218: response to far red light	4.76E-02
168	GO:0009631: cold acclimation	4.93E-02
169	GO:0010043: response to zinc ion	4.93E-02
170	GO:0007568: aging	4.93E-02
171	GO:0009910: negative regulation of flower development	4.93E-02

Rank	GO Term	Adjusted P value
1	GO:0009673: low-affinity phosphate transmembrane transporter activity	0.00E+00
2	GO:0008115: sarcosine oxidase activity	0.00E+00
3	GO:0047230: flavonol-3-O-glucoside L-rhamnosyltransferase activity	0.00E+00
4	GO:0046905: phytoene synthase activity	0.00E+00
5	GO:0008935: 1,4-dihydroxy-2-naphthoyl-CoA synthase activity	0.00E+00
6	GO:0035798: 2-alkenal reductase (NADP+) activity	0.00E+00
7	GO:0016767: geranylgeranyl-diphosphate geranylgeranyltransferase activity	0.00E+00
8	GO:0050342: tocopherol O-methyltransferase activity	0.00E+00
9	GO:0045436: lycopene beta cyclase activity	0.00E+00
10	GO:0004848: ureidoglycolate hydrolase activity	1.33E-05
11	GO:0004180: carboxypeptidase activity	1.33E-05
12	GO:0048038: quinone binding	2.38E-05
13	GO:0016851: magnesium chelatase activity	2.99E-05
14	GO:0009882: blue light photoreceptor activity	2.99E-05
15	GO:0016987: sigma factor activity	5.37E-05
16	GO:0001053: plastid sigma factor activity	5.37E-05
17	GO:0004824: lysine-tRNA ligase activity	2.84E-04
18	GO:0015085: calcium ion transmembrane transporter activity	2.84E-04
19	GO:0004719: protein-L-isoaspartate (D-aspartate) O-methyltransferase activity	2.84E-04
20	GO:0080139: borate efflux transmembrane transporter activity	2.84E-04
21	GO:0016783: sulfurtransferase activity	2.84E-04
22	GO:0051996: squalene synthase activity	2.84E-04
23	GO:0004328: formamidase activity	2.84E-04
24	GO:0030941: chloroplast targeting sequence binding	2.84E-04
25	GO:0051741: 2-methyl-6-phytyl-1,4-benzoquinone methyltransferase activity	2.84E-04
26	GO:0016784: 3-mercaptopyruvate sulfurtransferase activity	2.84E-04
27	GO:0004485: methylcrotonoyl-CoA carboxylase activity	2.84E-04
28	GO:0035671: enone reductase activity	2.84E-04
29	GO:0046906: tetrapyrrole binding	2.84E-04
30	GO:0071949: FAD binding	4.15E-04
31	GO:0008237: metallopeptidase activity	4.89E-04
32	GO:0004046: aminoacylase activity	6.25E-04
33	GO:0003988: acetyl-CoA C-acyltransferase activity	6.25E-04
34	GO:0004450: isocitrate dehydrogenase (NADP+) activity	6.25E-04
35	GO:0004310: farnesyl-diphosphate farnesyltransferase activity	6.25E-04
36	GO:0008686: 3,4-dihydroxy-2-butanone-4-phosphate synthase activity	6.25E-04
37	GO:0033201: alpha-1,4-glucan synthase activity	6.25E-04
38	GO:0016491: oxidoreductase activity	7.73E-04
39	GO:0050897: cobalt ion binding	9.50E-04
40	GO:0010309: acireductone dioxygenase [iron(II)-requiring] activity	1.01E-03
41	GO:0010277: chlorophyllide a oxygenase [overall] activity	1.01E-03
42	GO:0046524: sucrose-phosphate synthase activity	1.01E-03
43	GO:0004373: glycogen (starch) synthase activity	1.01E-03
44	GO:0003913: DNA photolyase activity	1.01E-03
45	GO:0032947: protein complex scaffold	1.01E-03
46	GO:0004148: dihydrolipoyl dehydrogenase activity	1.01E-03
47	GO:0003955: NAD(P)H dehydrogenase (quinone) activity	1.01E-03
48	GO:0050307: sucrose-phosphate phosphatase activity	1.01E-03
49	GO:0004075: biotin carboxylase activity	1.01E-03
50	GO:0003935: GTP cyclohydrolase II activity	1.01E-03
51	GO:0004096: catalase activity	1.01E-03
52	GO:0004742: dihydrolipoyllysine-residue acetyltransferase activity	1.45E-03
53	GO:0048027: mRNA 5'-UTR binding	1.45E-03
54	GO:0004792: thiosulfate sulfurtransferase activity	1.45E-03
55	GO:0016811: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides	1.45E-03
56	GO:0046715: borate transmembrane transporter activity	1.45E-03
57	GO:0047627: adenylylsulfatase activity	1.45E-03
58	GO:0004176: ATP-dependent peptidase activity	1.60E-03
59	GO:0042802: identical protein binding	1.86E-03
60	GO:0009011: starch synthase activity	1.94E-03
61	GO:0015368: calcium:cation antiporter activity	1.94E-03
62	GO:0051861: glycolipid binding	1.94E-03
63	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	1.94E-03
64	GO:0015369: calcium:proton antiporter activity	1.94E-03
65	GO:0005452: inorganic anion exchanger activity	2.48E-03
66	GO:0015301: anion:anion antiporter activity	2.48E-03
67	GO:0010181: FMN binding	2.80E-03
68	GO:0004709: MAP kinase kinase kinase activity	3.06E-03
69	GO:0000293: ferric-chelate reductase activity	3.06E-03
70	GO:0022857: transmembrane transporter activity	3.10E-03
71	GO:0016887: ATPase activity	3.27E-03
72	GO:0004518: nuclease activity	3.43E-03
73	GO:0016157: sucrose synthase activity	3.68E-03
74	GO:0005242: inward rectifier potassium channel activity	3.68E-03
75	GO:0005506: iron ion binding	4.31E-03
76	GO:0016621: cinnamoyl-CoA reductase activity	4.34E-03
77	GO:0009881: photoreceptor activity	4.34E-03
78	GO:0019899: enzyme binding	4.34E-03
79	GO:0005338: nucleotide-sugar transmembrane transporter activity	4.34E-03
80	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	4.60E-03
81	GO:0008236: serine-type peptidase activity	5.76E-03
82	GO:0046914: transition metal ion binding	5.77E-03
83	GO:0003918: DNA topoisomerase type II (ATP-hydrolyzing) activity	5.77E-03
84	GO:0008889: glycerophosphodiester phosphodiesterase activity	6.54E-03
85	GO:0000989: transcription factor activity, transcription factor binding	6.54E-03
86	GO:0004222: metalloendopeptidase activity	6.68E-03
87	GO:0016844: strictosidine synthase activity	7.35E-03
88	GO:0005089: Rho guanyl-nucleotide exchange factor activity	9.06E-03
89	GO:0004129: cytochrome-c oxidase activity	9.06E-03
90	GO:0020037: heme binding	1.08E-02
91	GO:0015662: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism	1.09E-02
92	GO:0005315: inorganic phosphate transmembrane transporter activity	1.09E-02
93	GO:0031072: heat shock protein binding	1.09E-02
94	GO:0000155: phosphorelay sensor kinase activity	1.09E-02
95	GO:0042973: glucan endo-1,3-beta-D-glucosidase activity	1.19E-02
96	GO:0003899: DNA-directed 5'-3' RNA polymerase activity	1.34E-02
97	GO:0051536: iron-sulfur cluster binding	1.50E-02
98	GO:0015079: potassium ion transmembrane transporter activity	1.60E-02
99	GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups	1.64E-02
100	GO:0016709: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen	2.13E-02
101	GO:0047134: protein-disulfide reductase activity	2.19E-02
102	GO:0004812: aminoacyl-tRNA ligase activity	2.19E-02
103	GO:0030551: cyclic nucleotide binding	2.31E-02
104	GO:0005249: voltage-gated potassium channel activity	2.31E-02
105	GO:0008080: N-acetyltransferase activity	2.44E-02
106	GO:0019825: oxygen binding	2.55E-02
107	GO:0050662: coenzyme binding	2.57E-02
108	GO:0004791: thioredoxin-disulfide reductase activity	2.57E-02
109	GO:0004872: receptor activity	2.70E-02
110	GO:0004672: protein kinase activity	2.72E-02
111	GO:0016762: xyloglucan:xyloglucosyl transferase activity	2.83E-02
112	GO:0005524: ATP binding	2.85E-02
113	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	3.11E-02
114	GO:0016791: phosphatase activity	3.25E-02
115	GO:0008483: transaminase activity	3.39E-02
116	GO:0004721: phosphoprotein phosphatase activity	4.13E-02
117	GO:0030247: polysaccharide binding	4.13E-02
118	GO:0016798: hydrolase activity, acting on glycosyl bonds	4.13E-02
119	GO:0008168: methyltransferase activity	4.90E-02
120	GO:0030145: manganese ion binding	4.93E-02
121	GO:0000287: magnesium ion binding	4.99E-02

Rank	GO Term	Adjusted P value
1	GO:0009507: chloroplast	6.34E-25
2	GO:0009535: chloroplast thylakoid membrane	5.53E-07
3	GO:0005777: peroxisome	1.30E-05
4	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	1.39E-05
5	GO:0043674: columella	2.84E-04
6	GO:0031972: chloroplast intermembrane space	2.84E-04
7	GO:0045254: pyruvate dehydrogenase complex	6.25E-04
8	GO:0031969: chloroplast membrane	7.67E-04
9	GO:0010007: magnesium chelatase complex	1.01E-03
10	GO:0016605: PML body	1.01E-03
11	GO:0016328: lateral plasma membrane	1.01E-03
12	GO:0042651: thylakoid membrane	1.45E-03
13	GO:0009330: DNA topoisomerase complex (ATP-hydrolyzing)	1.94E-03
14	GO:0030286: dynein complex	1.94E-03
15	GO:0010319: stromule	4.14E-03
16	GO:0031359: integral component of chloroplast outer membrane	4.34E-03
17	GO:0031982: vesicle	5.03E-03
18	GO:0009501: amyloplast	5.03E-03
19	GO:0005779: integral component of peroxisomal membrane	5.77E-03
20	GO:0009514: glyoxysome	5.77E-03
21	GO:0005759: mitochondrial matrix	5.95E-03
22	GO:0009570: chloroplast stroma	6.12E-03
23	GO:0042644: chloroplast nucleoid	6.54E-03
24	GO:0016604: nuclear body	7.35E-03
25	GO:0016324: apical plasma membrane	8.19E-03
26	GO:0005773: vacuole	8.53E-03
27	GO:0005739: mitochondrion	1.18E-02
28	GO:0005875: microtubule associated complex	1.39E-02
29	GO:0009532: plastid stroma	1.72E-02
30	GO:0009706: chloroplast inner membrane	1.91E-02
31	GO:0009534: chloroplast thylakoid	2.00E-02
32	GO:0010287: plastoglobule	2.27E-02
33	GO:0009295: nucleoid	3.39E-02
34	GO:0005778: peroxisomal membrane	3.39E-02
35	GO:0009707: chloroplast outer membrane	4.45E-02