GO Enrichment Analysis of Co-expressed Genes with
AT4G32720
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0071731: response to nitric oxide | 0.00E+00 |
| 2 | GO:0090069: regulation of ribosome biogenesis | 0.00E+00 |
| 3 | GO:0000463: maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | 0.00E+00 |
| 4 | GO:1990481: mRNA pseudouridine synthesis | 0.00E+00 |
| 5 | GO:0000466: maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | 0.00E+00 |
| 6 | GO:0051050: positive regulation of transport | 0.00E+00 |
| 7 | GO:0002191: cap-dependent translational initiation | 0.00E+00 |
| 8 | GO:0043137: DNA replication, removal of RNA primer | 0.00E+00 |
| 9 | GO:0051391: tRNA acetylation | 0.00E+00 |
| 10 | GO:0000495: box H/ACA snoRNA 3'-end processing | 0.00E+00 |
| 11 | GO:0006364: rRNA processing | 2.21E-14 |
| 12 | GO:0000462: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | 4.84E-07 |
| 13 | GO:0042274: ribosomal small subunit biogenesis | 1.63E-05 |
| 14 | GO:0010501: RNA secondary structure unwinding | 5.71E-05 |
| 15 | GO:0042254: ribosome biogenesis | 7.66E-05 |
| 16 | GO:0000028: ribosomal small subunit assembly | 9.72E-05 |
| 17 | GO:0009553: embryo sac development | 1.05E-04 |
| 18 | GO:0000461: endonucleolytic cleavage to generate mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | 1.42E-04 |
| 19 | GO:0000447: endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | 1.42E-04 |
| 20 | GO:1902182: shoot apical meristem development | 1.42E-04 |
| 21 | GO:2000232: regulation of rRNA processing | 1.42E-04 |
| 22 | GO:0043985: histone H4-R3 methylation | 1.42E-04 |
| 23 | GO:0006407: rRNA export from nucleus | 1.42E-04 |
| 24 | GO:0002143: tRNA wobble position uridine thiolation | 1.42E-04 |
| 25 | GO:0031120: snRNA pseudouridine synthesis | 1.42E-04 |
| 26 | GO:0000469: cleavage involved in rRNA processing | 1.42E-04 |
| 27 | GO:0031118: rRNA pseudouridine synthesis | 1.42E-04 |
| 28 | GO:0017183: peptidyl-diphthamide biosynthetic process from peptidyl-histidine | 1.42E-04 |
| 29 | GO:0030490: maturation of SSU-rRNA | 1.42E-04 |
| 30 | GO:0010162: seed dormancy process | 2.13E-04 |
| 31 | GO:0006413: translational initiation | 2.51E-04 |
| 32 | GO:0030187: melatonin biosynthetic process | 3.25E-04 |
| 33 | GO:0009220: pyrimidine ribonucleotide biosynthetic process | 3.25E-04 |
| 34 | GO:0080009: mRNA methylation | 3.25E-04 |
| 35 | GO:0045041: protein import into mitochondrial intermembrane space | 3.25E-04 |
| 36 | GO:0009944: polarity specification of adaxial/abaxial axis | 5.13E-04 |
| 37 | GO:0045604: regulation of epidermal cell differentiation | 5.33E-04 |
| 38 | GO:0006556: S-adenosylmethionine biosynthetic process | 5.33E-04 |
| 39 | GO:0006412: translation | 6.06E-04 |
| 40 | GO:0007005: mitochondrion organization | 6.76E-04 |
| 41 | GO:0009693: ethylene biosynthetic process | 7.35E-04 |
| 42 | GO:0009294: DNA mediated transformation | 7.35E-04 |
| 43 | GO:0007276: gamete generation | 7.63E-04 |
| 44 | GO:0051131: chaperone-mediated protein complex assembly | 7.63E-04 |
| 45 | GO:0009561: megagametogenesis | 7.98E-04 |
| 46 | GO:0046345: abscisic acid catabolic process | 1.01E-03 |
| 47 | GO:0042273: ribosomal large subunit biogenesis | 1.01E-03 |
| 48 | GO:0000460: maturation of 5.8S rRNA | 1.01E-03 |
| 49 | GO:0044205: 'de novo' UMP biosynthetic process | 1.01E-03 |
| 50 | GO:0006479: protein methylation | 1.01E-03 |
| 51 | GO:0000380: alternative mRNA splicing, via spliceosome | 1.28E-03 |
| 52 | GO:0010375: stomatal complex patterning | 1.28E-03 |
| 53 | GO:0000470: maturation of LSU-rRNA | 1.57E-03 |
| 54 | GO:0001731: formation of translation preinitiation complex | 1.57E-03 |
| 55 | GO:0006777: Mo-molybdopterin cofactor biosynthetic process | 1.57E-03 |
| 56 | GO:0042026: protein refolding | 1.88E-03 |
| 57 | GO:0009423: chorismate biosynthetic process | 1.88E-03 |
| 58 | GO:0006458: 'de novo' protein folding | 1.88E-03 |
| 59 | GO:0048444: floral organ morphogenesis | 1.88E-03 |
| 60 | GO:0010077: maintenance of inflorescence meristem identity | 1.88E-03 |
| 61 | GO:0006207: 'de novo' pyrimidine nucleobase biosynthetic process | 2.21E-03 |
| 62 | GO:0010374: stomatal complex development | 2.21E-03 |
| 63 | GO:0045995: regulation of embryonic development | 2.21E-03 |
| 64 | GO:0042255: ribosome assembly | 2.56E-03 |
| 65 | GO:0009880: embryonic pattern specification | 2.93E-03 |
| 66 | GO:0009793: embryo development ending in seed dormancy | 3.21E-03 |
| 67 | GO:2000024: regulation of leaf development | 3.31E-03 |
| 68 | GO:0000387: spliceosomal snRNP assembly | 3.71E-03 |
| 69 | GO:0051555: flavonol biosynthetic process | 4.12E-03 |
| 70 | GO:0000154: rRNA modification | 4.13E-03 |
| 71 | GO:0009073: aromatic amino acid family biosynthetic process | 4.55E-03 |
| 72 | GO:0006352: DNA-templated transcription, initiation | 4.55E-03 |
| 73 | GO:0006457: protein folding | 4.90E-03 |
| 74 | GO:0010582: floral meristem determinacy | 4.99E-03 |
| 75 | GO:0046686: response to cadmium ion | 5.37E-03 |
| 76 | GO:0006108: malate metabolic process | 5.45E-03 |
| 77 | GO:0045892: negative regulation of transcription, DNA-templated | 5.56E-03 |
| 78 | GO:0006446: regulation of translational initiation | 5.92E-03 |
| 79 | GO:0010030: positive regulation of seed germination | 6.41E-03 |
| 80 | GO:0016569: covalent chromatin modification | 6.62E-03 |
| 81 | GO:0032259: methylation | 6.73E-03 |
| 82 | GO:0006406: mRNA export from nucleus | 7.42E-03 |
| 83 | GO:0051302: regulation of cell division | 7.95E-03 |
| 84 | GO:0061077: chaperone-mediated protein folding | 8.49E-03 |
| 85 | GO:0006730: one-carbon metabolic process | 9.05E-03 |
| 86 | GO:0009411: response to UV | 9.62E-03 |
| 87 | GO:0006284: base-excision repair | 1.02E-02 |
| 88 | GO:0070417: cellular response to cold | 1.08E-02 |
| 89 | GO:0000413: protein peptidyl-prolyl isomerization | 1.14E-02 |
| 90 | GO:0006520: cellular amino acid metabolic process | 1.20E-02 |
| 91 | GO:0006342: chromatin silencing | 1.20E-02 |
| 92 | GO:0010150: leaf senescence | 1.22E-02 |
| 93 | GO:0009735: response to cytokinin | 1.32E-02 |
| 94 | GO:0048825: cotyledon development | 1.33E-02 |
| 95 | GO:0071281: cellular response to iron ion | 1.53E-02 |
| 96 | GO:0051301: cell division | 1.64E-02 |
| 97 | GO:0006974: cellular response to DNA damage stimulus | 1.96E-02 |
| 98 | GO:0009651: response to salt stress | 2.02E-02 |
| 99 | GO:0016049: cell growth | 2.11E-02 |
| 100 | GO:0008219: cell death | 2.19E-02 |
| 101 | GO:0048527: lateral root development | 2.42E-02 |
| 102 | GO:0006414: translational elongation | 2.44E-02 |
| 103 | GO:0006099: tricarboxylic acid cycle | 2.67E-02 |
| 104 | GO:0009640: photomorphogenesis | 3.10E-02 |
| 105 | GO:0006260: DNA replication | 3.55E-02 |
| 106 | GO:0009809: lignin biosynthetic process | 3.83E-02 |
| 107 | GO:0006417: regulation of translation | 4.12E-02 |
| 108 | GO:0009909: regulation of flower development | 4.12E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0004164: diphthine synthase activity | 0.00E+00 |
| 2 | GO:0047763: caffeate O-methyltransferase activity | 0.00E+00 |
| 3 | GO:0004107: chorismate synthase activity | 0.00E+00 |
| 4 | GO:0030755: quercetin 3-O-methyltransferase activity | 0.00E+00 |
| 5 | GO:0061605: molybdopterin-synthase adenylyltransferase activity | 0.00E+00 |
| 6 | GO:0030744: luteolin O-methyltransferase activity | 0.00E+00 |
| 7 | GO:0098808: mRNA cap binding | 0.00E+00 |
| 8 | GO:0050355: triphosphatase activity | 0.00E+00 |
| 9 | GO:0004070: aspartate carbamoyltransferase activity | 0.00E+00 |
| 10 | GO:0048256: flap endonuclease activity | 0.00E+00 |
| 11 | GO:0016018: cyclosporin A binding | 0.00E+00 |
| 12 | GO:0033799: myricetin 3'-O-methyltransferase activity | 0.00E+00 |
| 13 | GO:0003963: RNA-3'-phosphate cyclase activity | 0.00E+00 |
| 14 | GO:0061604: molybdopterin-synthase sulfurtransferase activity | 0.00E+00 |
| 15 | GO:0003723: RNA binding | 9.17E-14 |
| 16 | GO:0000166: nucleotide binding | 1.09E-12 |
| 17 | GO:0030515: snoRNA binding | 3.99E-09 |
| 18 | GO:0008026: ATP-dependent helicase activity | 3.66E-07 |
| 19 | GO:0043021: ribonucleoprotein complex binding | 9.95E-07 |
| 20 | GO:0004004: ATP-dependent RNA helicase activity | 9.58E-06 |
| 21 | GO:0004407: histone deacetylase activity | 2.11E-05 |
| 22 | GO:0003899: DNA-directed 5'-3' RNA polymerase activity | 5.77E-05 |
| 23 | GO:0030371: translation repressor activity | 1.42E-04 |
| 24 | GO:0016422: mRNA (2'-O-methyladenosine-N6-)-methyltransferase activity | 1.42E-04 |
| 25 | GO:0008746: NAD(P)+ transhydrogenase activity | 1.42E-04 |
| 26 | GO:0017096: acetylserotonin O-methyltransferase activity | 1.42E-04 |
| 27 | GO:0042134: rRNA primary transcript binding | 1.42E-04 |
| 28 | GO:0003735: structural constituent of ribosome | 1.67E-04 |
| 29 | GO:0001054: RNA polymerase I activity | 2.49E-04 |
| 30 | GO:0044183: protein binding involved in protein folding | 2.49E-04 |
| 31 | GO:0003746: translation elongation factor activity | 3.05E-04 |
| 32 | GO:0016743: carboxyl- or carbamoyltransferase activity | 3.25E-04 |
| 33 | GO:0052640: salicylic acid glucosyltransferase (glucoside-forming) activity | 3.25E-04 |
| 34 | GO:0003743: translation initiation factor activity | 3.61E-04 |
| 35 | GO:0070181: small ribosomal subunit rRNA binding | 5.33E-04 |
| 36 | GO:0017108: 5'-flap endonuclease activity | 5.33E-04 |
| 37 | GO:0004478: methionine adenosyltransferase activity | 5.33E-04 |
| 38 | GO:0008265: Mo-molybdopterin cofactor sulfurase activity | 5.33E-04 |
| 39 | GO:0004792: thiosulfate sulfurtransferase activity | 7.63E-04 |
| 40 | GO:0004527: exonuclease activity | 9.96E-04 |
| 41 | GO:0046527: glucosyltransferase activity | 1.01E-03 |
| 42 | GO:0008409: 5'-3' exonuclease activity | 1.01E-03 |
| 43 | GO:0008641: small protein activating enzyme activity | 1.28E-03 |
| 44 | GO:0003729: mRNA binding | 1.34E-03 |
| 45 | GO:0016615: malate dehydrogenase activity | 1.57E-03 |
| 46 | GO:0030060: L-malate dehydrogenase activity | 1.88E-03 |
| 47 | GO:0008168: methyltransferase activity | 3.15E-03 |
| 48 | GO:0001055: RNA polymerase II activity | 3.71E-03 |
| 49 | GO:0004521: endoribonuclease activity | 4.99E-03 |
| 50 | GO:0001056: RNA polymerase III activity | 4.99E-03 |
| 51 | GO:0000049: tRNA binding | 4.99E-03 |
| 52 | GO:0009982: pseudouridine synthase activity | 5.45E-03 |
| 53 | GO:0003725: double-stranded RNA binding | 5.45E-03 |
| 54 | GO:0005524: ATP binding | 6.74E-03 |
| 55 | GO:0051082: unfolded protein binding | 7.04E-03 |
| 56 | GO:0043130: ubiquitin binding | 7.42E-03 |
| 57 | GO:0019843: rRNA binding | 8.81E-03 |
| 58 | GO:0005515: protein binding | 9.82E-03 |
| 59 | GO:0003676: nucleic acid binding | 9.89E-03 |
| 60 | GO:0008080: N-acetyltransferase activity | 1.20E-02 |
| 61 | GO:0003713: transcription coactivator activity | 1.20E-02 |
| 62 | GO:0016887: ATPase activity | 1.24E-02 |
| 63 | GO:0010181: FMN binding | 1.26E-02 |
| 64 | GO:0004518: nuclease activity | 1.46E-02 |
| 65 | GO:0016597: amino acid binding | 1.74E-02 |
| 66 | GO:0008757: S-adenosylmethionine-dependent methyltransferase activity | 2.11E-02 |
| 67 | GO:0050897: cobalt ion binding | 2.42E-02 |
| 68 | GO:0003697: single-stranded DNA binding | 2.59E-02 |
| 69 | GO:0000987: core promoter proximal region sequence-specific DNA binding | 2.67E-02 |
| 70 | GO:0042393: histone binding | 2.84E-02 |
| 71 | GO:0016787: hydrolase activity | 3.01E-02 |
| 72 | GO:0003755: peptidyl-prolyl cis-trans isomerase activity | 3.46E-02 |
| 73 | GO:0003924: GTPase activity | 3.46E-02 |
| 74 | GO:0004519: endonuclease activity | 3.76E-02 |
| 75 | GO:0003690: double-stranded DNA binding | 3.93E-02 |
| 76 | GO:0080044: quercetin 7-O-glucosyltransferase activity | 4.62E-02 |
| 77 | GO:0080043: quercetin 3-O-glucosyltransferase activity | 4.62E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0070545: PeBoW complex | 0.00E+00 |
| 2 | GO:0034457: Mpp10 complex | 0.00E+00 |
| 3 | GO:0034455: t-UTP complex | 0.00E+00 |
| 4 | GO:0034388: Pwp2p-containing subcomplex of 90S preribosome | 0.00E+00 |
| 5 | GO:0036396: MIS complex | 0.00E+00 |
| 6 | GO:0005730: nucleolus | 1.42E-41 |
| 7 | GO:0032040: small-subunit processome | 2.12E-14 |
| 8 | GO:0005634: nucleus | 1.94E-10 |
| 9 | GO:0080008: Cul4-RING E3 ubiquitin ligase complex | 2.33E-08 |
| 10 | GO:0030687: preribosome, large subunit precursor | 7.93E-07 |
| 11 | GO:0005829: cytosol | 5.50E-05 |
| 12 | GO:0005834: heterotrimeric G-protein complex | 8.85E-05 |
| 13 | GO:0030688: preribosome, small subunit precursor | 1.42E-04 |
| 14 | GO:0030686: 90S preribosome | 1.42E-04 |
| 15 | GO:0005736: DNA-directed RNA polymerase I complex | 1.50E-04 |
| 16 | GO:0005852: eukaryotic translation initiation factor 3 complex | 2.49E-04 |
| 17 | GO:0030130: clathrin coat of trans-Golgi network vesicle | 5.33E-04 |
| 18 | GO:0030132: clathrin coat of coated pit | 5.33E-04 |
| 19 | GO:0015935: small ribosomal subunit | 6.19E-04 |
| 20 | GO:0031429: box H/ACA snoRNP complex | 7.63E-04 |
| 21 | GO:0005654: nucleoplasm | 1.23E-03 |
| 22 | GO:0016282: eukaryotic 43S preinitiation complex | 1.57E-03 |
| 23 | GO:0031428: box C/D snoRNP complex | 1.57E-03 |
| 24 | GO:0005759: mitochondrial matrix | 1.69E-03 |
| 25 | GO:0016363: nuclear matrix | 1.88E-03 |
| 26 | GO:0033290: eukaryotic 48S preinitiation complex | 1.88E-03 |
| 27 | GO:0031597: cytosolic proteasome complex | 1.88E-03 |
| 28 | GO:0034399: nuclear periphery | 2.56E-03 |
| 29 | GO:0009506: plasmodesma | 2.59E-03 |
| 30 | GO:0005840: ribosome | 2.68E-03 |
| 31 | GO:0022627: cytosolic small ribosomal subunit | 2.71E-03 |
| 32 | GO:0005618: cell wall | 3.02E-03 |
| 33 | GO:0008180: COP9 signalosome | 3.31E-03 |
| 34 | GO:0005763: mitochondrial small ribosomal subunit | 3.31E-03 |
| 35 | GO:0005666: DNA-directed RNA polymerase III complex | 3.71E-03 |
| 36 | GO:0015030: Cajal body | 3.71E-03 |
| 37 | GO:0000418: DNA-directed RNA polymerase IV complex | 4.12E-03 |
| 38 | GO:0022625: cytosolic large ribosomal subunit | 4.62E-03 |
| 39 | GO:0005665: DNA-directed RNA polymerase II, core complex | 4.99E-03 |
| 40 | GO:0031307: integral component of mitochondrial outer membrane | 4.99E-03 |
| 41 | GO:0019013: viral nucleocapsid | 5.45E-03 |
| 42 | GO:0000419: DNA-directed RNA polymerase V complex | 6.91E-03 |
| 43 | GO:0009532: plastid stroma | 8.49E-03 |
| 44 | GO:0022626: cytosolic ribosome | 1.39E-02 |
| 45 | GO:0010319: stromule | 1.67E-02 |
| 46 | GO:0005737: cytoplasm | 1.91E-02 |
| 47 | GO:0005774: vacuolar membrane | 2.13E-02 |
| 48 | GO:0015934: large ribosomal subunit | 2.42E-02 |
| 49 | GO:0005681: spliceosomal complex | 4.32E-02 |
| 50 | GO:0005747: mitochondrial respiratory chain complex I | 4.42E-02 |
| 51 | GO:0016607: nuclear speck | 4.42E-02 |