co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT4G32570

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0080127: fruit septum development	0.00E+00
2	GO:0006399: tRNA metabolic process	0.00E+00
3	GO:0090706: specification of plant organ position	0.00E+00
4	GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate	0.00E+00
5	GO:0048507: meristem development	9.49E-05
6	GO:0000476: maturation of 4.5S rRNA	1.04E-04
7	GO:0000967: rRNA 5'-end processing	1.04E-04
8	GO:0042371: vitamin K biosynthetic process	1.04E-04
9	GO:0046167: glycerol-3-phosphate biosynthetic process	1.04E-04
10	GO:0010450: inflorescence meristem growth	1.04E-04
11	GO:0010729: positive regulation of hydrogen peroxide biosynthetic process	1.04E-04
12	GO:0010628: positive regulation of gene expression	2.14E-04
13	GO:0001736: establishment of planar polarity	2.44E-04
14	GO:0034470: ncRNA processing	2.44E-04
15	GO:0006650: glycerophospholipid metabolic process	2.44E-04
16	GO:0006954: inflammatory response	4.05E-04
17	GO:0071398: cellular response to fatty acid	4.05E-04
18	GO:0005977: glycogen metabolic process	4.05E-04
19	GO:0045165: cell fate commitment	4.05E-04
20	GO:2000082: regulation of L-ascorbic acid biosynthetic process	4.05E-04
21	GO:0046168: glycerol-3-phosphate catabolic process	4.05E-04
22	GO:2001141: regulation of RNA biosynthetic process	5.82E-04
23	GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly	5.82E-04
24	GO:0009102: biotin biosynthetic process	5.82E-04
25	GO:0006072: glycerol-3-phosphate metabolic process	5.82E-04
26	GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity	5.82E-04
27	GO:0005975: carbohydrate metabolic process	6.04E-04
28	GO:0015846: polyamine transport	7.73E-04
29	GO:0010021: amylopectin biosynthetic process	7.73E-04
30	GO:0010236: plastoquinone biosynthetic process	9.77E-04
31	GO:1902183: regulation of shoot apical meristem development	9.77E-04
32	GO:0010158: abaxial cell fate specification	9.77E-04
33	GO:0010190: cytochrome b6f complex assembly	1.19E-03
34	GO:0003006: developmental process involved in reproduction	1.19E-03
35	GO:0032973: amino acid export	1.19E-03
36	GO:0042372: phylloquinone biosynthetic process	1.43E-03
37	GO:1901259: chloroplast rRNA processing	1.43E-03
38	GO:0009772: photosynthetic electron transport in photosystem II	1.67E-03
39	GO:0043090: amino acid import	1.67E-03
40	GO:0006605: protein targeting	1.93E-03
41	GO:0010492: maintenance of shoot apical meristem identity	1.93E-03
42	GO:0000105: histidine biosynthetic process	1.93E-03
43	GO:0048564: photosystem I assembly	1.93E-03
44	GO:0010093: specification of floral organ identity	2.21E-03
45	GO:0071482: cellular response to light stimulus	2.21E-03
46	GO:0080144: amino acid homeostasis	2.49E-03
47	GO:2000024: regulation of leaf development	2.49E-03
48	GO:0006098: pentose-phosphate shunt	2.49E-03
49	GO:0015979: photosynthesis	3.01E-03
50	GO:0048829: root cap development	3.10E-03
51	GO:0019684: photosynthesis, light reaction	3.42E-03
52	GO:0009089: lysine biosynthetic process via diaminopimelate	3.42E-03
53	GO:0006352: DNA-templated transcription, initiation	3.42E-03
54	GO:0048765: root hair cell differentiation	3.42E-03
55	GO:0009684: indoleacetic acid biosynthetic process	3.42E-03
56	GO:0009773: photosynthetic electron transport in photosystem I	3.42E-03
57	GO:0010582: floral meristem determinacy	3.75E-03
58	GO:0006094: gluconeogenesis	4.09E-03
59	GO:2000012: regulation of auxin polar transport	4.09E-03
60	GO:0048467: gynoecium development	4.44E-03
61	GO:0009933: meristem structural organization	4.44E-03
62	GO:0019853: L-ascorbic acid biosynthetic process	4.80E-03
63	GO:0010030: positive regulation of seed germination	4.80E-03
64	GO:0000162: tryptophan biosynthetic process	5.18E-03
65	GO:0009944: polarity specification of adaxial/abaxial axis	5.56E-03
66	GO:0003333: amino acid transmembrane transport	6.35E-03
67	GO:0048511: rhythmic process	6.35E-03
68	GO:0071369: cellular response to ethylene stimulus	7.18E-03
69	GO:0006012: galactose metabolic process	7.18E-03
70	GO:0009693: ethylene biosynthetic process	7.18E-03
71	GO:0009306: protein secretion	7.61E-03
72	GO:0006284: base-excision repair	7.61E-03
73	GO:0009789: positive regulation of abscisic acid-activated signaling pathway	8.05E-03
74	GO:0042631: cellular response to water deprivation	8.49E-03
75	GO:0009958: positive gravitropism	8.95E-03
76	GO:0006520: cellular amino acid metabolic process	8.95E-03
77	GO:0010154: fruit development	8.95E-03
78	GO:0007018: microtubule-based movement	9.42E-03
79	GO:0042752: regulation of circadian rhythm	9.42E-03
80	GO:0008380: RNA splicing	9.55E-03
81	GO:0019252: starch biosynthetic process	9.90E-03
82	GO:0008654: phospholipid biosynthetic process	9.90E-03
83	GO:0002229: defense response to oomycetes	1.04E-02
84	GO:0016032: viral process	1.09E-02
85	GO:0032502: developmental process	1.09E-02
86	GO:0009567: double fertilization forming a zygote and endosperm	1.19E-02
87	GO:0009658: chloroplast organization	1.24E-02
88	GO:0001666: response to hypoxia	1.35E-02
89	GO:0010027: thylakoid membrane organization	1.35E-02
90	GO:0016311: dephosphorylation	1.57E-02
91	GO:0009817: defense response to fungus, incompatible interaction	1.62E-02
92	GO:0010311: lateral root formation	1.68E-02
93	GO:0006865: amino acid transport	1.86E-02
94	GO:0009637: response to blue light	1.92E-02
95	GO:0006281: DNA repair	2.28E-02
96	GO:0010114: response to red light	2.30E-02
97	GO:0009926: auxin polar transport	2.30E-02
98	GO:0051707: response to other organism	2.30E-02
99	GO:0006397: mRNA processing	2.38E-02
100	GO:0009664: plant-type cell wall organization	2.70E-02
101	GO:0009909: regulation of flower development	3.06E-02
102	GO:0006096: glycolytic process	3.20E-02
103	GO:0009624: response to nematode	3.66E-02
104	GO:0009058: biosynthetic process	4.45E-02

Rank	GO Term	Adjusted P value
1	GO:0043864: indoleacetamide hydrolase activity	0.00E+00
2	GO:0036361: racemase activity, acting on amino acids and derivatives	0.00E+00
3	GO:0019808: polyamine binding	0.00E+00
4	GO:0016855: racemase and epimerase activity, acting on amino acids and derivatives	0.00E+00
5	GO:0003949: 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase activity	0.00E+00
6	GO:0004076: biotin synthase activity	0.00E+00
7	GO:0010349: L-galactose dehydrogenase activity	0.00E+00
8	GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity	0.00E+00
9	GO:0004045: aminoacyl-tRNA hydrolase activity	9.64E-06
10	GO:0003993: acid phosphatase activity	1.84E-04
11	GO:0004081: bis(5'-nucleosyl)-tetraphosphatase (asymmetrical) activity	2.44E-04
12	GO:0019156: isoamylase activity	2.44E-04
13	GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase	2.44E-04
14	GO:0034432: bis(5'-adenosyl)-pentaphosphatase activity	2.44E-04
15	GO:0004367: glycerol-3-phosphate dehydrogenase [NAD+] activity	4.05E-04
16	GO:0016810: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds	7.73E-04
17	GO:0004659: prenyltransferase activity	7.73E-04
18	GO:0001053: plastid sigma factor activity	7.73E-04
19	GO:0010011: auxin binding	7.73E-04
20	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	7.73E-04
21	GO:0080032: methyl jasmonate esterase activity	7.73E-04
22	GO:0016987: sigma factor activity	7.73E-04
23	GO:0010328: auxin influx transmembrane transporter activity	7.73E-04
24	GO:0008725: DNA-3-methyladenine glycosylase activity	9.77E-04
25	GO:0004040: amidase activity	9.77E-04
26	GO:0004556: alpha-amylase activity	1.19E-03
27	GO:0004462: lactoylglutathione lyase activity	1.19E-03
28	GO:0080030: methyl indole-3-acetate esterase activity	1.19E-03
29	GO:0004332: fructose-bisphosphate aldolase activity	1.19E-03
30	GO:0042578: phosphoric ester hydrolase activity	1.19E-03
31	GO:0008195: phosphatidate phosphatase activity	1.43E-03
32	GO:0004033: aldo-keto reductase (NADP) activity	1.93E-03
33	GO:0009815: 1-aminocyclopropane-1-carboxylate oxidase activity	2.49E-03
34	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	2.84E-03
35	GO:0015020: glucuronosyltransferase activity	3.10E-03
36	GO:0015171: amino acid transmembrane transporter activity	3.62E-03
37	GO:0003887: DNA-directed DNA polymerase activity	5.18E-03
38	GO:0031418: L-ascorbic acid binding	5.56E-03
39	GO:0005528: FK506 binding	5.56E-03
40	GO:0016779: nucleotidyltransferase activity	6.76E-03
41	GO:0008017: microtubule binding	8.37E-03
42	GO:0008536: Ran GTPase binding	8.95E-03
43	GO:0048038: quinone binding	1.04E-02
44	GO:0003684: damaged DNA binding	1.19E-02
45	GO:0016788: hydrolase activity, acting on ester bonds	1.26E-02
46	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	1.62E-02
47	GO:0005096: GTPase activator activity	1.68E-02
48	GO:0004722: protein serine/threonine phosphatase activity	2.02E-02
49	GO:0051539: 4 iron, 4 sulfur cluster binding	2.11E-02
50	GO:0051537: 2 iron, 2 sulfur cluster binding	2.43E-02
51	GO:0043621: protein self-association	2.43E-02
52	GO:0015293: symporter activity	2.50E-02
53	GO:0051287: NAD binding	2.64E-02
54	GO:0003899: DNA-directed 5'-3' RNA polymerase activity	2.84E-02
55	GO:0003777: microtubule motor activity	3.06E-02
56	GO:0080043: quercetin 3-O-glucosyltransferase activity	3.43E-02
57	GO:0080044: quercetin 7-O-glucosyltransferase activity	3.43E-02
58	GO:0004650: polygalacturonase activity	3.43E-02
59	GO:0016874: ligase activity	3.50E-02
60	GO:0008026: ATP-dependent helicase activity	3.81E-02
61	GO:0016758: transferase activity, transferring hexosyl groups	4.21E-02
62	GO:0016829: lyase activity	4.54E-02

Rank	GO Term	Adjusted P value
1	GO:0010368: chloroplast isoamylase complex	0.00E+00
2	GO:0042597: periplasmic space	0.00E+00
3	GO:0009507: chloroplast	3.38E-13
4	GO:0009535: chloroplast thylakoid membrane	1.19E-06
5	GO:0009543: chloroplast thylakoid lumen	7.79E-05
6	GO:0009654: photosystem II oxygen evolving complex	3.76E-04
7	GO:0009331: glycerol-3-phosphate dehydrogenase complex	5.82E-04
8	GO:0009531: secondary cell wall	5.82E-04
9	GO:0042646: plastid nucleoid	5.82E-04
10	GO:0019898: extrinsic component of membrane	7.69E-04
11	GO:0009570: chloroplast stroma	1.14E-03
12	GO:0030529: intracellular ribonucleoprotein complex	1.16E-03
13	GO:0009986: cell surface	1.67E-03
14	GO:0009538: photosystem I reaction center	1.93E-03
15	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	2.49E-03
16	GO:0042644: chloroplast nucleoid	2.49E-03
17	GO:0055028: cortical microtubule	3.10E-03
18	GO:0090404: pollen tube tip	3.42E-03
19	GO:0030095: chloroplast photosystem II	4.44E-03
20	GO:0005871: kinesin complex	8.05E-03
21	GO:0009579: thylakoid	1.09E-02
22	GO:0005874: microtubule	1.49E-02
23	GO:0031977: thylakoid lumen	2.17E-02
24	GO:0010287: plastoglobule	4.13E-02
25	GO:0009534: chloroplast thylakoid	4.85E-02