co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT4G32000

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0010378: temperature compensation of the circadian clock	0.00E+00
2	GO:0090627: plant epidermal cell differentiation	0.00E+00
3	GO:1904526: regulation of microtubule binding	0.00E+00
4	GO:1905177: tracheary element differentiation	0.00E+00
5	GO:0033494: ferulate metabolic process	0.00E+00
6	GO:0009631: cold acclimation	2.28E-05
7	GO:0045926: negative regulation of growth	6.84E-05
8	GO:0009409: response to cold	9.15E-05
9	GO:0032958: inositol phosphate biosynthetic process	1.60E-04
10	GO:0080051: cutin transport	1.60E-04
11	GO:0009609: response to symbiotic bacterium	1.60E-04
12	GO:0097298: regulation of nucleus size	1.60E-04
13	GO:0009737: response to abscisic acid	3.23E-04
14	GO:0015908: fatty acid transport	3.65E-04
15	GO:0051170: nuclear import	3.65E-04
16	GO:0015709: thiosulfate transport	3.65E-04
17	GO:0071422: succinate transmembrane transport	3.65E-04
18	GO:0071712: ER-associated misfolded protein catabolic process	3.65E-04
19	GO:0032527: protein exit from endoplasmic reticulum	3.65E-04
20	GO:0010143: cutin biosynthetic process	4.38E-04
21	GO:0010025: wax biosynthetic process	5.47E-04
22	GO:0032940: secretion by cell	5.97E-04
23	GO:0010623: programmed cell death involved in cell development	5.97E-04
24	GO:0006020: inositol metabolic process	8.53E-04
25	GO:1901000: regulation of response to salt stress	8.53E-04
26	GO:0015729: oxaloacetate transport	8.53E-04
27	GO:0030100: regulation of endocytosis	8.53E-04
28	GO:0070417: cellular response to cold	1.01E-03
29	GO:0042631: cellular response to water deprivation	1.09E-03
30	GO:0006552: leucine catabolic process	1.13E-03
31	GO:0010508: positive regulation of autophagy	1.13E-03
32	GO:0071585: detoxification of cadmium ion	1.13E-03
33	GO:0042991: transcription factor import into nucleus	1.13E-03
34	GO:0010222: stem vascular tissue pattern formation	1.13E-03
35	GO:0046345: abscisic acid catabolic process	1.13E-03
36	GO:0051365: cellular response to potassium ion starvation	1.13E-03
37	GO:0022622: root system development	1.13E-03
38	GO:1901409: positive regulation of phosphorylation of RNA polymerase II C-terminal domain	1.13E-03
39	GO:0048825: cotyledon development	1.35E-03
40	GO:0071423: malate transmembrane transport	1.43E-03
41	GO:0009823: cytokinin catabolic process	1.43E-03
42	GO:0006656: phosphatidylcholine biosynthetic process	1.43E-03
43	GO:0006461: protein complex assembly	1.43E-03
44	GO:0048578: positive regulation of long-day photoperiodism, flowering	1.43E-03
45	GO:0000302: response to reactive oxygen species	1.44E-03
46	GO:0035435: phosphate ion transmembrane transport	1.76E-03
47	GO:0009913: epidermal cell differentiation	1.76E-03
48	GO:0047484: regulation of response to osmotic stress	1.76E-03
49	GO:0006574: valine catabolic process	1.76E-03
50	GO:0045737: positive regulation of cyclin-dependent protein serine/threonine kinase activity	2.11E-03
51	GO:0009082: branched-chain amino acid biosynthetic process	2.11E-03
52	GO:0009861: jasmonic acid and ethylene-dependent systemic resistance	2.11E-03
53	GO:0010555: response to mannitol	2.11E-03
54	GO:0071470: cellular response to osmotic stress	2.11E-03
55	GO:0007623: circadian rhythm	2.37E-03
56	GO:0008272: sulfate transport	2.48E-03
57	GO:0050829: defense response to Gram-negative bacterium	2.48E-03
58	GO:1902074: response to salt	2.48E-03
59	GO:0010103: stomatal complex morphogenesis	2.48E-03
60	GO:0032880: regulation of protein localization	2.48E-03
61	GO:0006470: protein dephosphorylation	2.80E-03
62	GO:0009819: drought recovery	2.88E-03
63	GO:0009690: cytokinin metabolic process	2.88E-03
64	GO:0009704: de-etiolation	2.88E-03
65	GO:0008610: lipid biosynthetic process	2.88E-03
66	GO:0035265: organ growth	2.88E-03
67	GO:0010218: response to far red light	2.96E-03
68	GO:0006997: nucleus organization	3.29E-03
69	GO:0006783: heme biosynthetic process	3.72E-03
70	GO:0006098: pentose-phosphate shunt	3.72E-03
71	GO:0042761: very long-chain fatty acid biosynthetic process	4.17E-03
72	GO:2000280: regulation of root development	4.17E-03
73	GO:0009640: photomorphogenesis	4.37E-03
74	GO:0010114: response to red light	4.37E-03
75	GO:0006782: protoporphyrinogen IX biosynthetic process	4.64E-03
76	GO:0006949: syncytium formation	4.64E-03
77	GO:0042538: hyperosmotic salinity response	5.48E-03
78	GO:0016024: CDP-diacylglycerol biosynthetic process	5.62E-03
79	GO:0045037: protein import into chloroplast stroma	5.62E-03
80	GO:0005983: starch catabolic process	5.62E-03
81	GO:0009585: red, far-red light phototransduction	5.88E-03
82	GO:0010102: lateral root morphogenesis	6.14E-03
83	GO:0010588: cotyledon vascular tissue pattern formation	6.14E-03
84	GO:2000012: regulation of auxin polar transport	6.14E-03
85	GO:0043086: negative regulation of catalytic activity	6.95E-03
86	GO:0009833: plant-type primary cell wall biogenesis	7.79E-03
87	GO:0042545: cell wall modification	8.12E-03
88	GO:0030150: protein import into mitochondrial matrix	8.38E-03
89	GO:0007017: microtubule-based process	8.97E-03
90	GO:0048511: rhythmic process	9.59E-03
91	GO:0009269: response to desiccation	9.59E-03
92	GO:0001944: vasculature development	1.09E-02
93	GO:0009831: plant-type cell wall modification involved in multidimensional cell growth	1.09E-02
94	GO:0009058: biosynthetic process	1.11E-02
95	GO:0010089: xylem development	1.15E-02
96	GO:0009414: response to water deprivation	1.21E-02
97	GO:0008284: positive regulation of cell proliferation	1.22E-02
98	GO:0009789: positive regulation of abscisic acid-activated signaling pathway	1.22E-02
99	GO:0000413: protein peptidyl-prolyl isomerization	1.29E-02
100	GO:0000226: microtubule cytoskeleton organization	1.29E-02
101	GO:0009958: positive gravitropism	1.36E-02
102	GO:0010268: brassinosteroid homeostasis	1.36E-02
103	GO:0042752: regulation of circadian rhythm	1.43E-02
104	GO:0010150: leaf senescence	1.45E-02
105	GO:0045490: pectin catabolic process	1.45E-02
106	GO:0009749: response to glucose	1.50E-02
107	GO:0019252: starch biosynthetic process	1.50E-02
108	GO:0016132: brassinosteroid biosynthetic process	1.58E-02
109	GO:0009739: response to gibberellin	1.62E-02
110	GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process	1.62E-02
111	GO:0010583: response to cyclopentenone	1.65E-02
112	GO:0015031: protein transport	1.80E-02
113	GO:0009639: response to red or far red light	1.81E-02
114	GO:0009828: plant-type cell wall loosening	1.81E-02
115	GO:0016125: sterol metabolic process	1.81E-02
116	GO:0019760: glucosinolate metabolic process	1.81E-02
117	GO:0009611: response to wounding	1.89E-02
118	GO:0006974: cellular response to DNA damage stimulus	2.22E-02
119	GO:0015995: chlorophyll biosynthetic process	2.30E-02
120	GO:0006888: ER to Golgi vesicle-mediated transport	2.30E-02
121	GO:0030244: cellulose biosynthetic process	2.47E-02
122	GO:0009817: defense response to fungus, incompatible interaction	2.47E-02
123	GO:0009832: plant-type cell wall biogenesis	2.56E-02
124	GO:0000160: phosphorelay signal transduction system	2.56E-02
125	GO:0009651: response to salt stress	2.71E-02
126	GO:0048527: lateral root development	2.74E-02
127	GO:0007568: aging	2.74E-02
128	GO:0080167: response to karrikin	2.79E-02
129	GO:0045087: innate immune response	2.93E-02
130	GO:0016051: carbohydrate biosynthetic process	2.93E-02
131	GO:0009637: response to blue light	2.93E-02
132	GO:0006839: mitochondrial transport	3.21E-02
133	GO:0006631: fatty acid metabolic process	3.31E-02
134	GO:0045892: negative regulation of transcription, DNA-templated	3.39E-02
135	GO:0042542: response to hydrogen peroxide	3.41E-02
136	GO:0009744: response to sucrose	3.51E-02
137	GO:0000209: protein polyubiquitination	3.61E-02
138	GO:0009644: response to high light intensity	3.71E-02
139	GO:0016042: lipid catabolic process	3.99E-02
140	GO:0042787: protein ubiquitination involved in ubiquitin-dependent protein catabolic process	4.02E-02
141	GO:0009664: plant-type cell wall organization	4.12E-02
142	GO:0009736: cytokinin-activated signaling pathway	4.34E-02
143	GO:0071555: cell wall organization	4.42E-02
144	GO:0008152: metabolic process	4.52E-02
145	GO:0048367: shoot system development	4.99E-02

Rank	GO Term	Adjusted P value
1	GO:0051060: pullulanase activity	0.00E+00
2	GO:0102193: protein-ribulosamine 3-kinase activity	0.00E+00
3	GO:0010303: limit dextrinase activity	0.00E+00
4	GO:0005534: galactose binding	1.60E-04
5	GO:0004853: uroporphyrinogen decarboxylase activity	1.60E-04
6	GO:0015245: fatty acid transporter activity	1.60E-04
7	GO:0033857: diphosphoinositol-pentakisphosphate kinase activity	1.60E-04
8	GO:0000829: inositol heptakisphosphate kinase activity	1.60E-04
9	GO:0004105: choline-phosphate cytidylyltransferase activity	1.60E-04
10	GO:0000828: inositol hexakisphosphate kinase activity	1.60E-04
11	GO:0015117: thiosulfate transmembrane transporter activity	3.65E-04
12	GO:1901677: phosphate transmembrane transporter activity	3.65E-04
13	GO:0044390: ubiquitin-like protein conjugating enzyme binding	3.65E-04
14	GO:0015141: succinate transmembrane transporter activity	5.97E-04
15	GO:0010295: (+)-abscisic acid 8'-hydroxylase activity	5.97E-04
16	GO:0005310: dicarboxylic acid transmembrane transporter activity	5.97E-04
17	GO:0050734: hydroxycinnamoyltransferase activity	5.97E-04
18	GO:0015131: oxaloacetate transmembrane transporter activity	8.53E-04
19	GO:0003883: CTP synthase activity	8.53E-04
20	GO:0052656: L-isoleucine transaminase activity	8.53E-04
21	GO:0052654: L-leucine transaminase activity	8.53E-04
22	GO:0052655: L-valine transaminase activity	8.53E-04
23	GO:1904264: ubiquitin protein ligase activity involved in ERAD pathway	1.13E-03
24	GO:0004084: branched-chain-amino-acid transaminase activity	1.13E-03
25	GO:0019139: cytokinin dehydrogenase activity	1.43E-03
26	GO:0004366: glycerol-3-phosphate O-acyltransferase activity	1.76E-03
27	GO:0004556: alpha-amylase activity	1.76E-03
28	GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity	1.76E-03
29	GO:0046910: pectinesterase inhibitor activity	2.17E-03
30	GO:0015140: malate transmembrane transporter activity	2.48E-03
31	GO:0004620: phospholipase activity	2.48E-03
32	GO:0015288: porin activity	2.88E-03
33	GO:0016209: antioxidant activity	2.88E-03
34	GO:0015020: glucuronosyltransferase activity	4.64E-03
35	GO:0047372: acylglycerol lipase activity	5.12E-03
36	GO:0015116: sulfate transmembrane transporter activity	5.62E-03
37	GO:0061630: ubiquitin protein ligase activity	5.76E-03
38	GO:0015266: protein channel activity	6.14E-03
39	GO:0045330: aspartyl esterase activity	6.51E-03
40	GO:0008083: growth factor activity	6.67E-03
41	GO:0042973: glucan endo-1,3-beta-D-glucosidase activity	6.67E-03
42	GO:0004722: protein serine/threonine phosphatase activity	7.64E-03
43	GO:0016874: ligase activity	7.88E-03
44	GO:0030599: pectinesterase activity	7.88E-03
45	GO:0003924: GTPase activity	8.87E-03
46	GO:0016760: cellulose synthase (UDP-forming) activity	1.09E-02
47	GO:0016538: cyclin-dependent protein serine/threonine kinase regulator activity	1.36E-02
48	GO:0000156: phosphorelay response regulator activity	1.73E-02
49	GO:0016791: phosphatase activity	1.81E-02
50	GO:0016759: cellulose synthase activity	1.81E-02
51	GO:0042626: ATPase activity, coupled to transmembrane movement of substances	1.85E-02
52	GO:0005200: structural constituent of cytoskeleton	1.89E-02
53	GO:0016597: amino acid binding	1.97E-02
54	GO:0008375: acetylglucosaminyltransferase activity	2.22E-02
55	GO:0016788: hydrolase activity, acting on ester bonds	2.29E-02
56	GO:0016740: transferase activity	2.36E-02
57	GO:0008757: S-adenosylmethionine-dependent methyltransferase activity	2.39E-02
58	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	2.47E-02
59	GO:0005096: GTPase activator activity	2.56E-02
60	GO:0004693: cyclin-dependent protein serine/threonine kinase activity	2.65E-02
61	GO:0016614: oxidoreductase activity, acting on CH-OH group of donors	2.74E-02
62	GO:0052689: carboxylic ester hydrolase activity	3.08E-02
63	GO:0005525: GTP binding	3.42E-02
64	GO:0005198: structural molecule activity	3.81E-02
65	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	3.91E-02
66	GO:0003690: double-stranded DNA binding	4.44E-02
67	GO:0015171: amino acid transmembrane transporter activity	4.66E-02
68	GO:0031625: ubiquitin protein ligase binding	4.66E-02
69	GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups	4.99E-02

Rank	GO Term	Adjusted P value
1	GO:0034426: etioplast membrane	0.00E+00
2	GO:0031357: integral component of chloroplast inner membrane	1.25E-06
3	GO:0009897: external side of plasma membrane	5.97E-04
4	GO:0005652: nuclear lamina	5.97E-04
5	GO:0036513: Derlin-1 retrotranslocation complex	8.53E-04
6	GO:0009527: plastid outer membrane	1.13E-03
7	GO:0005798: Golgi-associated vesicle	1.76E-03
8	GO:0030127: COPII vesicle coat	1.76E-03
9	GO:0000793: condensed chromosome	1.76E-03
10	GO:0000794: condensed nuclear chromosome	2.48E-03
11	GO:0034399: nuclear periphery	2.88E-03
12	GO:0031305: integral component of mitochondrial inner membrane	2.88E-03
13	GO:0046930: pore complex	3.29E-03
14	GO:0000307: cyclin-dependent protein kinase holoenzyme complex	3.29E-03
15	GO:0045298: tubulin complex	3.72E-03
16	GO:0009941: chloroplast envelope	6.39E-03
17	GO:0005769: early endosome	7.79E-03
18	GO:0005875: microtubule associated complex	7.79E-03
19	GO:0010287: plastoglobule	9.93E-03
20	GO:0005654: nucleoplasm	1.02E-02
21	GO:0005744: mitochondrial inner membrane presequence translocase complex	1.15E-02
22	GO:0005618: cell wall	1.29E-02
23	GO:0031965: nuclear membrane	1.50E-02
24	GO:0005615: extracellular space	1.62E-02
25	GO:0071944: cell periphery	1.73E-02
26	GO:0009505: plant-type cell wall	1.76E-02
27	GO:0046658: anchored component of plasma membrane	1.92E-02
28	GO:0009534: chloroplast thylakoid	2.33E-02
29	GO:0009707: chloroplast outer membrane	2.47E-02
30	GO:0031977: thylakoid lumen	3.31E-02
31	GO:0005622: intracellular	3.76E-02
32	GO:0005886: plasma membrane	3.87E-02
33	GO:0009535: chloroplast thylakoid membrane	4.13E-02
34	GO:0016607: nuclear speck	4.99E-02