co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT4G31980

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:2000636: positive regulation of primary miRNA processing	0.00E+00
2	GO:0010046: response to mycotoxin	0.00E+00
3	GO:0071629: ubiquitin-dependent catabolism of misfolded proteins by cytoplasm-associated proteasome	0.00E+00
4	GO:1905499: trichome papilla formation	0.00E+00
5	GO:0019593: mannitol biosynthetic process	0.00E+00
6	GO:0071289: cellular response to nickel ion	0.00E+00
7	GO:2000630: positive regulation of miRNA metabolic process	0.00E+00
8	GO:0006862: nucleotide transport	0.00E+00
9	GO:0080050: regulation of seed development	0.00E+00
10	GO:0042353: fucose biosynthetic process	0.00E+00
11	GO:0007141: male meiosis I	0.00E+00
12	GO:0032497: detection of lipopolysaccharide	0.00E+00
13	GO:0019481: L-alanine catabolic process, by transamination	0.00E+00
14	GO:0010200: response to chitin	1.17E-10
15	GO:0042335: cuticle development	1.98E-05
16	GO:0048544: recognition of pollen	2.69E-05
17	GO:0009873: ethylene-activated signaling pathway	3.72E-05
18	GO:0002679: respiratory burst involved in defense response	3.81E-05
19	GO:0006468: protein phosphorylation	7.75E-05
20	GO:0006665: sphingolipid metabolic process	1.07E-04
21	GO:0010337: regulation of salicylic acid metabolic process	1.54E-04
22	GO:0006952: defense response	1.65E-04
23	GO:0009864: induced systemic resistance, jasmonic acid mediated signaling pathway	2.73E-04
24	GO:0006955: immune response	2.73E-04
25	GO:0033481: galacturonate biosynthetic process	3.27E-04
26	GO:0034628: 'de novo' NAD biosynthetic process from aspartate	3.27E-04
27	GO:0051180: vitamin transport	3.27E-04
28	GO:0030974: thiamine pyrophosphate transport	3.27E-04
29	GO:0050691: regulation of defense response to virus by host	3.27E-04
30	GO:2000070: regulation of response to water deprivation	3.44E-04
31	GO:0051865: protein autoubiquitination	5.07E-04
32	GO:0071577: zinc II ion transmembrane transport	5.99E-04
33	GO:0006904: vesicle docking involved in exocytosis	6.32E-04
34	GO:0031407: oxylipin metabolic process	7.13E-04
35	GO:0042754: negative regulation of circadian rhythm	7.13E-04
36	GO:0010289: homogalacturonan biosynthetic process	7.13E-04
37	GO:0010372: positive regulation of gibberellin biosynthetic process	7.13E-04
38	GO:2000030: regulation of response to red or far red light	7.13E-04
39	GO:0006898: receptor-mediated endocytosis	7.13E-04
40	GO:0015893: drug transport	7.13E-04
41	GO:0052542: defense response by callose deposition	7.13E-04
42	GO:0010253: UDP-rhamnose biosynthetic process	1.16E-03
43	GO:0051176: positive regulation of sulfur metabolic process	1.16E-03
44	GO:0045793: positive regulation of cell size	1.16E-03
45	GO:0010325: raffinose family oligosaccharide biosynthetic process	1.16E-03
46	GO:0080168: abscisic acid transport	1.16E-03
47	GO:0016045: detection of bacterium	1.16E-03
48	GO:0010359: regulation of anion channel activity	1.16E-03
49	GO:0070588: calcium ion transmembrane transport	1.31E-03
50	GO:0010025: wax biosynthetic process	1.45E-03
51	GO:0009863: salicylic acid mediated signaling pathway	1.61E-03
52	GO:0030100: regulation of endocytosis	1.66E-03
53	GO:0009399: nitrogen fixation	1.66E-03
54	GO:0033014: tetrapyrrole biosynthetic process	1.66E-03
55	GO:0015696: ammonium transport	1.66E-03
56	GO:0006887: exocytosis	1.71E-03
57	GO:0016310: phosphorylation	2.04E-03
58	GO:0007166: cell surface receptor signaling pathway	2.17E-03
59	GO:1902347: response to strigolactone	2.23E-03
60	GO:0009694: jasmonic acid metabolic process	2.23E-03
61	GO:0072488: ammonium transmembrane transport	2.23E-03
62	GO:0006536: glutamate metabolic process	2.23E-03
63	GO:0042991: transcription factor import into nucleus	2.23E-03
64	GO:0010091: trichome branching	2.53E-03
65	GO:0045038: protein import into chloroplast thylakoid membrane	2.84E-03
66	GO:0048497: maintenance of floral organ identity	2.84E-03
67	GO:0009435: NAD biosynthetic process	2.84E-03
68	GO:0009164: nucleoside catabolic process	2.84E-03
69	GO:0009823: cytokinin catabolic process	2.84E-03
70	GO:0045489: pectin biosynthetic process	3.19E-03
71	GO:0010256: endomembrane system organization	3.51E-03
72	GO:0048232: male gamete generation	3.51E-03
73	GO:0006796: phosphate-containing compound metabolic process	3.51E-03
74	GO:0009737: response to abscisic acid	3.98E-03
75	GO:0098655: cation transmembrane transport	4.23E-03
76	GO:0080113: regulation of seed growth	4.23E-03
77	GO:0009861: jasmonic acid and ethylene-dependent systemic resistance	4.23E-03
78	GO:0052033: pathogen-associated molecular pattern dependent induction by symbiont of host innate immune response	4.23E-03
79	GO:0030497: fatty acid elongation	4.99E-03
80	GO:0007205: protein kinase C-activating G-protein coupled receptor signaling pathway	4.99E-03
81	GO:0050829: defense response to Gram-negative bacterium	4.99E-03
82	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	5.02E-03
83	GO:0045010: actin nucleation	5.80E-03
84	GO:0048658: anther wall tapetum development	5.80E-03
85	GO:0007155: cell adhesion	5.80E-03
86	GO:0006402: mRNA catabolic process	5.80E-03
87	GO:1900150: regulation of defense response to fungus	5.80E-03
88	GO:0009690: cytokinin metabolic process	5.80E-03
89	GO:0009611: response to wounding	6.18E-03
90	GO:0009699: phenylpropanoid biosynthetic process	6.65E-03
91	GO:0009932: cell tip growth	6.65E-03
92	GO:0009827: plant-type cell wall modification	6.65E-03
93	GO:0042742: defense response to bacterium	6.66E-03
94	GO:0048573: photoperiodism, flowering	6.71E-03
95	GO:0008219: cell death	7.44E-03
96	GO:0006783: heme biosynthetic process	7.54E-03
97	GO:0009060: aerobic respiration	7.54E-03
98	GO:0098656: anion transmembrane transport	7.54E-03
99	GO:0046685: response to arsenic-containing substance	7.54E-03
100	GO:0006351: transcription, DNA-templated	7.89E-03
101	GO:0006779: porphyrin-containing compound biosynthetic process	8.48E-03
102	GO:0048268: clathrin coat assembly	8.48E-03
103	GO:0042761: very long-chain fatty acid biosynthetic process	8.48E-03
104	GO:2000280: regulation of root development	8.48E-03
105	GO:0006457: protein folding	9.33E-03
106	GO:0048829: root cap development	9.45E-03
107	GO:0010192: mucilage biosynthetic process	9.45E-03
108	GO:0006782: protoporphyrinogen IX biosynthetic process	9.45E-03
109	GO:0051026: chiasma assembly	9.45E-03
110	GO:0019538: protein metabolic process	9.45E-03
111	GO:0010015: root morphogenesis	1.05E-02
112	GO:0000038: very long-chain fatty acid metabolic process	1.05E-02
113	GO:0052544: defense response by callose deposition in cell wall	1.05E-02
114	GO:0006839: mitochondrial transport	1.08E-02
115	GO:0006897: endocytosis	1.12E-02
116	GO:0010105: negative regulation of ethylene-activated signaling pathway	1.15E-02
117	GO:0071365: cellular response to auxin stimulus	1.15E-02
118	GO:0000266: mitochondrial fission	1.15E-02
119	GO:0009409: response to cold	1.20E-02
120	GO:0055046: microgametogenesis	1.26E-02
121	GO:0005986: sucrose biosynthetic process	1.26E-02
122	GO:0006829: zinc II ion transport	1.26E-02
123	GO:0034605: cellular response to heat	1.37E-02
124	GO:0002237: response to molecule of bacterial origin	1.37E-02
125	GO:0071732: cellular response to nitric oxide	1.49E-02
126	GO:0009969: xyloglucan biosynthetic process	1.49E-02
127	GO:0009225: nucleotide-sugar metabolic process	1.49E-02
128	GO:0080188: RNA-directed DNA methylation	1.49E-02
129	GO:0046686: response to cadmium ion	1.57E-02
130	GO:0010224: response to UV-B	1.71E-02
131	GO:2000377: regulation of reactive oxygen species metabolic process	1.73E-02
132	GO:0009695: jasmonic acid biosynthetic process	1.86E-02
133	GO:0016998: cell wall macromolecule catabolic process	1.99E-02
134	GO:0061077: chaperone-mediated protein folding	1.99E-02
135	GO:0031408: oxylipin biosynthetic process	1.99E-02
136	GO:0009626: plant-type hypersensitive response	2.08E-02
137	GO:0031348: negative regulation of defense response	2.12E-02
138	GO:0030245: cellulose catabolic process	2.12E-02
139	GO:0010017: red or far-red light signaling pathway	2.12E-02
140	GO:0016226: iron-sulfur cluster assembly	2.12E-02
141	GO:0007131: reciprocal meiotic recombination	2.12E-02
142	GO:0035428: hexose transmembrane transport	2.12E-02
143	GO:0030433: ubiquitin-dependent ERAD pathway	2.12E-02
144	GO:0009620: response to fungus	2.15E-02
145	GO:0046777: protein autophosphorylation	2.17E-02
146	GO:0071369: cellular response to ethylene stimulus	2.25E-02
147	GO:0071215: cellular response to abscisic acid stimulus	2.25E-02
148	GO:0009686: gibberellin biosynthetic process	2.25E-02
149	GO:0009624: response to nematode	2.35E-02
150	GO:0009306: protein secretion	2.39E-02
151	GO:0010089: xylem development	2.39E-02
152	GO:0010214: seed coat development	2.39E-02
153	GO:0006817: phosphate ion transport	2.39E-02
154	GO:0006355: regulation of transcription, DNA-templated	2.46E-02
155	GO:0000271: polysaccharide biosynthetic process	2.68E-02
156	GO:0042631: cellular response to water deprivation	2.68E-02
157	GO:0046323: glucose import	2.82E-02
158	GO:0009960: endosperm development	2.82E-02
159	GO:0009749: response to glucose	3.12E-02
160	GO:0009845: seed germination	3.18E-02
161	GO:0009751: response to salicylic acid	3.19E-02
162	GO:0010193: response to ozone	3.28E-02
163	GO:0031047: gene silencing by RNA	3.44E-02
164	GO:1901657: glycosyl compound metabolic process	3.60E-02
165	GO:0071281: cellular response to iron ion	3.60E-02
166	GO:0010090: trichome morphogenesis	3.60E-02
167	GO:0006633: fatty acid biosynthetic process	3.69E-02
168	GO:0006310: DNA recombination	3.76E-02
169	GO:0010150: leaf senescence	4.05E-02
170	GO:0007623: circadian rhythm	4.05E-02
171	GO:0009615: response to virus	4.26E-02
172	GO:0001666: response to hypoxia	4.26E-02
173	GO:0009788: negative regulation of abscisic acid-activated signaling pathway	4.43E-02
174	GO:0009816: defense response to bacterium, incompatible interaction	4.43E-02
175	GO:0009627: systemic acquired resistance	4.61E-02
176	GO:0015995: chlorophyll biosynthetic process	4.78E-02
177	GO:0010468: regulation of gene expression	4.82E-02

Rank	GO Term	Adjusted P value
1	GO:0080123: jasmonate-amino synthetase activity	0.00E+00
2	GO:0032442: phenylcoumaran benzylic ether reductase activity	0.00E+00
3	GO:0010857: calcium-dependent protein kinase activity	0.00E+00
4	GO:0015215: nucleotide transmembrane transporter activity	0.00E+00
5	GO:0070566: adenylyltransferase activity	0.00E+00
6	GO:0008987: quinolinate synthetase A activity	0.00E+00
7	GO:0005522: profilin binding	0.00E+00
8	GO:0019166: trans-2-enoyl-CoA reductase (NADPH) activity	0.00E+00
9	GO:0009922: fatty acid elongase activity	1.21E-06
10	GO:0016301: kinase activity	5.98E-06
11	GO:0004674: protein serine/threonine kinase activity	9.95E-05
12	GO:0005524: ATP binding	2.30E-04
13	GO:0010489: UDP-4-keto-6-deoxy-glucose-3,5-epimerase activity	3.27E-04
14	GO:0090422: thiamine pyrophosphate transporter activity	3.27E-04
15	GO:0015085: calcium ion transmembrane transporter activity	3.27E-04
16	GO:0010490: UDP-4-keto-rhamnose-4-keto-reductase activity	3.27E-04
17	GO:0015398: high-affinity secondary active ammonium transmembrane transporter activity	3.27E-04
18	GO:0090440: abscisic acid transporter activity	3.27E-04
19	GO:0016629: 12-oxophytodienoate reductase activity	7.13E-04
20	GO:0004103: choline kinase activity	7.13E-04
21	GO:0008883: glutamyl-tRNA reductase activity	7.13E-04
22	GO:0001047: core promoter binding	7.13E-04
23	GO:0017040: ceramidase activity	7.13E-04
24	GO:0008460: dTDP-glucose 4,6-dehydratase activity	7.13E-04
25	GO:0010280: UDP-L-rhamnose synthase activity	7.13E-04
26	GO:0050377: UDP-glucose 4,6-dehydratase activity	7.13E-04
27	GO:0043141: ATP-dependent 5'-3' DNA helicase activity	7.13E-04
28	GO:0043565: sequence-specific DNA binding	9.03E-04
29	GO:0070330: aromatase activity	1.16E-03
30	GO:0047274: galactinol-sucrose galactosyltransferase activity	1.16E-03
31	GO:0046423: allene-oxide cyclase activity	1.16E-03
32	GO:0016614: oxidoreductase activity, acting on CH-OH group of donors	1.22E-03
33	GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity	1.45E-03
34	GO:0102336: 3-oxo-arachidoyl-CoA synthase activity	1.45E-03
35	GO:0102337: 3-oxo-cerotoyl-CoA synthase activity	1.45E-03
36	GO:0004675: transmembrane receptor protein serine/threonine kinase activity	1.58E-03
37	GO:0005385: zinc ion transmembrane transporter activity	1.61E-03
38	GO:0003865: 3-oxo-5-alpha-steroid 4-dehydrogenase activity	1.66E-03
39	GO:0004351: glutamate decarboxylase activity	1.66E-03
40	GO:0004021: L-alanine:2-oxoglutarate aminotransferase activity	1.66E-03
41	GO:0043015: gamma-tubulin binding	2.23E-03
42	GO:0050378: UDP-glucuronate 4-epimerase activity	2.23E-03
43	GO:0008514: organic anion transmembrane transporter activity	2.53E-03
44	GO:0047631: ADP-ribose diphosphatase activity	2.84E-03
45	GO:0002020: protease binding	2.84E-03
46	GO:0004356: glutamate-ammonia ligase activity	2.84E-03
47	GO:0045431: flavonol synthase activity	2.84E-03
48	GO:0019139: cytokinin dehydrogenase activity	2.84E-03
49	GO:0018685: alkane 1-monooxygenase activity	2.84E-03
50	GO:0030246: carbohydrate binding	2.98E-03
51	GO:0031625: ubiquitin protein ligase binding	3.15E-03
52	GO:0008519: ammonium transmembrane transporter activity	3.51E-03
53	GO:0035673: oligopeptide transmembrane transporter activity	3.51E-03
54	GO:0000210: NAD+ diphosphatase activity	3.51E-03
55	GO:0016462: pyrophosphatase activity	3.51E-03
56	GO:0005516: calmodulin binding	3.72E-03
57	GO:0051020: GTPase binding	4.23E-03
58	GO:0016818: hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	4.23E-03
59	GO:0004143: diacylglycerol kinase activity	4.99E-03
60	GO:0004427: inorganic diphosphatase activity	4.99E-03
61	GO:0016621: cinnamoyl-CoA reductase activity	4.99E-03
62	GO:0019899: enzyme binding	4.99E-03
63	GO:0008143: poly(A) binding	4.99E-03
64	GO:0003951: NAD+ kinase activity	6.65E-03
65	GO:0016627: oxidoreductase activity, acting on the CH-CH group of donors	7.54E-03
66	GO:0003678: DNA helicase activity	7.54E-03
67	GO:0005545: 1-phosphatidylinositol binding	9.45E-03
68	GO:0008047: enzyme activator activity	9.45E-03
69	GO:0004713: protein tyrosine kinase activity	9.45E-03
70	GO:0015198: oligopeptide transporter activity	1.15E-02
71	GO:0005315: inorganic phosphate transmembrane transporter activity	1.26E-02
72	GO:0003700: transcription factor activity, sequence-specific DNA binding	1.26E-02
73	GO:0005262: calcium channel activity	1.26E-02
74	GO:0005388: calcium-transporting ATPase activity	1.26E-02
75	GO:0008131: primary amine oxidase activity	1.37E-02
76	GO:0004672: protein kinase activity	1.40E-02
77	GO:0050660: flavin adenine dinucleotide binding	1.83E-02
78	GO:0051087: chaperone binding	1.86E-02
79	GO:0008324: cation transmembrane transporter activity	1.86E-02
80	GO:0044212: transcription regulatory region DNA binding	2.01E-02
81	GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity	2.12E-02
82	GO:0003779: actin binding	2.28E-02
83	GO:0051082: unfolded protein binding	2.35E-02
84	GO:0003824: catalytic activity	2.36E-02
85	GO:0046873: metal ion transmembrane transporter activity	2.82E-02
86	GO:0030276: clathrin binding	2.82E-02
87	GO:0005355: glucose transmembrane transporter activity	2.97E-02
88	GO:0010181: FMN binding	2.97E-02
89	GO:0050662: coenzyme binding	2.97E-02
90	GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds	3.08E-02
91	GO:0004518: nuclease activity	3.44E-02
92	GO:0015144: carbohydrate transmembrane transporter activity	3.52E-02
93	GO:0051015: actin filament binding	3.60E-02
94	GO:0003729: mRNA binding	3.91E-02
95	GO:0005351: sugar:proton symporter activity	3.96E-02
96	GO:0016413: O-acetyltransferase activity	4.09E-02
97	GO:0008017: microtubule binding	4.24E-02
98	GO:0009931: calcium-dependent protein serine/threonine kinase activity	4.61E-02
99	GO:0004683: calmodulin-dependent protein kinase activity	4.78E-02
100	GO:0102483: scopolin beta-glucosidase activity	4.78E-02
101	GO:0030247: polysaccharide binding	4.78E-02
102	GO:0008289: lipid binding	4.87E-02
103	GO:0008757: S-adenosylmethionine-dependent methyltransferase activity	4.96E-02

Rank	GO Term	Adjusted P value
1	GO:0005886: plasma membrane	4.46E-08
2	GO:0016021: integral component of membrane	1.04E-05
3	GO:0005768: endosome	2.68E-05
4	GO:0009923: fatty acid elongase complex	3.27E-04
5	GO:0005911: cell-cell junction	3.27E-04
6	GO:0016442: RISC complex	3.27E-04
7	GO:0005802: trans-Golgi network	3.65E-04
8	GO:0000145: exocyst	4.99E-04
9	GO:0010494: cytoplasmic stress granule	5.07E-04
10	GO:0046658: anchored component of plasma membrane	5.70E-04
11	GO:0080085: signal recognition particle, chloroplast targeting	7.13E-04
12	GO:0070062: extracellular exosome	1.66E-03
13	GO:0030173: integral component of Golgi membrane	4.23E-03
14	GO:0016363: nuclear matrix	4.23E-03
15	GO:0032580: Golgi cisterna membrane	4.77E-03
16	GO:0005794: Golgi apparatus	4.92E-03
17	GO:0005743: mitochondrial inner membrane	7.73E-03
18	GO:0015030: Cajal body	8.48E-03
19	GO:0016604: nuclear body	8.48E-03
20	GO:0048471: perinuclear region of cytoplasm	1.05E-02
21	GO:0031902: late endosome membrane	1.12E-02
22	GO:0005905: clathrin-coated pit	1.99E-02
23	GO:0010008: endosome membrane	2.02E-02
24	GO:0000790: nuclear chromatin	2.53E-02
25	GO:0030136: clathrin-coated vesicle	2.53E-02
26	GO:0005770: late endosome	2.82E-02
27	GO:0009505: plant-type cell wall	2.94E-02
28	GO:0009506: plasmodesma	3.21E-02
29	GO:0005778: peroxisomal membrane	3.92E-02
30	GO:0000932: P-body	4.26E-02
31	GO:0005829: cytosol	4.81E-02