Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT4G31875

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0010243: response to organonitrogen compound0.00E+00
2GO:0015843: methylammonium transport0.00E+00
3GO:0042754: negative regulation of circadian rhythm1.19E-08
4GO:0009909: regulation of flower development6.07E-08
5GO:0071483: cellular response to blue light2.27E-07
6GO:0007623: circadian rhythm3.73E-07
7GO:0010100: negative regulation of photomorphogenesis2.30E-06
8GO:0048574: long-day photoperiodism, flowering2.30E-06
9GO:0006355: regulation of transcription, DNA-templated1.01E-05
10GO:0006551: leucine metabolic process1.13E-05
11GO:0006351: transcription, DNA-templated1.66E-05
12GO:0043496: regulation of protein homodimerization activity3.00E-05
13GO:0009658: chloroplast organization4.18E-05
14GO:0071230: cellular response to amino acid stimulus5.40E-05
15GO:0015696: ammonium transport8.23E-05
16GO:2001141: regulation of RNA biosynthetic process8.23E-05
17GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity8.23E-05
18GO:0072488: ammonium transmembrane transport1.14E-04
19GO:0009416: response to light stimulus2.32E-04
20GO:0070370: cellular heat acclimation2.66E-04
21GO:0009864: induced systemic resistance, jasmonic acid mediated signaling pathway2.66E-04
22GO:0045893: positive regulation of transcription, DNA-templated2.79E-04
23GO:0009624: response to nematode2.96E-04
24GO:0006352: DNA-templated transcription, initiation5.39E-04
25GO:0006816: calcium ion transport5.39E-04
26GO:0009739: response to gibberellin5.65E-04
27GO:0009785: blue light signaling pathway6.40E-04
28GO:0010207: photosystem II assembly6.92E-04
29GO:0006071: glycerol metabolic process7.99E-04
30GO:0009723: response to ethylene8.83E-04
31GO:0006874: cellular calcium ion homeostasis9.08E-04
32GO:0010017: red or far-red light signaling pathway1.02E-03
33GO:0045892: negative regulation of transcription, DNA-templated1.13E-03
34GO:0009751: response to salicylic acid1.35E-03
35GO:0042752: regulation of circadian rhythm1.39E-03
36GO:0009753: response to jasmonic acid1.46E-03
37GO:0009630: gravitropism1.59E-03
38GO:0009567: double fertilization forming a zygote and endosperm1.73E-03
39GO:0010218: response to far red light2.48E-03
40GO:0006865: amino acid transport2.64E-03
41GO:0045087: innate immune response2.72E-03
42GO:0009637: response to blue light2.72E-03
43GO:0010114: response to red light3.23E-03
44GO:0009640: photomorphogenesis3.23E-03
45GO:0010224: response to UV-B4.05E-03
46GO:0009733: response to auxin5.36E-03
47GO:0009409: response to cold6.46E-03
48GO:0046686: response to cadmium ion7.43E-03
49GO:0010468: regulation of gene expression8.30E-03
50GO:0009737: response to abscisic acid1.02E-02
51GO:0010200: response to chitin1.19E-02
52GO:0009651: response to salt stress1.61E-02
53GO:0009908: flower development2.14E-02
54GO:0009611: response to wounding2.33E-02
55GO:0006810: transport4.99E-02
RankGO TermAdjusted P value
1GO:0004419: hydroxymethylglutaryl-CoA lyase activity0.00E+00
2GO:0003700: transcription factor activity, sequence-specific DNA binding1.27E-07
3GO:0000989: transcription factor activity, transcription factor binding2.95E-06
4GO:0019904: protein domain specific binding5.53E-06
5GO:0008066: glutamate receptor activity1.13E-05
6GO:0015173: aromatic amino acid transmembrane transporter activity3.00E-05
7GO:0015175: neutral amino acid transmembrane transporter activity8.23E-05
8GO:0001053: plastid sigma factor activity1.14E-04
9GO:0016987: sigma factor activity1.14E-04
10GO:0008519: ammonium transmembrane transporter activity1.86E-04
11GO:0030674: protein binding, bridging3.08E-04
12GO:0008889: glycerophosphodiester phosphodiesterase activity3.97E-04
13GO:0008270: zinc ion binding4.42E-04
14GO:0005262: calcium channel activity6.40E-04
15GO:0003677: DNA binding7.25E-04
16GO:0004970: ionotropic glutamate receptor activity7.45E-04
17GO:0005217: intracellular ligand-gated ion channel activity7.45E-04
18GO:0004527: exonuclease activity1.33E-03
19GO:0016791: phosphatase activity1.73E-03
20GO:0004721: phosphoprotein phosphatase activity2.17E-03
21GO:0030145: manganese ion binding2.56E-03
22GO:0003899: DNA-directed 5'-3' RNA polymerase activity3.95E-03
23GO:0015171: amino acid transmembrane transporter activity4.24E-03
24GO:0016829: lyase activity6.20E-03
25GO:0042802: identical protein binding8.67E-03
26GO:0004722: protein serine/threonine phosphatase activity1.40E-02
27GO:0004519: endonuclease activity1.62E-02
28GO:0043565: sequence-specific DNA binding2.45E-02
29GO:0005515: protein binding2.63E-02
30GO:0005509: calcium ion binding3.58E-02
31GO:0044212: transcription regulatory region DNA binding3.80E-02
32GO:0046983: protein dimerization activity4.67E-02
RankGO TermAdjusted P value
1GO:0005777: peroxisome2.73E-03
2GO:0005759: mitochondrial matrix6.87E-03
3GO:0005887: integral component of plasma membrane1.90E-02
4GO:0005634: nucleus3.79E-02
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Gene type



Gene DE type