co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT4G31780

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0045595: regulation of cell differentiation	0.00E+00
2	GO:1904526: regulation of microtubule binding	0.00E+00
3	GO:0071629: ubiquitin-dependent catabolism of misfolded proteins by cytoplasm-associated proteasome	0.00E+00
4	GO:0009695: jasmonic acid biosynthetic process	1.20E-06
5	GO:0009414: response to water deprivation	1.36E-06
6	GO:0006970: response to osmotic stress	1.90E-06
7	GO:0009873: ethylene-activated signaling pathway	2.39E-06
8	GO:0009415: response to water	2.56E-06
9	GO:0009737: response to abscisic acid	5.91E-06
10	GO:0009611: response to wounding	8.21E-06
11	GO:0009631: cold acclimation	3.69E-05
12	GO:0009409: response to cold	3.70E-05
13	GO:2000070: regulation of response to water deprivation	1.53E-04
14	GO:0051180: vitamin transport	1.91E-04
15	GO:0030974: thiamine pyrophosphate transport	1.91E-04
16	GO:0006680: glucosylceramide catabolic process	1.91E-04
17	GO:0034472: snRNA 3'-end processing	1.91E-04
18	GO:0009609: response to symbiotic bacterium	1.91E-04
19	GO:2000280: regulation of root development	2.78E-04
20	GO:0006741: NADP biosynthetic process	4.29E-04
21	GO:1901679: nucleotide transmembrane transport	4.29E-04
22	GO:0015786: UDP-glucose transport	4.29E-04
23	GO:0010507: negative regulation of autophagy	4.29E-04
24	GO:0031407: oxylipin metabolic process	4.29E-04
25	GO:0010289: homogalacturonan biosynthetic process	4.29E-04
26	GO:0015893: drug transport	4.29E-04
27	GO:0080121: AMP transport	6.99E-04
28	GO:0080168: abscisic acid transport	6.99E-04
29	GO:0009961: response to 1-aminocyclopropane-1-carboxylic acid	6.99E-04
30	GO:0015783: GDP-fucose transport	6.99E-04
31	GO:0019674: NAD metabolic process	6.99E-04
32	GO:0034427: nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5'	6.99E-04
33	GO:0046168: glycerol-3-phosphate catabolic process	6.99E-04
34	GO:0042218: 1-aminocyclopropane-1-carboxylate biosynthetic process	6.99E-04
35	GO:0019344: cysteine biosynthetic process	7.65E-04
36	GO:0031408: oxylipin biosynthetic process	9.21E-04
37	GO:0009269: response to desiccation	9.21E-04
38	GO:0042538: hyperosmotic salinity response	9.52E-04
39	GO:0009413: response to flooding	9.97E-04
40	GO:0006624: vacuolar protein processing	9.97E-04
41	GO:0019363: pyridine nucleotide biosynthetic process	9.97E-04
42	GO:0010371: regulation of gibberellin biosynthetic process	9.97E-04
43	GO:0072334: UDP-galactose transmembrane transport	9.97E-04
44	GO:0006072: glycerol-3-phosphate metabolic process	9.97E-04
45	GO:0015867: ATP transport	1.32E-03
46	GO:0010200: response to chitin	1.53E-03
47	GO:0045487: gibberellin catabolic process	1.68E-03
48	GO:0006873: cellular ion homeostasis	1.68E-03
49	GO:0006665: sphingolipid metabolic process	1.68E-03
50	GO:0070897: DNA-templated transcriptional preinitiation complex assembly	1.68E-03
51	GO:0009651: response to salt stress	1.78E-03
52	GO:0048510: regulation of timing of transition from vegetative to reproductive phase	1.83E-03
53	GO:0035435: phosphate ion transmembrane transport	2.07E-03
54	GO:0006796: phosphate-containing compound metabolic process	2.07E-03
55	GO:1900425: negative regulation of defense response to bacterium	2.07E-03
56	GO:0015866: ADP transport	2.07E-03
57	GO:0048232: male gamete generation	2.07E-03
58	GO:0070814: hydrogen sulfide biosynthetic process	2.07E-03
59	GO:0045926: negative regulation of growth	2.49E-03
60	GO:0098655: cation transmembrane transport	2.49E-03
61	GO:0010555: response to mannitol	2.49E-03
62	GO:0010029: regulation of seed germination	2.78E-03
63	GO:1900057: positive regulation of leaf senescence	2.93E-03
64	GO:1902074: response to salt	2.93E-03
65	GO:0006401: RNA catabolic process	2.93E-03
66	GO:0006955: immune response	2.93E-03
67	GO:0007155: cell adhesion	3.40E-03
68	GO:0006811: ion transport	3.77E-03
69	GO:0048193: Golgi vesicle transport	3.88E-03
70	GO:0000184: nuclear-transcribed mRNA catabolic process, nonsense-mediated decay	4.40E-03
71	GO:0009835: fruit ripening	4.40E-03
72	GO:0010345: suberin biosynthetic process	4.40E-03
73	GO:0098656: anion transmembrane transport	4.40E-03
74	GO:0006839: mitochondrial transport	4.92E-03
75	GO:0055062: phosphate ion homeostasis	5.48E-03
76	GO:0006535: cysteine biosynthetic process from serine	5.48E-03
77	GO:0000103: sulfate assimilation	5.48E-03
78	GO:0051707: response to other organism	5.57E-03
79	GO:0018119: peptidyl-cysteine S-nitrosylation	6.06E-03
80	GO:0010015: root morphogenesis	6.06E-03
81	GO:0009698: phenylpropanoid metabolic process	6.06E-03
82	GO:0006820: anion transport	6.66E-03
83	GO:0050826: response to freezing	7.28E-03
84	GO:0018107: peptidyl-threonine phosphorylation	7.28E-03
85	GO:0006364: rRNA processing	7.50E-03
86	GO:0070588: calcium ion transmembrane transport	8.57E-03
87	GO:0055085: transmembrane transport	9.00E-03
88	GO:0006636: unsaturated fatty acid biosynthetic process	9.25E-03
89	GO:0009833: plant-type primary cell wall biogenesis	9.25E-03
90	GO:0009620: response to fungus	9.76E-03
91	GO:0005975: carbohydrate metabolic process	1.07E-02
92	GO:0009751: response to salicylic acid	1.19E-02
93	GO:0050832: defense response to fungus	1.19E-02
94	GO:0080092: regulation of pollen tube growth	1.21E-02
95	GO:0010017: red or far-red light signaling pathway	1.21E-02
96	GO:0001944: vasculature development	1.29E-02
97	GO:0009693: ethylene biosynthetic process	1.29E-02
98	GO:0009686: gibberellin biosynthetic process	1.29E-02
99	GO:0048443: stamen development	1.37E-02
100	GO:0070417: cellular response to cold	1.45E-02
101	GO:0010501: RNA secondary structure unwinding	1.53E-02
102	GO:0048653: anther development	1.53E-02
103	GO:0042631: cellular response to water deprivation	1.53E-02
104	GO:0009960: endosperm development	1.62E-02
105	GO:0071472: cellular response to salt stress	1.62E-02
106	GO:0006633: fatty acid biosynthetic process	1.69E-02
107	GO:0006814: sodium ion transport	1.70E-02
108	GO:0006355: regulation of transcription, DNA-templated	1.76E-02
109	GO:0009749: response to glucose	1.79E-02
110	GO:0010183: pollen tube guidance	1.79E-02
111	GO:0007623: circadian rhythm	1.86E-02
112	GO:0010150: leaf senescence	1.86E-02
113	GO:0010193: response to ozone	1.88E-02
114	GO:0000302: response to reactive oxygen species	1.88E-02
115	GO:0071281: cellular response to iron ion	2.06E-02
116	GO:0006470: protein dephosphorylation	2.12E-02
117	GO:0009639: response to red or far red light	2.15E-02
118	GO:0019760: glucosinolate metabolic process	2.15E-02
119	GO:0010468: regulation of gene expression	2.22E-02
120	GO:0010286: heat acclimation	2.25E-02
121	GO:0051607: defense response to virus	2.34E-02
122	GO:0009788: negative regulation of abscisic acid-activated signaling pathway	2.54E-02
123	GO:0006950: response to stress	2.74E-02
124	GO:0006351: transcription, DNA-templated	2.84E-02
125	GO:0016049: cell growth	2.84E-02
126	GO:0045087: innate immune response	3.49E-02
127	GO:0006631: fatty acid metabolic process	3.94E-02
128	GO:0006855: drug transmembrane transport	4.66E-02
129	GO:0000165: MAPK cascade	4.78E-02
130	GO:0006812: cation transport	4.90E-02

Rank	GO Term	Adjusted P value
1	GO:0008419: RNA lariat debranching enzyme activity	0.00E+00
2	GO:0046423: allene-oxide cyclase activity	9.11E-09
3	GO:0016629: 12-oxophytodienoate reductase activity	1.74E-06
4	GO:0010181: FMN binding	1.32E-04
5	GO:0090440: abscisic acid transporter activity	1.91E-04
6	GO:0004348: glucosylceramidase activity	1.91E-04
7	GO:0042736: NADH kinase activity	1.91E-04
8	GO:0090422: thiamine pyrophosphate transporter activity	1.91E-04
9	GO:0001047: core promoter binding	4.29E-04
10	GO:0042389: omega-3 fatty acid desaturase activity	4.29E-04
11	GO:0017040: ceramidase activity	4.29E-04
12	GO:0003958: NADPH-hemoprotein reductase activity	4.29E-04
13	GO:0015297: antiporter activity	5.06E-04
14	GO:0004383: guanylate cyclase activity	6.99E-04
15	GO:0004367: glycerol-3-phosphate dehydrogenase [NAD+] activity	6.99E-04
16	GO:0005457: GDP-fucose transmembrane transporter activity	6.99E-04
17	GO:0004020: adenylylsulfate kinase activity	6.99E-04
18	GO:0005460: UDP-glucose transmembrane transporter activity	9.97E-04
19	GO:0009001: serine O-acetyltransferase activity	9.97E-04
20	GO:0052634: C-19 gibberellin 2-beta-dioxygenase activity	9.97E-04
21	GO:0001653: peptide receptor activity	9.97E-04
22	GO:0005432: calcium:sodium antiporter activity	9.97E-04
23	GO:0070696: transmembrane receptor protein serine/threonine kinase binding	1.68E-03
24	GO:0016772: transferase activity, transferring phosphorus-containing groups	1.68E-03
25	GO:0008381: mechanically-gated ion channel activity	1.68E-03
26	GO:0009922: fatty acid elongase activity	1.68E-03
27	GO:0005459: UDP-galactose transmembrane transporter activity	1.68E-03
28	GO:0080122: AMP transmembrane transporter activity	1.68E-03
29	GO:0005347: ATP transmembrane transporter activity	2.49E-03
30	GO:0015217: ADP transmembrane transporter activity	2.49E-03
31	GO:0004427: inorganic diphosphatase activity	2.93E-03
32	GO:0016621: cinnamoyl-CoA reductase activity	2.93E-03
33	GO:0004004: ATP-dependent RNA helicase activity	3.09E-03
34	GO:0015491: cation:cation antiporter activity	3.40E-03
35	GO:0004564: beta-fructofuranosidase activity	3.40E-03
36	GO:0016847: 1-aminocyclopropane-1-carboxylate synthase activity	3.40E-03
37	GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water	3.88E-03
38	GO:0003951: NAD+ kinase activity	3.88E-03
39	GO:0008308: voltage-gated anion channel activity	3.88E-03
40	GO:0004575: sucrose alpha-glucosidase activity	4.93E-03
41	GO:0044212: transcription regulatory region DNA binding	5.17E-03
42	GO:0003700: transcription factor activity, sequence-specific DNA binding	7.08E-03
43	GO:0005262: calcium channel activity	7.28E-03
44	GO:0015114: phosphate ion transmembrane transporter activity	7.28E-03
45	GO:0000175: 3'-5'-exoribonuclease activity	7.28E-03
46	GO:0042973: glucan endo-1,3-beta-D-glucosidase activity	7.91E-03
47	GO:0017025: TBP-class protein binding	8.57E-03
48	GO:0102337: 3-oxo-cerotoyl-CoA synthase activity	9.25E-03
49	GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity	9.25E-03
50	GO:0102336: 3-oxo-arachidoyl-CoA synthase activity	9.25E-03
51	GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds	9.55E-03
52	GO:0004857: enzyme inhibitor activity	9.94E-03
53	GO:0004722: protein serine/threonine phosphatase activity	1.04E-02
54	GO:0051087: chaperone binding	1.07E-02
55	GO:0004540: ribonuclease activity	1.14E-02
56	GO:0004707: MAP kinase activity	1.14E-02
57	GO:0003677: DNA binding	1.22E-02
58	GO:0018024: histone-lysine N-methyltransferase activity	1.45E-02
59	GO:0004872: receptor activity	1.79E-02
60	GO:0004197: cysteine-type endopeptidase activity	1.97E-02
61	GO:0004702: signal transducer, downstream of receptor, with serine/threonine kinase activity	2.25E-02
62	GO:0008757: S-adenosylmethionine-dependent methyltransferase activity	2.84E-02
63	GO:0005096: GTPase activator activity	3.05E-02
64	GO:0015238: drug transmembrane transporter activity	3.05E-02
65	GO:0043565: sequence-specific DNA binding	3.33E-02
66	GO:0004712: protein serine/threonine/tyrosine kinase activity	3.71E-02
67	GO:0051287: NAD binding	4.78E-02

Rank	GO Term	Adjusted P value
1	GO:0032039: integrator complex	0.00E+00
2	GO:0031357: integral component of chloroplast inner membrane	4.29E-04
3	GO:0042170: plastid membrane	4.29E-04
4	GO:0009331: glycerol-3-phosphate dehydrogenase complex	9.97E-04
5	GO:0000178: exosome (RNase complex)	1.68E-03
6	GO:0005743: mitochondrial inner membrane	1.11E-02
7	GO:0031225: anchored component of membrane	1.23E-02
8	GO:0015629: actin cytoskeleton	1.29E-02
9	GO:0005770: late endosome	1.62E-02
10	GO:0005694: chromosome	1.97E-02
11	GO:0005778: peroxisomal membrane	2.25E-02
12	GO:0010319: stromule	2.25E-02
13	GO:0000932: P-body	2.44E-02
14	GO:0046658: anchored component of plasma membrane	2.46E-02
15	GO:0031902: late endosome membrane	3.94E-02