co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT4G31770

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0035024: negative regulation of Rho protein signal transduction	0.00E+00
2	GO:0046967: cytosol to ER transport	0.00E+00
3	GO:0098755: maintenance of seed dormancy by absisic acid	0.00E+00
4	GO:0070328: triglyceride homeostasis	0.00E+00
5	GO:0042353: fucose biosynthetic process	0.00E+00
6	GO:0034775: glutathione transmembrane transport	0.00E+00
7	GO:0055091: phospholipid homeostasis	0.00E+00
8	GO:0010029: regulation of seed germination	1.46E-06
9	GO:0009611: response to wounding	3.22E-06
10	GO:0010200: response to chitin	1.02E-05
11	GO:0006970: response to osmotic stress	5.78E-05
12	GO:0009873: ethylene-activated signaling pathway	6.39E-05
13	GO:0006751: glutathione catabolic process	9.47E-05
14	GO:0009737: response to abscisic acid	1.19E-04
15	GO:2000070: regulation of response to water deprivation	2.19E-04
16	GO:0030974: thiamine pyrophosphate transport	2.41E-04
17	GO:0009865: pollen tube adhesion	2.41E-04
18	GO:0006680: glucosylceramide catabolic process	2.41E-04
19	GO:1902039: negative regulation of seed dormancy process	2.41E-04
20	GO:0034472: snRNA 3'-end processing	2.41E-04
21	GO:0009609: response to symbiotic bacterium	2.41E-04
22	GO:0051180: vitamin transport	2.41E-04
23	GO:2000280: regulation of root development	3.89E-04
24	GO:1901679: nucleotide transmembrane transport	5.34E-04
25	GO:0015786: UDP-glucose transport	5.34E-04
26	GO:0010507: negative regulation of autophagy	5.34E-04
27	GO:0031407: oxylipin metabolic process	5.34E-04
28	GO:0042754: negative regulation of circadian rhythm	5.34E-04
29	GO:0010289: homogalacturonan biosynthetic process	5.34E-04
30	GO:0055088: lipid homeostasis	5.34E-04
31	GO:0015893: drug transport	5.34E-04
32	GO:0006741: NADP biosynthetic process	5.34E-04
33	GO:0048838: release of seed from dormancy	5.34E-04
34	GO:0010288: response to lead ion	8.68E-04
35	GO:0090630: activation of GTPase activity	8.68E-04
36	GO:0009961: response to 1-aminocyclopropane-1-carboxylic acid	8.68E-04
37	GO:0015783: GDP-fucose transport	8.68E-04
38	GO:0019674: NAD metabolic process	8.68E-04
39	GO:0034427: nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5'	8.68E-04
40	GO:0080168: abscisic acid transport	8.68E-04
41	GO:0080121: AMP transport	8.68E-04
42	GO:0007623: circadian rhythm	9.03E-04
43	GO:0051707: response to other organism	1.09E-03
44	GO:0009695: jasmonic acid biosynthetic process	1.16E-03
45	GO:0055089: fatty acid homeostasis	1.24E-03
46	GO:0019363: pyridine nucleotide biosynthetic process	1.24E-03
47	GO:0010371: regulation of gibberellin biosynthetic process	1.24E-03
48	GO:0072334: UDP-galactose transmembrane transport	1.24E-03
49	GO:0033014: tetrapyrrole biosynthetic process	1.24E-03
50	GO:0031408: oxylipin biosynthetic process	1.27E-03
51	GO:0001944: vasculature development	1.51E-03
52	GO:0042991: transcription factor import into nucleus	1.65E-03
53	GO:1902347: response to strigolactone	1.65E-03
54	GO:0009939: positive regulation of gibberellic acid mediated signaling pathway	1.65E-03
55	GO:0006085: acetyl-CoA biosynthetic process	1.65E-03
56	GO:0045727: positive regulation of translation	1.65E-03
57	GO:0015867: ATP transport	1.65E-03
58	GO:0006665: sphingolipid metabolic process	2.11E-03
59	GO:0032957: inositol trisphosphate metabolic process	2.11E-03
60	GO:0009247: glycolipid biosynthetic process	2.11E-03
61	GO:0070897: DNA-templated transcriptional preinitiation complex assembly	2.11E-03
62	GO:0045487: gibberellin catabolic process	2.11E-03
63	GO:0009749: response to glucose	2.37E-03
64	GO:0000302: response to reactive oxygen species	2.54E-03
65	GO:0048510: regulation of timing of transition from vegetative to reproductive phase	2.54E-03
66	GO:0015866: ADP transport	2.60E-03
67	GO:0010256: endomembrane system organization	2.60E-03
68	GO:0035435: phosphate ion transmembrane transport	2.60E-03
69	GO:0047484: regulation of response to osmotic stress	2.60E-03
70	GO:0009414: response to water deprivation	2.63E-03
71	GO:0009639: response to red or far red light	3.07E-03
72	GO:0098655: cation transmembrane transport	3.12E-03
73	GO:0010555: response to mannitol	3.12E-03
74	GO:1901001: negative regulation of response to salt stress	3.12E-03
75	GO:0015937: coenzyme A biosynthetic process	3.68E-03
76	GO:1900057: positive regulation of leaf senescence	3.68E-03
77	GO:0051510: regulation of unidimensional cell growth	3.68E-03
78	GO:1902074: response to salt	3.68E-03
79	GO:0006401: RNA catabolic process	3.68E-03
80	GO:0006955: immune response	3.68E-03
81	GO:0009788: negative regulation of abscisic acid-activated signaling pathway	3.87E-03
82	GO:0009651: response to salt stress	4.01E-03
83	GO:0019375: galactolipid biosynthetic process	4.27E-03
84	GO:0009415: response to water	4.27E-03
85	GO:0007155: cell adhesion	4.27E-03
86	GO:0009061: anaerobic respiration	4.27E-03
87	GO:0070413: trehalose metabolism in response to stress	4.27E-03
88	GO:0009699: phenylpropanoid biosynthetic process	4.89E-03
89	GO:0048193: Golgi vesicle transport	4.89E-03
90	GO:0009409: response to cold	5.01E-03
91	GO:0006811: ion transport	5.26E-03
92	GO:0006783: heme biosynthetic process	5.54E-03
93	GO:0010112: regulation of systemic acquired resistance	5.54E-03
94	GO:0010345: suberin biosynthetic process	5.54E-03
95	GO:0098656: anion transmembrane transport	5.54E-03
96	GO:0051865: protein autoubiquitination	5.54E-03
97	GO:0090305: nucleic acid phosphodiester bond hydrolysis	5.54E-03
98	GO:0000184: nuclear-transcribed mRNA catabolic process, nonsense-mediated decay	5.54E-03
99	GO:0006779: porphyrin-containing compound biosynthetic process	6.21E-03
100	GO:0010018: far-red light signaling pathway	6.21E-03
101	GO:0006355: regulation of transcription, DNA-templated	6.22E-03
102	GO:0006839: mitochondrial transport	6.89E-03
103	GO:0006782: protoporphyrinogen IX biosynthetic process	6.92E-03
104	GO:0019538: protein metabolic process	6.92E-03
105	GO:0055062: phosphate ion homeostasis	6.92E-03
106	GO:0010015: root morphogenesis	7.65E-03
107	GO:0009698: phenylpropanoid metabolic process	7.65E-03
108	GO:0006820: anion transport	8.41E-03
109	GO:0050826: response to freezing	9.20E-03
110	GO:0018107: peptidyl-threonine phosphorylation	9.20E-03
111	GO:0042538: hyperosmotic salinity response	9.79E-03
112	GO:0048467: gynoecium development	1.00E-02
113	GO:0009809: lignin biosynthetic process	1.05E-02
114	GO:0006364: rRNA processing	1.05E-02
115	GO:0010030: positive regulation of seed germination	1.09E-02
116	GO:0070588: calcium ion transmembrane transport	1.09E-02
117	GO:0009969: xyloglucan biosynthetic process	1.09E-02
118	GO:0010167: response to nitrate	1.09E-02
119	GO:0035556: intracellular signal transduction	1.13E-02
120	GO:0042753: positive regulation of circadian rhythm	1.17E-02
121	GO:0006636: unsaturated fatty acid biosynthetic process	1.17E-02
122	GO:0009833: plant-type primary cell wall biogenesis	1.17E-02
123	GO:0005992: trehalose biosynthetic process	1.26E-02
124	GO:0009863: salicylic acid mediated signaling pathway	1.26E-02
125	GO:0009620: response to fungus	1.37E-02
126	GO:0006351: transcription, DNA-templated	1.43E-02
127	GO:0009269: response to desiccation	1.45E-02
128	GO:0009624: response to nematode	1.50E-02
129	GO:0080092: regulation of pollen tube growth	1.54E-02
130	GO:0009742: brassinosteroid mediated signaling pathway	1.59E-02
131	GO:0009686: gibberellin biosynthetic process	1.64E-02
132	GO:0048443: stamen development	1.74E-02
133	GO:0009751: response to salicylic acid	1.82E-02
134	GO:0000271: polysaccharide biosynthetic process	1.95E-02
135	GO:0010501: RNA secondary structure unwinding	1.95E-02
136	GO:0048653: anther development	1.95E-02
137	GO:0009753: response to jasmonic acid	2.03E-02
138	GO:0048868: pollen tube development	2.05E-02
139	GO:0009741: response to brassinosteroid	2.05E-02
140	GO:0009960: endosperm development	2.05E-02
141	GO:0045489: pectin biosynthetic process	2.05E-02
142	GO:0008152: metabolic process	2.10E-02
143	GO:0048544: recognition of pollen	2.16E-02
144	GO:0006814: sodium ion transport	2.16E-02
145	GO:0009790: embryo development	2.20E-02
146	GO:0008654: phospholipid biosynthetic process	2.27E-02
147	GO:0009791: post-embryonic development	2.27E-02
148	GO:0010183: pollen tube guidance	2.27E-02
149	GO:0006633: fatty acid biosynthetic process	2.37E-02
150	GO:0080156: mitochondrial mRNA modification	2.38E-02
151	GO:0016567: protein ubiquitination	2.38E-02
152	GO:0010193: response to ozone	2.38E-02
153	GO:0010150: leaf senescence	2.60E-02
154	GO:0019760: glucosinolate metabolic process	2.73E-02
155	GO:0010286: heat acclimation	2.85E-02
156	GO:0071805: potassium ion transmembrane transport	2.85E-02
157	GO:0006904: vesicle docking involved in exocytosis	2.85E-02
158	GO:0006470: protein dephosphorylation	2.97E-02
159	GO:0051607: defense response to virus	2.98E-02
160	GO:0010027: thylakoid membrane organization	3.10E-02
161	GO:0006952: defense response	3.11E-02
162	GO:0009816: defense response to bacterium, incompatible interaction	3.23E-02
163	GO:0007165: signal transduction	3.25E-02
164	GO:0015995: chlorophyll biosynthetic process	3.48E-02
165	GO:0016049: cell growth	3.61E-02
166	GO:0009738: abscisic acid-activated signaling pathway	3.65E-02
167	GO:0048481: plant ovule development	3.75E-02
168	GO:0009826: unidimensional cell growth	3.87E-02
169	GO:0009631: cold acclimation	4.15E-02
170	GO:0016051: carbohydrate biosynthetic process	4.43E-02
171	GO:0045087: innate immune response	4.43E-02
172	GO:0045893: positive regulation of transcription, DNA-templated	4.50E-02

Rank	GO Term	Adjusted P value
1	GO:0042171: lysophosphatidic acid acyltransferase activity	0.00E+00
2	GO:0017048: Rho GTPase binding	0.00E+00
3	GO:0016629: 12-oxophytodienoate reductase activity	2.70E-06
4	GO:0016621: cinnamoyl-CoA reductase activity	1.72E-04
5	GO:0010181: FMN binding	2.11E-04
6	GO:0004348: glucosylceramidase activity	2.41E-04
7	GO:0042736: NADH kinase activity	2.41E-04
8	GO:0090422: thiamine pyrophosphate transporter activity	2.41E-04
9	GO:0090440: abscisic acid transporter activity	2.41E-04
10	GO:0004702: signal transducer, downstream of receptor, with serine/threonine kinase activity	3.60E-04
11	GO:0004103: choline kinase activity	5.34E-04
12	GO:0008883: glutamyl-tRNA reductase activity	5.34E-04
13	GO:0001047: core promoter binding	5.34E-04
14	GO:0042389: omega-3 fatty acid desaturase activity	5.34E-04
15	GO:0017040: ceramidase activity	5.34E-04
16	GO:0003839: gamma-glutamylcyclotransferase activity	5.34E-04
17	GO:0003958: NADPH-hemoprotein reductase activity	5.34E-04
18	GO:0004594: pantothenate kinase activity	5.34E-04
19	GO:0046509: 1,2-diacylglycerol 3-beta-galactosyltransferase activity	5.34E-04
20	GO:0005096: GTPase activator activity	6.26E-04
21	GO:0019888: protein phosphatase regulator activity	6.81E-04
22	GO:0015297: antiporter activity	8.42E-04
23	GO:0003840: gamma-glutamyltransferase activity	8.68E-04
24	GO:0036374: glutathione hydrolase activity	8.68E-04
25	GO:0046423: allene-oxide cyclase activity	8.68E-04
26	GO:0004383: guanylate cyclase activity	8.68E-04
27	GO:0005457: GDP-fucose transmembrane transporter activity	8.68E-04
28	GO:0047325: inositol tetrakisphosphate 1-kinase activity	8.68E-04
29	GO:0052726: inositol-1,3,4-trisphosphate 5-kinase activity	8.68E-04
30	GO:0005460: UDP-glucose transmembrane transporter activity	1.24E-03
31	GO:0010178: IAA-amino acid conjugate hydrolase activity	1.24E-03
32	GO:0052725: inositol-1,3,4-trisphosphate 6-kinase activity	1.24E-03
33	GO:0052634: C-19 gibberellin 2-beta-dioxygenase activity	1.24E-03
34	GO:0001653: peptide receptor activity	1.24E-03
35	GO:0016756: glutathione gamma-glutamylcysteinyltransferase activity	1.24E-03
36	GO:0005432: calcium:sodium antiporter activity	1.24E-03
37	GO:0035250: UDP-galactosyltransferase activity	1.24E-03
38	GO:0004842: ubiquitin-protein transferase activity	1.60E-03
39	GO:0003841: 1-acylglycerol-3-phosphate O-acyltransferase activity	1.65E-03
40	GO:0004623: phospholipase A2 activity	2.11E-03
41	GO:0070696: transmembrane receptor protein serine/threonine kinase binding	2.11E-03
42	GO:0008381: mechanically-gated ion channel activity	2.11E-03
43	GO:0009922: fatty acid elongase activity	2.11E-03
44	GO:0005459: UDP-galactose transmembrane transporter activity	2.11E-03
45	GO:0080122: AMP transmembrane transporter activity	2.11E-03
46	GO:0005347: ATP transmembrane transporter activity	3.12E-03
47	GO:0015217: ADP transmembrane transporter activity	3.12E-03
48	GO:0003700: transcription factor activity, sequence-specific DNA binding	3.61E-03
49	GO:0102425: myricetin 3-O-glucosyltransferase activity	3.68E-03
50	GO:0102360: daphnetin 3-O-glucosyltransferase activity	3.68E-03
51	GO:0015491: cation:cation antiporter activity	4.27E-03
52	GO:0004564: beta-fructofuranosidase activity	4.27E-03
53	GO:0047893: flavonol 3-O-glucosyltransferase activity	4.27E-03
54	GO:0004004: ATP-dependent RNA helicase activity	4.31E-03
55	GO:0003951: NAD+ kinase activity	4.89E-03
56	GO:0005267: potassium channel activity	4.89E-03
57	GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water	4.89E-03
58	GO:0004575: sucrose alpha-glucosidase activity	6.21E-03
59	GO:0003677: DNA binding	6.72E-03
60	GO:0005262: calcium channel activity	9.20E-03
61	GO:0015114: phosphate ion transmembrane transporter activity	9.20E-03
62	GO:0000175: 3'-5'-exoribonuclease activity	9.20E-03
63	GO:0044212: transcription regulatory region DNA binding	9.32E-03
64	GO:0004674: protein serine/threonine kinase activity	9.83E-03
65	GO:0042973: glucan endo-1,3-beta-D-glucosidase activity	1.00E-02
66	GO:0008146: sulfotransferase activity	1.09E-02
67	GO:0017025: TBP-class protein binding	1.09E-02
68	GO:0016757: transferase activity, transferring glycosyl groups	1.13E-02
69	GO:0102337: 3-oxo-cerotoyl-CoA synthase activity	1.17E-02
70	GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity	1.17E-02
71	GO:0102336: 3-oxo-arachidoyl-CoA synthase activity	1.17E-02
72	GO:0080043: quercetin 3-O-glucosyltransferase activity	1.37E-02
73	GO:0080044: quercetin 7-O-glucosyltransferase activity	1.37E-02
74	GO:0035251: UDP-glucosyltransferase activity	1.45E-02
75	GO:0004540: ribonuclease activity	1.45E-02
76	GO:0004707: MAP kinase activity	1.45E-02
77	GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity	1.54E-02
78	GO:0016301: kinase activity	1.80E-02
79	GO:0004672: protein kinase activity	1.81E-02
80	GO:0016758: transferase activity, transferring hexosyl groups	1.83E-02
81	GO:0005524: ATP binding	1.91E-02
82	GO:0050662: coenzyme binding	2.16E-02
83	GO:0004518: nuclease activity	2.50E-02
84	GO:0016791: phosphatase activity	2.73E-02
85	GO:0008237: metallopeptidase activity	2.85E-02
86	GO:0008194: UDP-glycosyltransferase activity	2.91E-02
87	GO:0008757: S-adenosylmethionine-dependent methyltransferase activity	3.61E-02
88	GO:0015238: drug transmembrane transporter activity	3.88E-02
89	GO:0050661: NADP binding	4.86E-02

Rank	GO Term	Adjusted P value
1	GO:0032039: integrator complex	0.00E+00
2	GO:0070382: exocytic vesicle	2.41E-04
3	GO:0000159: protein phosphatase type 2A complex	5.25E-04
4	GO:0042170: plastid membrane	5.34E-04
5	GO:0005737: cytoplasm	6.10E-04
6	GO:0045177: apical part of cell	1.24E-03
7	GO:0000178: exosome (RNase complex)	2.11E-03
8	GO:0031463: Cul3-RING ubiquitin ligase complex	2.60E-03
9	GO:0030173: integral component of Golgi membrane	3.12E-03
10	GO:0005938: cell cortex	9.20E-03
11	GO:0009706: chloroplast inner membrane	1.50E-02
12	GO:0005743: mitochondrial inner membrane	1.69E-02
13	GO:0030136: clathrin-coated vesicle	1.84E-02
14	GO:0031225: anchored component of membrane	2.04E-02
15	GO:0005770: late endosome	2.05E-02
16	GO:0005622: intracellular	2.47E-02
17	GO:0000145: exocyst	2.50E-02
18	GO:0032580: Golgi cisterna membrane	2.73E-02
19	GO:0005778: peroxisomal membrane	2.85E-02
20	GO:0000932: P-body	3.10E-02
21	GO:0005788: endoplasmic reticulum lumen	3.23E-02
22	GO:0046658: anchored component of plasma membrane	3.44E-02
23	GO:0009707: chloroplast outer membrane	3.75E-02