co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT4G31700

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0044843: cell cycle G1/S phase transition	0.00E+00
2	GO:0006412: translation	6.95E-77
3	GO:0042254: ribosome biogenesis	2.13E-27
4	GO:0006626: protein targeting to mitochondrion	6.69E-08
5	GO:0009735: response to cytokinin	5.40E-06
6	GO:0000027: ribosomal large subunit assembly	1.34E-05
7	GO:0006364: rRNA processing	3.39E-05
8	GO:0009955: adaxial/abaxial pattern specification	4.06E-05
9	GO:0000028: ribosomal small subunit assembly	7.12E-05
10	GO:0006869: lipid transport	1.14E-04
11	GO:0030490: maturation of SSU-rRNA	1.16E-04
12	GO:0000494: box C/D snoRNA 3'-end processing	1.16E-04
13	GO:0000461: endonucleolytic cleavage to generate mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	1.16E-04
14	GO:0000447: endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	1.16E-04
15	GO:1990258: histone glutamine methylation	1.16E-04
16	GO:1901430: positive regulation of syringal lignin biosynthetic process	1.16E-04
17	GO:0006407: rRNA export from nucleus	1.16E-04
18	GO:0010162: seed dormancy process	1.59E-04
19	GO:0048569: post-embryonic animal organ development	2.69E-04
20	GO:0009967: positive regulation of signal transduction	2.69E-04
21	GO:0030150: protein import into mitochondrial matrix	3.91E-04
22	GO:0042256: mature ribosome assembly	4.45E-04
23	GO:0008652: cellular amino acid biosynthetic process	4.45E-04
24	GO:1902626: assembly of large subunit precursor of preribosome	4.45E-04
25	GO:0010971: positive regulation of G2/M transition of mitotic cell cycle	6.38E-04
26	GO:0009855: determination of bilateral symmetry	6.38E-04
27	GO:0051781: positive regulation of cell division	8.47E-04
28	GO:0042274: ribosomal small subunit biogenesis	8.47E-04
29	GO:0042273: ribosomal large subunit biogenesis	8.47E-04
30	GO:0042744: hydrogen peroxide catabolic process	1.06E-03
31	GO:0031167: rRNA methylation	1.07E-03
32	GO:0006413: translational initiation	1.23E-03
33	GO:0000470: maturation of LSU-rRNA	1.31E-03
34	GO:0009648: photoperiodism	1.56E-03
35	GO:0080186: developmental vegetative growth	1.84E-03
36	GO:1900057: positive regulation of leaf senescence	1.84E-03
37	GO:0022900: electron transport chain	2.43E-03
38	GO:0001510: RNA methylation	2.43E-03
39	GO:0001558: regulation of cell growth	2.43E-03
40	GO:0030422: production of siRNA involved in RNA interference	3.41E-03
41	GO:0010015: root morphogenesis	3.76E-03
42	GO:0006913: nucleocytoplasmic transport	3.76E-03
43	GO:0009682: induced systemic resistance	3.76E-03
44	GO:0006820: anion transport	4.13E-03
45	GO:0048367: shoot system development	4.58E-03
46	GO:0009944: polarity specification of adaxial/abaxial axis	6.12E-03
47	GO:0006979: response to oxidative stress	6.40E-03
48	GO:0051302: regulation of cell division	6.56E-03
49	GO:0009793: embryo development ending in seed dormancy	6.56E-03
50	GO:0048511: rhythmic process	7.00E-03
51	GO:0007005: mitochondrion organization	7.46E-03
52	GO:0071215: cellular response to abscisic acid stimulus	7.92E-03
53	GO:0009294: DNA mediated transformation	7.92E-03
54	GO:0040007: growth	7.92E-03
55	GO:0010089: xylem development	8.40E-03
56	GO:0008033: tRNA processing	9.38E-03
57	GO:0009960: endosperm development	9.89E-03
58	GO:0010197: polar nucleus fusion	9.89E-03
59	GO:0000302: response to reactive oxygen species	1.15E-02
60	GO:0010029: regulation of seed germination	1.55E-02
61	GO:0006811: ion transport	1.92E-02
62	GO:0008283: cell proliferation	2.54E-02
63	GO:0009644: response to high light intensity	2.69E-02
64	GO:0048364: root development	2.74E-02
65	GO:0009965: leaf morphogenesis	2.76E-02
66	GO:0009809: lignin biosynthetic process	3.15E-02
67	GO:0015031: protein transport	3.40E-02
68	GO:0009734: auxin-activated signaling pathway	3.69E-02
69	GO:0016569: covalent chromatin modification	3.87E-02
70	GO:0009553: embryo sac development	3.96E-02

Rank	GO Term	Adjusted P value
1	GO:0003735: structural constituent of ribosome	1.84E-91
2	GO:0003729: mRNA binding	3.75E-18
3	GO:0019843: rRNA binding	8.32E-09
4	GO:1990259: histone-glutamine methyltransferase activity	1.16E-04
5	GO:0004128: cytochrome-b5 reductase activity, acting on NAD(P)H	1.16E-04
6	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	1.50E-04
7	GO:0005078: MAP-kinase scaffold activity	2.69E-04
8	GO:0008289: lipid binding	2.79E-04
9	GO:0004407: histone deacetylase activity	3.91E-04
10	GO:0015462: ATPase-coupled protein transmembrane transporter activity	4.45E-04
11	GO:0008649: rRNA methyltransferase activity	4.45E-04
12	GO:0008097: 5S rRNA binding	6.38E-04
13	GO:0019201: nucleotide kinase activity	6.38E-04
14	GO:0004017: adenylate kinase activity	1.56E-03
15	GO:0008235: metalloexopeptidase activity	1.84E-03
16	GO:0030515: snoRNA binding	1.84E-03
17	GO:0015288: porin activity	2.13E-03
18	GO:0004601: peroxidase activity	2.32E-03
19	GO:0008135: translation factor activity, RNA binding	2.43E-03
20	GO:0008308: voltage-gated anion channel activity	2.43E-03
21	GO:0044183: protein binding involved in protein folding	3.76E-03
22	GO:0015266: protein channel activity	4.50E-03
23	GO:0051087: chaperone binding	6.56E-03
24	GO:0003723: RNA binding	7.08E-03
25	GO:0003743: translation initiation factor activity	1.08E-02
26	GO:0051082: unfolded protein binding	4.04E-02
27	GO:0020037: heme binding	4.44E-02
28	GO:0000166: nucleotide binding	4.63E-02

Rank	GO Term	Adjusted P value
1	GO:0022625: cytosolic large ribosomal subunit	3.31E-61
2	GO:0005840: ribosome	3.66E-59
3	GO:0022626: cytosolic ribosome	3.96E-58
4	GO:0022627: cytosolic small ribosomal subunit	4.52E-36
5	GO:0005730: nucleolus	8.39E-22
6	GO:0005737: cytoplasm	1.58E-18
7	GO:0009506: plasmodesma	7.72E-14
8	GO:0005829: cytosol	3.52E-13
9	GO:0015934: large ribosomal subunit	1.20E-12
10	GO:0005618: cell wall	5.64E-08
11	GO:0016020: membrane	2.04E-07
12	GO:0015935: small ribosomal subunit	3.17E-07
13	GO:0005774: vacuolar membrane	2.02E-06
14	GO:0005773: vacuole	1.39E-05
15	GO:0030686: 90S preribosome	1.16E-04
16	GO:0005758: mitochondrial intermembrane space	3.91E-04
17	GO:0005741: mitochondrial outer membrane	4.74E-04
18	GO:0005743: mitochondrial inner membrane	8.22E-04
19	GO:0031428: box C/D snoRNP complex	1.31E-03
20	GO:0016272: prefoldin complex	1.56E-03
21	GO:0009707: chloroplast outer membrane	1.73E-03
22	GO:0046930: pore complex	2.43E-03
23	GO:0005742: mitochondrial outer membrane translocase complex	2.43E-03
24	GO:0015030: Cajal body	3.07E-03
25	GO:0009507: chloroplast	3.65E-03
26	GO:0005852: eukaryotic translation initiation factor 3 complex	3.76E-03
27	GO:0032040: small-subunit processome	4.13E-03
28	GO:0005834: heterotrimeric G-protein complex	4.72E-03
29	GO:0005744: mitochondrial inner membrane presequence translocase complex	8.40E-03
30	GO:0016592: mediator complex	1.20E-02
31	GO:0030529: intracellular ribonucleoprotein complex	1.49E-02
32	GO:0005622: intracellular	2.14E-02
33	GO:0005886: plasma membrane	2.94E-02
34	GO:0005783: endoplasmic reticulum	4.28E-02