GO Enrichment Analysis of Co-expressed Genes with
AT4G31560
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0018316: peptide cross-linking via L-cystine | 0.00E+00 |
| 2 | GO:0007037: vacuolar phosphate transport | 0.00E+00 |
| 3 | GO:0009658: chloroplast organization | 4.38E-05 |
| 4 | GO:0071806: protein transmembrane transport | 1.20E-04 |
| 5 | GO:0071454: cellular response to anoxia | 1.20E-04 |
| 6 | GO:0048438: floral whorl development | 1.20E-04 |
| 7 | GO:0016031: tRNA import into mitochondrion | 1.20E-04 |
| 8 | GO:1905011: transmembrane phosphate ion transport from cytosol to vacuole | 2.77E-04 |
| 9 | GO:0048209: regulation of vesicle targeting, to, from or within Golgi | 2.77E-04 |
| 10 | GO:0006729: tetrahydrobiopterin biosynthetic process | 2.77E-04 |
| 11 | GO:0080153: negative regulation of reductive pentose-phosphate cycle | 2.77E-04 |
| 12 | GO:2000071: regulation of defense response by callose deposition | 2.77E-04 |
| 13 | GO:0009150: purine ribonucleotide metabolic process | 4.58E-04 |
| 14 | GO:0051604: protein maturation | 4.58E-04 |
| 15 | GO:0000394: RNA splicing, via endonucleolytic cleavage and ligation | 4.58E-04 |
| 16 | GO:0016226: iron-sulfur cluster assembly | 5.41E-04 |
| 17 | GO:0033014: tetrapyrrole biosynthetic process | 6.57E-04 |
| 18 | GO:1900864: mitochondrial RNA modification | 8.72E-04 |
| 19 | GO:0042274: ribosomal small subunit biogenesis | 8.72E-04 |
| 20 | GO:0031935: regulation of chromatin silencing | 8.72E-04 |
| 21 | GO:0000956: nuclear-transcribed mRNA catabolic process | 8.72E-04 |
| 22 | GO:0010190: cytochrome b6f complex assembly | 1.35E-03 |
| 23 | GO:0033365: protein localization to organelle | 1.35E-03 |
| 24 | GO:0016070: RNA metabolic process | 1.35E-03 |
| 25 | GO:0031053: primary miRNA processing | 1.35E-03 |
| 26 | GO:0010076: maintenance of floral meristem identity | 1.61E-03 |
| 27 | GO:0080036: regulation of cytokinin-activated signaling pathway | 1.61E-03 |
| 28 | GO:1900056: negative regulation of leaf senescence | 1.89E-03 |
| 29 | GO:0080111: DNA demethylation | 1.89E-03 |
| 30 | GO:0009910: negative regulation of flower development | 2.08E-03 |
| 31 | GO:0030091: protein repair | 2.19E-03 |
| 32 | GO:0001522: pseudouridine synthesis | 2.19E-03 |
| 33 | GO:0006605: protein targeting | 2.19E-03 |
| 34 | GO:0009704: de-etiolation | 2.19E-03 |
| 35 | GO:0048564: photosystem I assembly | 2.19E-03 |
| 36 | GO:0045292: mRNA cis splicing, via spliceosome | 2.19E-03 |
| 37 | GO:0009787: regulation of abscisic acid-activated signaling pathway | 2.19E-03 |
| 38 | GO:0042255: ribosome assembly | 2.19E-03 |
| 39 | GO:0006353: DNA-templated transcription, termination | 2.19E-03 |
| 40 | GO:0032544: plastid translation | 2.50E-03 |
| 41 | GO:0022900: electron transport chain | 2.50E-03 |
| 42 | GO:0006783: heme biosynthetic process | 2.82E-03 |
| 43 | GO:0009245: lipid A biosynthetic process | 2.82E-03 |
| 44 | GO:0006779: porphyrin-containing compound biosynthetic process | 3.16E-03 |
| 45 | GO:1900865: chloroplast RNA modification | 3.16E-03 |
| 46 | GO:0010380: regulation of chlorophyll biosynthetic process | 3.16E-03 |
| 47 | GO:0009682: induced systemic resistance | 3.88E-03 |
| 48 | GO:0006790: sulfur compound metabolic process | 4.26E-03 |
| 49 | GO:0010582: floral meristem determinacy | 4.26E-03 |
| 50 | GO:0009767: photosynthetic electron transport chain | 4.64E-03 |
| 51 | GO:0009266: response to temperature stimulus | 5.04E-03 |
| 52 | GO:0034605: cellular response to heat | 5.04E-03 |
| 53 | GO:0019253: reductive pentose-phosphate cycle | 5.04E-03 |
| 54 | GO:0090351: seedling development | 5.46E-03 |
| 55 | GO:0000398: mRNA splicing, via spliceosome | 6.44E-03 |
| 56 | GO:0007017: microtubule-based process | 6.76E-03 |
| 57 | GO:2000022: regulation of jasmonic acid mediated signaling pathway | 7.69E-03 |
| 58 | GO:0007005: mitochondrion organization | 7.69E-03 |
| 59 | GO:0070417: cellular response to cold | 9.17E-03 |
| 60 | GO:0008033: tRNA processing | 9.68E-03 |
| 61 | GO:0010118: stomatal movement | 9.68E-03 |
| 62 | GO:0006891: intra-Golgi vesicle-mediated transport | 1.18E-02 |
| 63 | GO:0080156: mitochondrial mRNA modification | 1.18E-02 |
| 64 | GO:0002229: defense response to oomycetes | 1.18E-02 |
| 65 | GO:0032502: developmental process | 1.24E-02 |
| 66 | GO:0030163: protein catabolic process | 1.30E-02 |
| 67 | GO:0006464: cellular protein modification process | 1.36E-02 |
| 68 | GO:0010027: thylakoid membrane organization | 1.54E-02 |
| 69 | GO:0006906: vesicle fusion | 1.66E-02 |
| 70 | GO:0006950: response to stress | 1.72E-02 |
| 71 | GO:0006888: ER to Golgi vesicle-mediated transport | 1.72E-02 |
| 72 | GO:0000160: phosphorelay signal transduction system | 1.92E-02 |
| 73 | GO:0006811: ion transport | 1.99E-02 |
| 74 | GO:0007568: aging | 2.05E-02 |
| 75 | GO:0009867: jasmonic acid mediated signaling pathway | 2.19E-02 |
| 76 | GO:0008283: cell proliferation | 2.63E-02 |
| 77 | GO:0009744: response to sucrose | 2.63E-02 |
| 78 | GO:0000165: MAPK cascade | 3.01E-02 |
| 79 | GO:0031347: regulation of defense response | 3.01E-02 |
| 80 | GO:0009736: cytokinin-activated signaling pathway | 3.25E-02 |
| 81 | GO:0009809: lignin biosynthetic process | 3.25E-02 |
| 82 | GO:0006417: regulation of translation | 3.49E-02 |
| 83 | GO:0015031: protein transport | 3.60E-02 |
| 84 | GO:0009620: response to fungus | 3.91E-02 |
| 85 | GO:0006396: RNA processing | 4.26E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0004719: protein-L-isoaspartate (D-aspartate) O-methyltransferase activity | 1.20E-04 |
| 2 | GO:0004325: ferrochelatase activity | 1.20E-04 |
| 3 | GO:0008124: 4-alpha-hydroxytetrahydrobiopterin dehydratase activity | 1.20E-04 |
| 4 | GO:0004160: dihydroxy-acid dehydratase activity | 1.20E-04 |
| 5 | GO:0009982: pseudouridine synthase activity | 2.59E-04 |
| 6 | GO:0000900: translation repressor activity, nucleic acid binding | 4.58E-04 |
| 7 | GO:0017176: phosphatidylinositol N-acetylglucosaminyltransferase activity | 4.58E-04 |
| 8 | GO:0032947: protein complex scaffold | 4.58E-04 |
| 9 | GO:0004848: ureidoglycolate hydrolase activity | 4.58E-04 |
| 10 | GO:0000339: RNA cap binding | 6.57E-04 |
| 11 | GO:0047627: adenylylsulfatase activity | 6.57E-04 |
| 12 | GO:0003723: RNA binding | 9.30E-04 |
| 13 | GO:0048038: quinone binding | 9.78E-04 |
| 14 | GO:0016773: phosphotransferase activity, alcohol group as acceptor | 1.10E-03 |
| 15 | GO:0031177: phosphopantetheine binding | 1.35E-03 |
| 16 | GO:0000035: acyl binding | 1.61E-03 |
| 17 | GO:0009927: histidine phosphotransfer kinase activity | 1.61E-03 |
| 18 | GO:0016621: cinnamoyl-CoA reductase activity | 1.89E-03 |
| 19 | GO:0000036: ACP phosphopantetheine attachment site binding involved in fatty acid biosynthetic process | 2.19E-03 |
| 20 | GO:0016491: oxidoreductase activity | 2.65E-03 |
| 21 | GO:0071949: FAD binding | 2.82E-03 |
| 22 | GO:0051537: 2 iron, 2 sulfur cluster binding | 3.16E-03 |
| 23 | GO:0005198: structural molecule activity | 3.28E-03 |
| 24 | GO:0031072: heat shock protein binding | 4.64E-03 |
| 25 | GO:0015266: protein channel activity | 4.64E-03 |
| 26 | GO:0016787: hydrolase activity | 6.21E-03 |
| 27 | GO:0051536: iron-sulfur cluster binding | 6.32E-03 |
| 28 | GO:0043424: protein histidine kinase binding | 6.76E-03 |
| 29 | GO:0003727: single-stranded RNA binding | 8.66E-03 |
| 30 | GO:0003713: transcription coactivator activity | 1.02E-02 |
| 31 | GO:0008080: N-acetyltransferase activity | 1.02E-02 |
| 32 | GO:0050662: coenzyme binding | 1.07E-02 |
| 33 | GO:0005515: protein binding | 1.54E-02 |
| 34 | GO:0008236: serine-type peptidase activity | 1.79E-02 |
| 35 | GO:0008233: peptidase activity | 1.83E-02 |
| 36 | GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity | 1.85E-02 |
| 37 | GO:0050897: cobalt ion binding | 2.05E-02 |
| 38 | GO:0000149: SNARE binding | 2.33E-02 |
| 39 | GO:0005484: SNAP receptor activity | 2.63E-02 |
| 40 | GO:0043621: protein self-association | 2.78E-02 |
| 41 | GO:0003824: catalytic activity | 3.00E-02 |
| 42 | GO:0003690: double-stranded DNA binding | 3.33E-02 |
| 43 | GO:0003777: microtubule motor activity | 3.49E-02 |
| 44 | GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups | 3.74E-02 |
| 45 | GO:0051082: unfolded protein binding | 4.17E-02 |
| 46 | GO:0019843: rRNA binding | 4.89E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0009507: chloroplast | 2.36E-19 |
| 2 | GO:0009535: chloroplast thylakoid membrane | 3.09E-07 |
| 3 | GO:0055035: plastid thylakoid membrane | 2.01E-05 |
| 4 | GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone) | 1.17E-04 |
| 5 | GO:0005845: mRNA cap binding complex | 1.20E-04 |
| 6 | GO:0005846: nuclear cap binding complex | 2.77E-04 |
| 7 | GO:0009528: plastid inner membrane | 4.58E-04 |
| 8 | GO:0005797: Golgi medial cisterna | 4.58E-04 |
| 9 | GO:0009536: plastid | 5.75E-04 |
| 10 | GO:1990726: Lsm1-7-Pat1 complex | 6.57E-04 |
| 11 | GO:0009526: plastid envelope | 8.72E-04 |
| 12 | GO:0030286: dynein complex | 8.72E-04 |
| 13 | GO:0097526: spliceosomal tri-snRNP complex | 1.10E-03 |
| 14 | GO:0005689: U12-type spliceosomal complex | 1.61E-03 |
| 15 | GO:0005801: cis-Golgi network | 1.61E-03 |
| 16 | GO:0009570: chloroplast stroma | 1.80E-03 |
| 17 | GO:0000123: histone acetyltransferase complex | 1.89E-03 |
| 18 | GO:0071004: U2-type prespliceosome | 2.19E-03 |
| 19 | GO:0005688: U6 snRNP | 2.19E-03 |
| 20 | GO:0071013: catalytic step 2 spliceosome | 3.88E-03 |
| 21 | GO:0005875: microtubule associated complex | 5.88E-03 |
| 22 | GO:0043234: protein complex | 5.88E-03 |
| 23 | GO:0042651: thylakoid membrane | 6.76E-03 |
| 24 | GO:0009532: plastid stroma | 7.22E-03 |
| 25 | GO:0009941: chloroplast envelope | 8.09E-03 |
| 26 | GO:0005744: mitochondrial inner membrane presequence translocase complex | 8.66E-03 |
| 27 | GO:0009707: chloroplast outer membrane | 1.85E-02 |
| 28 | GO:0031969: chloroplast membrane | 1.86E-02 |
| 29 | GO:0031201: SNARE complex | 2.48E-02 |
| 30 | GO:0031966: mitochondrial membrane | 3.09E-02 |
| 31 | GO:0005829: cytosol | 3.39E-02 |
| 32 | GO:0005732: small nucleolar ribonucleoprotein complex | 4.44E-02 |