co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT4G31115

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0009661: chromoplast organization	0.00E+00
2	GO:0032780: negative regulation of ATPase activity	0.00E+00
3	GO:0010343: singlet oxygen-mediated programmed cell death	0.00E+00
4	GO:0009583: detection of light stimulus	0.00E+00
5	GO:0046294: formaldehyde catabolic process	0.00E+00
6	GO:0071000: response to magnetism	0.00E+00
7	GO:0036172: thiamine salvage	0.00E+00
8	GO:0019279: L-methionine biosynthetic process from L-homoserine via cystathionine	0.00E+00
9	GO:0032928: regulation of superoxide anion generation	0.00E+00
10	GO:1904215: regulation of protein import into chloroplast stroma	0.00E+00
11	GO:0000304: response to singlet oxygen	4.05E-05
12	GO:0010117: photoprotection	4.05E-05
13	GO:0046283: anthocyanin-containing compound metabolic process	4.05E-05
14	GO:0048564: photosystem I assembly	1.43E-04
15	GO:0072387: flavin adenine dinucleotide metabolic process	1.82E-04
16	GO:0071461: cellular response to redox state	1.82E-04
17	GO:0006430: lysyl-tRNA aminoacylation	1.82E-04
18	GO:0080065: 4-alpha-methyl-delta7-sterol oxidation	1.82E-04
19	GO:0071266: 'de novo' L-methionine biosynthetic process	1.82E-04
20	GO:1902265: abscisic acid homeostasis	1.82E-04
21	GO:0006285: base-excision repair, AP site formation	1.82E-04
22	GO:0019343: cysteine biosynthetic process via cystathionine	1.82E-04
23	GO:0019346: transsulfuration	1.82E-04
24	GO:0006996: organelle organization	4.10E-04
25	GO:1904143: positive regulation of carotenoid biosynthetic process	4.10E-04
26	GO:0016122: xanthophyll metabolic process	4.10E-04
27	GO:0010275: NAD(P)H dehydrogenase complex assembly	4.10E-04
28	GO:1901529: positive regulation of anion channel activity	4.10E-04
29	GO:0060359: response to ammonium ion	4.10E-04
30	GO:0048255: mRNA stabilization	4.10E-04
31	GO:2000030: regulation of response to red or far red light	4.10E-04
32	GO:0080005: photosystem stoichiometry adjustment	4.10E-04
33	GO:0019388: galactose catabolic process	4.10E-04
34	GO:0010617: circadian regulation of calcium ion oscillation	4.10E-04
35	GO:0099402: plant organ development	4.10E-04
36	GO:0000162: tryptophan biosynthetic process	6.48E-04
37	GO:0009150: purine ribonucleotide metabolic process	6.69E-04
38	GO:0006696: ergosterol biosynthetic process	6.69E-04
39	GO:0010351: lithium ion transport	6.69E-04
40	GO:0043157: response to cation stress	6.69E-04
41	GO:0000394: RNA splicing, via endonucleolytic cleavage and ligation	6.69E-04
42	GO:0031022: nuclear migration along microfilament	6.69E-04
43	GO:1902448: positive regulation of shade avoidance	6.69E-04
44	GO:0006296: nucleotide-excision repair, DNA incision, 5'-to lesion	6.69E-04
45	GO:0006013: mannose metabolic process	6.69E-04
46	GO:1901672: positive regulation of systemic acquired resistance	6.69E-04
47	GO:0044210: 'de novo' CTP biosynthetic process	6.69E-04
48	GO:0016226: iron-sulfur cluster assembly	9.43E-04
49	GO:0009658: chloroplast organization	9.50E-04
50	GO:2001141: regulation of RNA biosynthetic process	9.55E-04
51	GO:0009399: nitrogen fixation	9.55E-04
52	GO:0009647: skotomorphogenesis	9.55E-04
53	GO:0009963: positive regulation of flavonoid biosynthetic process	9.55E-04
54	GO:1901332: negative regulation of lateral root development	9.55E-04
55	GO:0009590: detection of gravity	9.55E-04
56	GO:0009902: chloroplast relocation	1.27E-03
57	GO:0034613: cellular protein localization	1.27E-03
58	GO:0006542: glutamine biosynthetic process	1.27E-03
59	GO:0006552: leucine catabolic process	1.27E-03
60	GO:0009649: entrainment of circadian clock	1.27E-03
61	GO:1902347: response to strigolactone	1.27E-03
62	GO:0009229: thiamine diphosphate biosynthetic process	1.61E-03
63	GO:0016120: carotene biosynthetic process	1.61E-03
64	GO:0098719: sodium ion import across plasma membrane	1.61E-03
65	GO:0010304: PSII associated light-harvesting complex II catabolic process	1.98E-03
66	GO:0016070: RNA metabolic process	1.98E-03
67	GO:0009959: negative gravitropism	1.98E-03
68	GO:0006555: methionine metabolic process	1.98E-03
69	GO:0031053: primary miRNA processing	1.98E-03
70	GO:0045962: positive regulation of development, heterochronic	1.98E-03
71	GO:1901371: regulation of leaf morphogenesis	1.98E-03
72	GO:0060918: auxin transport	1.98E-03
73	GO:0009228: thiamine biosynthetic process	1.98E-03
74	GO:0009903: chloroplast avoidance movement	2.38E-03
75	GO:0010310: regulation of hydrogen peroxide metabolic process	2.38E-03
76	GO:0019509: L-methionine salvage from methylthioadenosine	2.38E-03
77	GO:0010244: response to low fluence blue light stimulus by blue low-fluence system	2.38E-03
78	GO:0051510: regulation of unidimensional cell growth	2.80E-03
79	GO:0015693: magnesium ion transport	2.80E-03
80	GO:0050821: protein stabilization	3.24E-03
81	GO:0009231: riboflavin biosynthetic process	3.24E-03
82	GO:0006102: isocitrate metabolic process	3.24E-03
83	GO:0045292: mRNA cis splicing, via spliceosome	3.24E-03
84	GO:0005978: glycogen biosynthetic process	3.24E-03
85	GO:0009787: regulation of abscisic acid-activated signaling pathway	3.24E-03
86	GO:0030091: protein repair	3.24E-03
87	GO:0009704: de-etiolation	3.24E-03
88	GO:0071482: cellular response to light stimulus	3.71E-03
89	GO:0019430: removal of superoxide radicals	3.71E-03
90	GO:0006508: proteolysis	3.76E-03
91	GO:0009637: response to blue light	4.05E-03
92	GO:0015780: nucleotide-sugar transport	4.20E-03
93	GO:0098656: anion transmembrane transport	4.20E-03
94	GO:0090305: nucleic acid phosphodiester bond hydrolysis	4.20E-03
95	GO:0051453: regulation of intracellular pH	4.71E-03
96	GO:1900426: positive regulation of defense response to bacterium	4.71E-03
97	GO:0009638: phototropism	4.71E-03
98	GO:0009098: leucine biosynthetic process	4.71E-03
99	GO:0009640: photomorphogenesis	5.21E-03
100	GO:0009688: abscisic acid biosynthetic process	5.24E-03
101	GO:0045036: protein targeting to chloroplast	5.24E-03
102	GO:0009641: shade avoidance	5.24E-03
103	GO:0006535: cysteine biosynthetic process from serine	5.24E-03
104	GO:0000103: sulfate assimilation	5.24E-03
105	GO:0048229: gametophyte development	5.79E-03
106	GO:0006879: cellular iron ion homeostasis	5.79E-03
107	GO:0006352: DNA-templated transcription, initiation	5.79E-03
108	GO:0009965: leaf morphogenesis	5.85E-03
109	GO:0006790: sulfur compound metabolic process	6.35E-03
110	GO:0045037: protein import into chloroplast stroma	6.35E-03
111	GO:0006006: glucose metabolic process	6.94E-03
112	GO:0050826: response to freezing	6.94E-03
113	GO:0010075: regulation of meristem growth	6.94E-03
114	GO:0009785: blue light signaling pathway	6.94E-03
115	GO:0030048: actin filament-based movement	6.94E-03
116	GO:0010207: photosystem II assembly	7.55E-03
117	GO:2000377: regulation of reactive oxygen species metabolic process	9.48E-03
118	GO:0019344: cysteine biosynthetic process	9.48E-03
119	GO:0046686: response to cadmium ion	9.94E-03
120	GO:0006418: tRNA aminoacylation for protein translation	1.02E-02
121	GO:0006012: galactose metabolic process	1.23E-02
122	GO:0006284: base-excision repair	1.31E-02
123	GO:0016117: carotenoid biosynthetic process	1.38E-02
124	GO:0010051: xylem and phloem pattern formation	1.46E-02
125	GO:0010087: phloem or xylem histogenesis	1.46E-02
126	GO:0010118: stomatal movement	1.46E-02
127	GO:0006814: sodium ion transport	1.62E-02
128	GO:0042752: regulation of circadian rhythm	1.62E-02
129	GO:0009646: response to absence of light	1.62E-02
130	GO:0019252: starch biosynthetic process	1.70E-02
131	GO:0009851: auxin biosynthetic process	1.70E-02
132	GO:0009791: post-embryonic development	1.70E-02
133	GO:0009630: gravitropism	1.87E-02
134	GO:0019761: glucosinolate biosynthetic process	1.87E-02
135	GO:1901657: glycosyl compound metabolic process	1.96E-02
136	GO:0030163: protein catabolic process	1.96E-02
137	GO:0006464: cellular protein modification process	2.05E-02
138	GO:0071805: potassium ion transmembrane transport	2.14E-02
139	GO:0016126: sterol biosynthetic process	2.32E-02
140	GO:0010027: thylakoid membrane organization	2.32E-02
141	GO:0010029: regulation of seed germination	2.42E-02
142	GO:0009816: defense response to bacterium, incompatible interaction	2.42E-02
143	GO:0035556: intracellular signal transduction	2.46E-02
144	GO:0042128: nitrate assimilation	2.51E-02
145	GO:0048573: photoperiodism, flowering	2.61E-02
146	GO:0018298: protein-chromophore linkage	2.81E-02
147	GO:0048481: plant ovule development	2.81E-02
148	GO:0006970: response to osmotic stress	2.89E-02
149	GO:0010218: response to far red light	3.01E-02
150	GO:0009407: toxin catabolic process	3.01E-02
151	GO:0010043: response to zinc ion	3.11E-02
152	GO:0007568: aging	3.11E-02
153	GO:0048527: lateral root development	3.11E-02
154	GO:0010119: regulation of stomatal movement	3.11E-02
155	GO:0009723: response to ethylene	3.11E-02
156	GO:0006457: protein folding	3.17E-02
157	GO:0006099: tricarboxylic acid cycle	3.43E-02
158	GO:0006897: endocytosis	3.76E-02
159	GO:0010114: response to red light	3.98E-02
160	GO:0009644: response to high light intensity	4.21E-02
161	GO:0008643: carbohydrate transport	4.21E-02
162	GO:0009751: response to salicylic acid	4.82E-02
163	GO:0009809: lignin biosynthetic process	4.92E-02
164	GO:0009585: red, far-red light phototransduction	4.92E-02

Rank	GO Term	Adjusted P value
1	GO:0042030: ATPase inhibitor activity	0.00E+00
2	GO:0004417: hydroxyethylthiazole kinase activity	0.00E+00
3	GO:0016767: geranylgeranyl-diphosphate geranylgeranyltransferase activity	0.00E+00
4	GO:0050486: intramolecular transferase activity, transferring hydroxy groups	0.00E+00
5	GO:0102996: beta,beta digalactosyldiacylglycerol galactosyltransferase activity	0.00E+00
6	GO:0018738: S-formylglutathione hydrolase activity	0.00E+00
7	GO:0046905: phytoene synthase activity	0.00E+00
8	GO:0004848: ureidoglycolate hydrolase activity	5.87E-06
9	GO:0000703: oxidized pyrimidine nucleobase lesion DNA N-glycosylase activity	1.82E-04
10	GO:0030941: chloroplast targeting sequence binding	1.82E-04
11	GO:0016784: 3-mercaptopyruvate sulfurtransferase activity	1.82E-04
12	GO:0004485: methylcrotonoyl-CoA carboxylase activity	1.82E-04
13	GO:0004123: cystathionine gamma-lyase activity	1.82E-04
14	GO:0046480: galactolipid galactosyltransferase activity	1.82E-04
15	GO:0080079: cellobiose glucosidase activity	1.82E-04
16	GO:0033984: indole-3-glycerol-phosphate lyase activity	1.82E-04
17	GO:0004824: lysine-tRNA ligase activity	1.82E-04
18	GO:0004719: protein-L-isoaspartate (D-aspartate) O-methyltransferase activity	1.82E-04
19	GO:0004048: anthranilate phosphoribosyltransferase activity	1.82E-04
20	GO:0004121: cystathionine beta-lyase activity	1.82E-04
21	GO:0051996: squalene synthase activity	1.82E-04
22	GO:0016783: sulfurtransferase activity	1.82E-04
23	GO:0071949: FAD binding	2.17E-04
24	GO:0016868: intramolecular transferase activity, phosphotransferases	4.10E-04
25	GO:0008686: 3,4-dihydroxy-2-butanone-4-phosphate synthase activity	4.10E-04
26	GO:0004046: aminoacylase activity	4.10E-04
27	GO:0004614: phosphoglucomutase activity	4.10E-04
28	GO:0004450: isocitrate dehydrogenase (NADP+) activity	4.10E-04
29	GO:0004310: farnesyl-diphosphate farnesyltransferase activity	4.10E-04
30	GO:0004180: carboxypeptidase activity	6.69E-04
31	GO:0010309: acireductone dioxygenase [iron(II)-requiring] activity	6.69E-04
32	GO:0032947: protein complex scaffold	6.69E-04
33	GO:0003861: 3-isopropylmalate dehydratase activity	6.69E-04
34	GO:0003962: cystathionine gamma-synthase activity	6.69E-04
35	GO:0003935: GTP cyclohydrolase II activity	6.69E-04
36	GO:0004075: biotin carboxylase activity	6.69E-04
37	GO:0000339: RNA cap binding	9.55E-04
38	GO:0009882: blue light photoreceptor activity	9.55E-04
39	GO:0047627: adenylylsulfatase activity	9.55E-04
40	GO:0009001: serine O-acetyltransferase activity	9.55E-04
41	GO:0000254: C-4 methylsterol oxidase activity	9.55E-04
42	GO:0004792: thiosulfate sulfurtransferase activity	9.55E-04
43	GO:0003883: CTP synthase activity	9.55E-04
44	GO:0001053: plastid sigma factor activity	1.27E-03
45	GO:0004834: tryptophan synthase activity	1.27E-03
46	GO:0051861: glycolipid binding	1.27E-03
47	GO:0019104: DNA N-glycosylase activity	1.27E-03
48	GO:0016987: sigma factor activity	1.27E-03
49	GO:0004356: glutamate-ammonia ligase activity	1.61E-03
50	GO:0016407: acetyltransferase activity	1.61E-03
51	GO:0015081: sodium ion transmembrane transporter activity	1.98E-03
52	GO:0004784: superoxide dismutase activity	1.98E-03
53	GO:0004559: alpha-mannosidase activity	2.38E-03
54	GO:0070300: phosphatidic acid binding	2.38E-03
55	GO:0005338: nucleotide-sugar transmembrane transporter activity	2.80E-03
56	GO:0016621: cinnamoyl-CoA reductase activity	2.80E-03
57	GO:0004034: aldose 1-epimerase activity	3.24E-03
58	GO:0004222: metalloendopeptidase activity	3.53E-03
59	GO:0004713: protein tyrosine kinase activity	5.24E-03
60	GO:0015386: potassium:proton antiporter activity	5.79E-03
61	GO:0046872: metal ion binding	5.83E-03
62	GO:0008378: galactosyltransferase activity	6.35E-03
63	GO:0008233: peptidase activity	6.63E-03
64	GO:0005315: inorganic phosphate transmembrane transporter activity	6.94E-03
65	GO:0015095: magnesium ion transmembrane transporter activity	6.94E-03
66	GO:0031072: heat shock protein binding	6.94E-03
67	GO:0016491: oxidoreductase activity	7.42E-03
68	GO:0004672: protein kinase activity	8.97E-03
69	GO:0051536: iron-sulfur cluster binding	9.48E-03
70	GO:0005528: FK506 binding	9.48E-03
71	GO:0051082: unfolded protein binding	1.00E-02
72	GO:0004176: ATP-dependent peptidase activity	1.09E-02
73	GO:0008514: organic anion transmembrane transporter activity	1.31E-02
74	GO:0004812: aminoacyl-tRNA ligase activity	1.38E-02
75	GO:0008536: Ran GTPase binding	1.54E-02
76	GO:0016853: isomerase activity	1.62E-02
77	GO:0050662: coenzyme binding	1.62E-02
78	GO:0048038: quinone binding	1.79E-02
79	GO:0004518: nuclease activity	1.87E-02
80	GO:0016887: ATPase activity	1.94E-02
81	GO:0015385: sodium:proton antiporter activity	1.96E-02
82	GO:0008237: metallopeptidase activity	2.14E-02
83	GO:0042802: identical protein binding	2.21E-02
84	GO:0000287: magnesium ion binding	2.64E-02
85	GO:0008236: serine-type peptidase activity	2.71E-02
86	GO:0005096: GTPase activator activity	2.91E-02
87	GO:0004693: cyclin-dependent protein serine/threonine kinase activity	3.01E-02
88	GO:0050897: cobalt ion binding	3.11E-02
89	GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	3.32E-02
90	GO:0008422: beta-glucosidase activity	3.54E-02
91	GO:0051539: 4 iron, 4 sulfur cluster binding	3.65E-02
92	GO:0004364: glutathione transferase activity	3.87E-02
93	GO:0004185: serine-type carboxypeptidase activity	3.98E-02
94	GO:0035091: phosphatidylinositol binding	4.21E-02
95	GO:0005524: ATP binding	4.30E-02
96	GO:0005198: structural molecule activity	4.32E-02
97	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	4.44E-02
98	GO:0051287: NAD binding	4.56E-02
99	GO:0003899: DNA-directed 5'-3' RNA polymerase activity	4.92E-02

Rank	GO Term	Adjusted P value
1	GO:0009507: chloroplast	1.26E-13
2	GO:0031969: chloroplast membrane	1.55E-07
3	GO:0009536: plastid	2.03E-05
4	GO:0031359: integral component of chloroplast outer membrane	1.11E-04
5	GO:0005845: mRNA cap binding complex	1.82E-04
6	GO:0000152: nuclear ubiquitin ligase complex	1.82E-04
7	GO:0042644: chloroplast nucleoid	2.17E-04
8	GO:0016604: nuclear body	2.59E-04
9	GO:0009707: chloroplast outer membrane	3.52E-04
10	GO:0005846: nuclear cap binding complex	4.10E-04
11	GO:0016605: PML body	6.69E-04
12	GO:0042651: thylakoid membrane	7.90E-04
13	GO:0042646: plastid nucleoid	9.55E-04
14	GO:0009570: chloroplast stroma	1.01E-03
15	GO:0009517: PSII associated light-harvesting complex II	1.27E-03
16	GO:0030140: trans-Golgi network transport vesicle	1.98E-03
17	GO:0009941: chloroplast envelope	3.38E-03
18	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	4.20E-03
19	GO:0009535: chloroplast thylakoid membrane	6.04E-03
20	GO:0005759: mitochondrial matrix	1.58E-02
21	GO:0032580: Golgi cisterna membrane	2.05E-02
22	GO:0010319: stromule	2.14E-02
23	GO:0009295: nucleoid	2.14E-02
24	GO:0005737: cytoplasm	2.35E-02
25	GO:0005777: peroxisome	2.73E-02
26	GO:0031966: mitochondrial membrane	4.68E-02
27	GO:0005829: cytosol	4.87E-02