Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT4G30950

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0006429: leucyl-tRNA aminoacylation0.00E+00
2GO:1905421: regulation of plant organ morphogenesis0.00E+00
3GO:0002184: cytoplasmic translational termination0.00E+00
4GO:0030155: regulation of cell adhesion0.00E+00
5GO:0017038: protein import0.00E+00
6GO:0061635: regulation of protein complex stability0.00E+00
7GO:0080114: positive regulation of glycine hydroxymethyltransferase activity0.00E+00
8GO:0046838: phosphorylated carbohydrate dephosphorylation0.00E+00
9GO:0006428: isoleucyl-tRNA aminoacylation0.00E+00
10GO:2000042: negative regulation of double-strand break repair via homologous recombination0.00E+00
11GO:0005996: monosaccharide metabolic process0.00E+00
12GO:0015717: triose phosphate transport0.00E+00
13GO:0006003: fructose 2,6-bisphosphate metabolic process0.00E+00
14GO:0016118: carotenoid catabolic process0.00E+00
15GO:1903428: positive regulation of reactive oxygen species biosynthetic process0.00E+00
16GO:0015979: photosynthesis8.68E-16
17GO:0010027: thylakoid membrane organization2.38E-14
18GO:0032544: plastid translation7.72E-12
19GO:0006412: translation1.26E-09
20GO:0009773: photosynthetic electron transport in photosystem I1.11E-08
21GO:0006000: fructose metabolic process3.42E-08
22GO:0010196: nonphotochemical quenching5.43E-08
23GO:0042254: ribosome biogenesis1.13E-07
24GO:0010206: photosystem II repair2.64E-07
25GO:0009658: chloroplast organization1.43E-06
26GO:0010207: photosystem II assembly2.15E-06
27GO:0030388: fructose 1,6-bisphosphate metabolic process4.48E-06
28GO:0015995: chlorophyll biosynthetic process5.27E-06
29GO:0009768: photosynthesis, light harvesting in photosystem I5.74E-06
30GO:0018298: protein-chromophore linkage6.86E-06
31GO:0009735: response to cytokinin9.62E-06
32GO:0006002: fructose 6-phosphate metabolic process1.28E-05
33GO:0016117: carotenoid biosynthetic process1.49E-05
34GO:0005983: starch catabolic process4.93E-05
35GO:0006094: gluconeogenesis6.06E-05
36GO:0019464: glycine decarboxylation via glycine cleavage system6.35E-05
37GO:0006546: glycine catabolic process6.35E-05
38GO:0010021: amylopectin biosynthetic process6.35E-05
39GO:0009409: response to cold9.69E-05
40GO:0010236: plastoquinone biosynthetic process1.00E-04
41GO:0006418: tRNA aminoacylation for protein translation1.40E-04
42GO:0042549: photosystem II stabilization1.45E-04
43GO:0042742: defense response to bacterium1.52E-04
44GO:0055114: oxidation-reduction process1.92E-04
45GO:1901259: chloroplast rRNA processing1.97E-04
46GO:0009645: response to low light intensity stimulus2.57E-04
47GO:0009769: photosynthesis, light harvesting in photosystem II2.57E-04
48GO:0006438: valyl-tRNA aminoacylation3.14E-04
49GO:0043953: protein transport by the Tat complex3.14E-04
50GO:0065002: intracellular protein transmembrane transport3.14E-04
51GO:0080093: regulation of photorespiration3.14E-04
52GO:0043609: regulation of carbon utilization3.14E-04
53GO:0043007: maintenance of rDNA3.14E-04
54GO:0031998: regulation of fatty acid beta-oxidation3.14E-04
55GO:1902458: positive regulation of stomatal opening3.14E-04
56GO:0034337: RNA folding3.14E-04
57GO:0005978: glycogen biosynthetic process3.24E-04
58GO:0019252: starch biosynthetic process3.89E-04
59GO:0015996: chlorophyll catabolic process3.98E-04
60GO:0010270: photosystem II oxygen evolving complex assembly6.87E-04
61GO:0035304: regulation of protein dephosphorylation6.87E-04
62GO:0016124: xanthophyll catabolic process6.87E-04
63GO:0019388: galactose catabolic process6.87E-04
64GO:0018026: peptidyl-lysine monomethylation6.87E-04
65GO:0097054: L-glutamate biosynthetic process6.87E-04
66GO:0016121: carotene catabolic process6.87E-04
67GO:1903426: regulation of reactive oxygen species biosynthetic process6.87E-04
68GO:0019684: photosynthesis, light reaction7.62E-04
69GO:0045037: protein import into chloroplast stroma8.70E-04
70GO:0005986: sucrose biosynthetic process9.84E-04
71GO:0006006: glucose metabolic process9.84E-04
72GO:0048281: inflorescence morphogenesis1.11E-03
73GO:0090391: granum assembly1.11E-03
74GO:0006518: peptide metabolic process1.11E-03
75GO:0010581: regulation of starch biosynthetic process1.11E-03
76GO:0035436: triose phosphate transmembrane transport1.11E-03
77GO:0019253: reductive pentose-phosphate cycle1.11E-03
78GO:0016050: vesicle organization1.11E-03
79GO:0009416: response to light stimulus1.47E-03
80GO:0009793: embryo development ending in seed dormancy1.50E-03
81GO:0071484: cellular response to light intensity1.60E-03
82GO:0006537: glutamate biosynthetic process1.60E-03
83GO:0009590: detection of gravity1.60E-03
84GO:0010148: transpiration1.60E-03
85GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly1.60E-03
86GO:0009644: response to high light intensity1.94E-03
87GO:0035428: hexose transmembrane transport2.02E-03
88GO:0051322: anaphase2.14E-03
89GO:0045727: positive regulation of translation2.14E-03
90GO:0030104: water homeostasis2.14E-03
91GO:0015994: chlorophyll metabolic process2.14E-03
92GO:0015713: phosphoglycerate transport2.14E-03
93GO:0006808: regulation of nitrogen utilization2.14E-03
94GO:0010109: regulation of photosynthesis2.14E-03
95GO:0019676: ammonia assimilation cycle2.14E-03
96GO:0015976: carbon utilization2.14E-03
97GO:0016123: xanthophyll biosynthetic process2.74E-03
98GO:0032543: mitochondrial translation2.74E-03
99GO:0016120: carotene biosynthetic process2.74E-03
100GO:0045038: protein import into chloroplast thylakoid membrane2.74E-03
101GO:0006097: glyoxylate cycle2.74E-03
102GO:0006461: protein complex assembly2.74E-03
103GO:0046323: glucose import3.01E-03
104GO:0006096: glycolytic process3.18E-03
105GO:0006814: sodium ion transport3.24E-03
106GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway3.38E-03
107GO:0000470: maturation of LSU-rRNA3.38E-03
108GO:0042793: transcription from plastid promoter3.38E-03
109GO:0010190: cytochrome b6f complex assembly3.38E-03
110GO:0006828: manganese ion transport3.38E-03
111GO:0009635: response to herbicide3.38E-03
112GO:0009643: photosynthetic acclimation3.38E-03
113GO:0010304: PSII associated light-harvesting complex II catabolic process3.38E-03
114GO:0009955: adaxial/abaxial pattern specification4.06E-03
115GO:0010189: vitamin E biosynthetic process4.06E-03
116GO:0009772: photosynthetic electron transport in photosystem II4.80E-03
117GO:0071446: cellular response to salicylic acid stimulus4.80E-03
118GO:0070370: cellular heat acclimation4.80E-03
119GO:0010103: stomatal complex morphogenesis4.80E-03
120GO:0006605: protein targeting5.57E-03
121GO:2000070: regulation of response to water deprivation5.57E-03
122GO:0019430: removal of superoxide radicals6.39E-03
123GO:0001558: regulation of cell growth6.39E-03
124GO:0007186: G-protein coupled receptor signaling pathway6.39E-03
125GO:0006526: arginine biosynthetic process6.39E-03
126GO:0009657: plastid organization6.39E-03
127GO:2000031: regulation of salicylic acid mediated signaling pathway6.39E-03
128GO:0009790: embryo development6.53E-03
129GO:0006098: pentose-phosphate shunt7.24E-03
130GO:0090333: regulation of stomatal closure7.24E-03
131GO:0006499: N-terminal protein myristoylation7.74E-03
132GO:0010205: photoinhibition8.14E-03
133GO:0010380: regulation of chlorophyll biosynthetic process8.14E-03
134GO:0005982: starch metabolic process8.14E-03
135GO:0031627: telomeric loop formation9.07E-03
136GO:0048829: root cap development9.07E-03
137GO:0006816: calcium ion transport1.00E-02
138GO:0009073: aromatic amino acid family biosynthetic process1.00E-02
139GO:0043085: positive regulation of catalytic activity1.00E-02
140GO:0000272: polysaccharide catabolic process1.00E-02
141GO:0009750: response to fructose1.00E-02
142GO:0018119: peptidyl-cysteine S-nitrosylation1.00E-02
143GO:0006415: translational termination1.00E-02
144GO:0009744: response to sucrose1.15E-02
145GO:0009767: photosynthetic electron transport chain1.21E-02
146GO:0010628: positive regulation of gene expression1.21E-02
147GO:0006108: malate metabolic process1.21E-02
148GO:0006302: double-strand break repair1.32E-02
149GO:0010020: chloroplast fission1.32E-02
150GO:0046686: response to cadmium ion1.41E-02
151GO:0005985: sucrose metabolic process1.43E-02
152GO:0006364: rRNA processing1.55E-02
153GO:0009944: polarity specification of adaxial/abaxial axis1.66E-02
154GO:0000027: ribosomal large subunit assembly1.66E-02
155GO:0051302: regulation of cell division1.78E-02
156GO:0061077: chaperone-mediated protein folding1.91E-02
157GO:0009269: response to desiccation1.91E-02
158GO:0051321: meiotic cell cycle1.91E-02
159GO:0016114: terpenoid biosynthetic process1.91E-02
160GO:0016226: iron-sulfur cluster assembly2.03E-02
161GO:0071215: cellular response to abscisic acid stimulus2.16E-02
162GO:0001944: vasculature development2.16E-02
163GO:0006284: base-excision repair2.29E-02
164GO:0009561: megagametogenesis2.29E-02
165GO:0045454: cell redox homeostasis2.33E-02
166GO:0042631: cellular response to water deprivation2.57E-02
167GO:0055085: transmembrane transport2.67E-02
168GO:0006520: cellular amino acid metabolic process2.71E-02
169GO:0010182: sugar mediated signaling pathway2.71E-02
170GO:0009646: response to absence of light2.85E-02
171GO:0006281: DNA repair3.02E-02
172GO:0000302: response to reactive oxygen species3.15E-02
173GO:0071554: cell wall organization or biogenesis3.15E-02
174GO:0042744: hydrogen peroxide catabolic process3.16E-02
175GO:0030163: protein catabolic process3.45E-02
176GO:0010090: trichome morphogenesis3.45E-02
177GO:0006810: transport3.48E-02
178GO:0009567: double fertilization forming a zygote and endosperm3.61E-02
179GO:0007623: circadian rhythm3.83E-02
180GO:0000910: cytokinesis3.92E-02
181GO:0016311: dephosphorylation4.76E-02
182GO:0048481: plant ovule development4.93E-02
183GO:0009817: defense response to fungus, incompatible interaction4.93E-02
RankGO TermAdjusted P value
1GO:0010356: homogentisate geranylgeranyltransferase activity0.00E+00
2GO:0030504: inorganic diphosphate transmembrane transporter activity0.00E+00
3GO:0033728: divinyl chlorophyllide a 8-vinyl-reductase activity0.00E+00
4GO:0010357: homogentisate solanesyltransferase activity0.00E+00
5GO:0050515: 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase activity0.00E+00
6GO:0004331: fructose-2,6-bisphosphate 2-phosphatase activity0.00E+00
7GO:0102550: 2-methyl-6-geranylgeranyl-1,4-benzoquinol methyltransferase activity0.00E+00
8GO:0003873: 6-phosphofructo-2-kinase activity0.00E+00
9GO:0051744: 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity0.00E+00
10GO:0004823: leucine-tRNA ligase activity0.00E+00
11GO:0016166: phytoene dehydrogenase activity0.00E+00
12GO:0016730: oxidoreductase activity, acting on iron-sulfur proteins as donors0.00E+00
13GO:0004822: isoleucine-tRNA ligase activity0.00E+00
14GO:0046408: chlorophyll synthetase activity0.00E+00
15GO:0010355: homogentisate farnesyltransferase activity0.00E+00
16GO:0051738: xanthophyll binding0.00E+00
17GO:0019843: rRNA binding2.33E-21
18GO:0003735: structural constituent of ribosome2.10E-11
19GO:0016851: magnesium chelatase activity1.66E-07
20GO:0008266: poly(U) RNA binding2.15E-06
21GO:0031409: pigment binding3.62E-06
22GO:0016168: chlorophyll binding3.97E-06
23GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity4.48E-06
24GO:0002161: aminoacyl-tRNA editing activity1.59E-05
25GO:0004375: glycine dehydrogenase (decarboxylating) activity3.55E-05
26GO:2001070: starch binding1.45E-04
27GO:0004812: aminoacyl-tRNA ligase activity2.61E-04
28GO:0003942: N-acetyl-gamma-glutamyl-phosphate reductase activity3.14E-04
29GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity3.14E-04
30GO:0050308: sugar-phosphatase activity3.14E-04
31GO:0019203: carbohydrate phosphatase activity3.14E-04
32GO:0045157: electron transporter, transferring electrons within the noncyclic electron transport pathway of photosynthesis activity3.14E-04
33GO:0010242: oxygen evolving activity3.14E-04
34GO:0034256: chlorophyll(ide) b reductase activity3.14E-04
35GO:0004832: valine-tRNA ligase activity3.14E-04
36GO:0016041: glutamate synthase (ferredoxin) activity3.14E-04
37GO:0051741: 2-methyl-6-phytyl-1,4-benzoquinone methyltransferase activity3.14E-04
38GO:0016491: oxidoreductase activity3.41E-04
39GO:0033201: alpha-1,4-glucan synthase activity6.87E-04
40GO:0003844: 1,4-alpha-glucan branching enzyme activity6.87E-04
41GO:0004614: phosphoglucomutase activity6.87E-04
42GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity6.87E-04
43GO:0010291: carotene beta-ring hydroxylase activity6.87E-04
44GO:0008967: phosphoglycolate phosphatase activity6.87E-04
45GO:0047746: chlorophyllase activity6.87E-04
46GO:0010297: heteropolysaccharide binding6.87E-04
47GO:0009977: proton motive force dependent protein transmembrane transporter activity6.87E-04
48GO:0031072: heat shock protein binding9.84E-04
49GO:0016765: transferase activity, transferring alkyl or aryl (other than methyl) groups1.11E-03
50GO:0015462: ATPase-coupled protein transmembrane transporter activity1.11E-03
51GO:0004324: ferredoxin-NADP+ reductase activity1.11E-03
52GO:0043169: cation binding1.11E-03
53GO:0004373: glycogen (starch) synthase activity1.11E-03
54GO:0017150: tRNA dihydrouridine synthase activity1.11E-03
55GO:0003913: DNA photolyase activity1.11E-03
56GO:0071917: triose-phosphate transmembrane transporter activity1.11E-03
57GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor1.11E-03
58GO:0005528: FK506 binding1.52E-03
59GO:0008508: bile acid:sodium symporter activity1.60E-03
60GO:0004742: dihydrolipoyllysine-residue acetyltransferase activity1.60E-03
61GO:0016149: translation release factor activity, codon specific1.60E-03
62GO:0043023: ribosomal large subunit binding1.60E-03
63GO:0004365: glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity1.60E-03
64GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor2.14E-03
65GO:0009011: starch synthase activity2.14E-03
66GO:0019199: transmembrane receptor protein kinase activity2.14E-03
67GO:0042277: peptide binding2.14E-03
68GO:0015120: phosphoglycerate transmembrane transporter activity2.14E-03
69GO:0016279: protein-lysine N-methyltransferase activity2.14E-03
70GO:0022891: substrate-specific transmembrane transporter activity2.20E-03
71GO:0008725: DNA-3-methyladenine glycosylase activity2.74E-03
72GO:0003959: NADPH dehydrogenase activity2.74E-03
73GO:0004040: amidase activity2.74E-03
74GO:0051538: 3 iron, 4 sulfur cluster binding2.74E-03
75GO:0045549: 9-cis-epoxycarotenoid dioxygenase activity2.74E-03
76GO:0005355: glucose transmembrane transporter activity3.24E-03
77GO:0050662: coenzyme binding3.24E-03
78GO:0004332: fructose-bisphosphate aldolase activity3.38E-03
79GO:0004130: cytochrome-c peroxidase activity3.38E-03
80GO:0016615: malate dehydrogenase activity3.38E-03
81GO:0051920: peroxiredoxin activity4.06E-03
82GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity4.06E-03
83GO:0030060: L-malate dehydrogenase activity4.06E-03
84GO:0009881: photoreceptor activity4.80E-03
85GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen5.55E-03
86GO:0016209: antioxidant activity5.57E-03
87GO:0004033: aldo-keto reductase (NADP) activity5.57E-03
88GO:0005337: nucleoside transmembrane transporter activity5.57E-03
89GO:0008236: serine-type peptidase activity6.67E-03
90GO:0015144: carbohydrate transmembrane transporter activity6.74E-03
91GO:0071949: FAD binding7.24E-03
92GO:0008138: protein tyrosine/serine/threonine phosphatase activity7.24E-03
93GO:0003747: translation release factor activity7.24E-03
94GO:0004222: metalloendopeptidase activity7.74E-03
95GO:0005351: sugar:proton symporter activity7.85E-03
96GO:0005384: manganese ion transmembrane transporter activity8.14E-03
97GO:0008047: enzyme activator activity9.07E-03
98GO:0004161: dimethylallyltranstransferase activity1.00E-02
99GO:0003691: double-stranded telomeric DNA binding1.00E-02
100GO:0000049: tRNA binding1.11E-02
101GO:0004565: beta-galactosidase activity1.21E-02
102GO:0005315: inorganic phosphate transmembrane transporter activity1.21E-02
103GO:0004089: carbonate dehydratase activity1.21E-02
104GO:0015095: magnesium ion transmembrane transporter activity1.21E-02
105GO:0003755: peptidyl-prolyl cis-trans isomerase activity1.34E-02
106GO:0000287: magnesium ion binding1.38E-02
107GO:0051287: NAD binding1.40E-02
108GO:0051536: iron-sulfur cluster binding1.66E-02
109GO:0008408: 3'-5' exonuclease activity1.91E-02
110GO:0051082: unfolded protein binding2.22E-02
111GO:0008514: organic anion transmembrane transporter activity2.29E-02
112GO:0003756: protein disulfide isomerase activity2.29E-02
113GO:0004791: thioredoxin-disulfide reductase activity2.85E-02
114GO:0004252: serine-type endopeptidase activity3.08E-02
115GO:0048038: quinone binding3.15E-02
116GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor3.45E-02
117GO:0005515: protein binding3.61E-02
118GO:0008237: metallopeptidase activity3.77E-02
119GO:0016413: O-acetyltransferase activity3.92E-02
120GO:0005509: calcium ion binding4.68E-02
121GO:0008757: S-adenosylmethionine-dependent methyltransferase activity4.76E-02
RankGO TermAdjusted P value
1GO:0043235: receptor complex0.00E+00
2GO:0098572: stromal side of plastid thylakoid membrane0.00E+00
3GO:0005943: phosphatidylinositol 3-kinase complex, class IA0.00E+00
4GO:0044391: ribosomal subunit0.00E+00
5GO:0042579: microbody0.00E+00
6GO:0009507: chloroplast3.32E-89
7GO:0009534: chloroplast thylakoid2.64E-60
8GO:0009535: chloroplast thylakoid membrane4.73E-57
9GO:0009941: chloroplast envelope1.35E-55
10GO:0009570: chloroplast stroma6.91E-53
11GO:0009579: thylakoid5.24E-31
12GO:0005840: ribosome4.67E-16
13GO:0009543: chloroplast thylakoid lumen1.94E-13
14GO:0010287: plastoglobule4.17E-12
15GO:0031977: thylakoid lumen3.91E-11
16GO:0030095: chloroplast photosystem II4.60E-10
17GO:0031969: chloroplast membrane1.89E-08
18GO:0009508: plastid chromosome2.52E-08
19GO:0009706: chloroplast inner membrane2.89E-08
20GO:0010007: magnesium chelatase complex3.42E-08
21GO:0010319: stromule7.97E-08
22GO:0016020: membrane3.91E-07
23GO:0048046: apoplast7.25E-07
24GO:0009295: nucleoid2.51E-06
25GO:0000427: plastid-encoded plastid RNA polymerase complex4.48E-06
26GO:0009654: photosystem II oxygen evolving complex5.74E-06
27GO:0009522: photosystem I2.39E-05
28GO:0009523: photosystem II2.77E-05
29GO:0019898: extrinsic component of membrane2.77E-05
30GO:0005960: glycine cleavage complex3.55E-05
31GO:0009517: PSII associated light-harvesting complex II6.35E-05
32GO:0030076: light-harvesting complex8.78E-05
33GO:0042651: thylakoid membrane1.40E-04
34GO:0009533: chloroplast stromal thylakoid2.57E-04
35GO:0009536: plastid2.78E-04
36GO:0031361: integral component of thylakoid membrane3.14E-04
37GO:0009782: photosystem I antenna complex3.14E-04
38GO:0000791: euchromatin3.14E-04
39GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex3.14E-04
40GO:0009783: photosystem II antenna complex3.14E-04
41GO:0009515: granal stacked thylakoid3.14E-04
42GO:0009547: plastid ribosome3.14E-04
43GO:0009538: photosystem I reaction center3.24E-04
44GO:0009501: amyloplast3.24E-04
45GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)4.78E-04
46GO:0030093: chloroplast photosystem I6.87E-04
47GO:0030870: Mre11 complex6.87E-04
48GO:0043036: starch grain6.87E-04
49GO:0009528: plastid inner membrane1.11E-03
50GO:0033281: TAT protein transport complex1.11E-03
51GO:0009509: chromoplast1.11E-03
52GO:0015934: large ribosomal subunit1.14E-03
53GO:0009527: plastid outer membrane2.14E-03
54GO:0000795: synaptonemal complex2.74E-03
55GO:0055035: plastid thylakoid membrane2.74E-03
56GO:0000783: nuclear telomere cap complex6.39E-03
57GO:0042644: chloroplast nucleoid7.24E-03
58GO:0005763: mitochondrial small ribosomal subunit7.24E-03
59GO:0032040: small-subunit processome1.11E-02
60GO:0000311: plastid large ribosomal subunit1.11E-02
61GO:0009574: preprophase band1.21E-02
62GO:0022626: cytosolic ribosome1.76E-02
63GO:0015935: small ribosomal subunit1.91E-02
64GO:0009532: plastid stroma1.91E-02
65GO:0022625: cytosolic large ribosomal subunit1.98E-02
66GO:0000785: chromatin3.30E-02
67GO:0016021: integral component of membrane4.86E-02
68GO:0009707: chloroplast outer membrane4.93E-02
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Gene type



Gene DE type