GO Enrichment Analysis of Co-expressed Genes with
AT4G30800
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0000495: box H/ACA snoRNA 3'-end processing | 0.00E+00 |
| 2 | GO:0072321: chaperone-mediated protein transport | 0.00E+00 |
| 3 | GO:0071433: cell wall repair | 0.00E+00 |
| 4 | GO:0044843: cell cycle G1/S phase transition | 0.00E+00 |
| 5 | GO:0071731: response to nitric oxide | 0.00E+00 |
| 6 | GO:1990481: mRNA pseudouridine synthesis | 0.00E+00 |
| 7 | GO:0000466: maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | 0.00E+00 |
| 8 | GO:0051050: positive regulation of transport | 0.00E+00 |
| 9 | GO:0006412: translation | 4.85E-19 |
| 10 | GO:0006364: rRNA processing | 1.02E-15 |
| 11 | GO:0042254: ribosome biogenesis | 2.17E-15 |
| 12 | GO:0000470: maturation of LSU-rRNA | 3.88E-07 |
| 13 | GO:0000028: ribosomal small subunit assembly | 1.72E-06 |
| 14 | GO:0010162: seed dormancy process | 6.47E-06 |
| 15 | GO:0000460: maturation of 5.8S rRNA | 2.06E-05 |
| 16 | GO:0042273: ribosomal large subunit biogenesis | 2.06E-05 |
| 17 | GO:0000027: ribosomal large subunit assembly | 2.87E-05 |
| 18 | GO:0000462: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | 6.99E-05 |
| 19 | GO:0009553: embryo sac development | 1.47E-04 |
| 20 | GO:0006169: adenosine salvage | 1.62E-04 |
| 21 | GO:0006407: rRNA export from nucleus | 1.62E-04 |
| 22 | GO:0031120: snRNA pseudouridine synthesis | 1.62E-04 |
| 23 | GO:0031118: rRNA pseudouridine synthesis | 1.62E-04 |
| 24 | GO:0030490: maturation of SSU-rRNA | 1.62E-04 |
| 25 | GO:0000494: box C/D snoRNA 3'-end processing | 1.62E-04 |
| 26 | GO:0000461: endonucleolytic cleavage to generate mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | 1.62E-04 |
| 27 | GO:0000447: endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | 1.62E-04 |
| 28 | GO:0043985: histone H4-R3 methylation | 1.62E-04 |
| 29 | GO:1990258: histone glutamine methylation | 1.62E-04 |
| 30 | GO:0045041: protein import into mitochondrial intermembrane space | 3.69E-04 |
| 31 | GO:0034470: ncRNA processing | 3.69E-04 |
| 32 | GO:0048569: post-embryonic animal organ development | 3.69E-04 |
| 33 | GO:0009967: positive regulation of signal transduction | 3.69E-04 |
| 34 | GO:0000463: maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | 3.69E-04 |
| 35 | GO:0006626: protein targeting to mitochondrion | 3.96E-04 |
| 36 | GO:1902626: assembly of large subunit precursor of preribosome | 6.04E-04 |
| 37 | GO:0042256: mature ribosome assembly | 6.04E-04 |
| 38 | GO:0045039: protein import into mitochondrial inner membrane | 6.04E-04 |
| 39 | GO:0009944: polarity specification of adaxial/abaxial axis | 6.16E-04 |
| 40 | GO:0007005: mitochondrion organization | 8.11E-04 |
| 41 | GO:0009855: determination of bilateral symmetry | 8.63E-04 |
| 42 | GO:0051131: chaperone-mediated protein complex assembly | 8.63E-04 |
| 43 | GO:0009294: DNA mediated transformation | 8.83E-04 |
| 44 | GO:0071215: cellular response to abscisic acid stimulus | 8.83E-04 |
| 45 | GO:0009561: megagametogenesis | 9.56E-04 |
| 46 | GO:0016569: covalent chromatin modification | 1.13E-03 |
| 47 | GO:0006479: protein methylation | 1.14E-03 |
| 48 | GO:1900864: mitochondrial RNA modification | 1.14E-03 |
| 49 | GO:0042274: ribosomal small subunit biogenesis | 1.14E-03 |
| 50 | GO:0097428: protein maturation by iron-sulfur cluster transfer | 1.45E-03 |
| 51 | GO:0044209: AMP salvage | 1.45E-03 |
| 52 | GO:0031167: rRNA methylation | 1.45E-03 |
| 53 | GO:0006458: 'de novo' protein folding | 2.14E-03 |
| 54 | GO:0009955: adaxial/abaxial pattern specification | 2.14E-03 |
| 55 | GO:0042026: protein refolding | 2.14E-03 |
| 56 | GO:0000054: ribosomal subunit export from nucleus | 2.14E-03 |
| 57 | GO:0080186: developmental vegetative growth | 2.52E-03 |
| 58 | GO:0042255: ribosome assembly | 2.91E-03 |
| 59 | GO:0001558: regulation of cell growth | 3.33E-03 |
| 60 | GO:0001510: RNA methylation | 3.33E-03 |
| 61 | GO:1900865: chloroplast RNA modification | 4.22E-03 |
| 62 | GO:0030422: production of siRNA involved in RNA interference | 4.69E-03 |
| 63 | GO:0006879: cellular iron ion homeostasis | 5.19E-03 |
| 64 | GO:0010030: positive regulation of seed germination | 7.32E-03 |
| 65 | GO:0051302: regulation of cell division | 9.09E-03 |
| 66 | GO:0061077: chaperone-mediated protein folding | 9.72E-03 |
| 67 | GO:0016226: iron-sulfur cluster assembly | 1.04E-02 |
| 68 | GO:0008033: tRNA processing | 1.31E-02 |
| 69 | GO:0010501: RNA secondary structure unwinding | 1.31E-02 |
| 70 | GO:0000413: protein peptidyl-prolyl isomerization | 1.31E-02 |
| 71 | GO:0010197: polar nucleus fusion | 1.38E-02 |
| 72 | GO:0009960: endosperm development | 1.38E-02 |
| 73 | GO:0006413: translational initiation | 1.38E-02 |
| 74 | GO:0016032: viral process | 1.67E-02 |
| 75 | GO:0032502: developmental process | 1.67E-02 |
| 76 | GO:0009735: response to cytokinin | 1.68E-02 |
| 77 | GO:0016049: cell growth | 2.42E-02 |
| 78 | GO:0046686: response to cadmium ion | 2.51E-02 |
| 79 | GO:0006457: protein folding | 2.60E-02 |
| 80 | GO:0048527: lateral root development | 2.78E-02 |
| 81 | GO:0006099: tricarboxylic acid cycle | 3.06E-02 |
| 82 | GO:0006414: translational elongation | 3.10E-02 |
| 83 | GO:0045892: negative regulation of transcription, DNA-templated | 3.45E-02 |
| 84 | GO:0000154: rRNA modification | 3.86E-02 |
| 85 | GO:0048364: root development | 4.36E-02 |
| 86 | GO:0010224: response to UV-B | 4.50E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0016018: cyclosporin A binding | 0.00E+00 |
| 2 | GO:0003963: RNA-3'-phosphate cyclase activity | 0.00E+00 |
| 3 | GO:0003735: structural constituent of ribosome | 1.96E-25 |
| 4 | GO:0003723: RNA binding | 6.65E-15 |
| 5 | GO:0030515: snoRNA binding | 6.20E-09 |
| 6 | GO:0000166: nucleotide binding | 2.78E-07 |
| 7 | GO:0004407: histone deacetylase activity | 5.73E-07 |
| 8 | GO:0048037: cofactor binding | 1.62E-04 |
| 9 | GO:1990259: histone-glutamine methyltransferase activity | 1.62E-04 |
| 10 | GO:0042134: rRNA primary transcript binding | 1.62E-04 |
| 11 | GO:0004001: adenosine kinase activity | 1.62E-04 |
| 12 | GO:0008026: ATP-dependent helicase activity | 1.71E-04 |
| 13 | GO:0019843: rRNA binding | 2.27E-04 |
| 14 | GO:0001054: RNA polymerase I activity | 3.02E-04 |
| 15 | GO:0044183: protein binding involved in protein folding | 3.02E-04 |
| 16 | GO:0001056: RNA polymerase III activity | 3.48E-04 |
| 17 | GO:0004776: succinate-CoA ligase (GDP-forming) activity | 3.69E-04 |
| 18 | GO:0036455: iron-sulfur transferase activity | 3.69E-04 |
| 19 | GO:0043021: ribonucleoprotein complex binding | 3.69E-04 |
| 20 | GO:0004775: succinate-CoA ligase (ADP-forming) activity | 3.69E-04 |
| 21 | GO:0005078: MAP-kinase scaffold activity | 3.69E-04 |
| 22 | GO:0003746: translation elongation factor activity | 3.91E-04 |
| 23 | GO:0008649: rRNA methyltransferase activity | 6.04E-04 |
| 24 | GO:0070181: small ribosomal subunit rRNA binding | 6.04E-04 |
| 25 | GO:0043023: ribosomal large subunit binding | 8.63E-04 |
| 26 | GO:0008198: ferrous iron binding | 1.45E-03 |
| 27 | GO:0003729: mRNA binding | 1.97E-03 |
| 28 | GO:0008235: metalloexopeptidase activity | 2.52E-03 |
| 29 | GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity | 2.74E-03 |
| 30 | GO:0043022: ribosome binding | 2.91E-03 |
| 31 | GO:0008135: translation factor activity, RNA binding | 3.33E-03 |
| 32 | GO:0001055: RNA polymerase II activity | 4.22E-03 |
| 33 | GO:0003676: nucleic acid binding | 5.00E-03 |
| 34 | GO:0000049: tRNA binding | 5.69E-03 |
| 35 | GO:0003899: DNA-directed 5'-3' RNA polymerase activity | 5.99E-03 |
| 36 | GO:0009982: pseudouridine synthase activity | 6.22E-03 |
| 37 | GO:0005507: copper ion binding | 7.59E-03 |
| 38 | GO:0051082: unfolded protein binding | 8.52E-03 |
| 39 | GO:0003924: GTPase activity | 9.08E-03 |
| 40 | GO:0016787: hydrolase activity | 1.31E-02 |
| 41 | GO:0004527: exonuclease activity | 1.38E-02 |
| 42 | GO:0003743: translation initiation factor activity | 1.73E-02 |
| 43 | GO:0008168: methyltransferase activity | 2.21E-02 |
| 44 | GO:0004004: ATP-dependent RNA helicase activity | 2.33E-02 |
| 45 | GO:0050897: cobalt ion binding | 2.78E-02 |
| 46 | GO:0000987: core promoter proximal region sequence-specific DNA binding | 3.06E-02 |
| 47 | GO:0051539: 4 iron, 4 sulfur cluster binding | 3.26E-02 |
| 48 | GO:0051537: 2 iron, 2 sulfur cluster binding | 3.76E-02 |
| 49 | GO:0005198: structural molecule activity | 3.86E-02 |
| 50 | GO:0003755: peptidyl-prolyl cis-trans isomerase activity | 3.97E-02 |
| 51 | GO:0004519: endonuclease activity | 4.54E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0034457: Mpp10 complex | 0.00E+00 |
| 2 | GO:0042719: mitochondrial intermembrane space protein transporter complex | 0.00E+00 |
| 3 | GO:0005730: nucleolus | 1.88E-46 |
| 4 | GO:0005840: ribosome | 2.94E-16 |
| 5 | GO:0022626: cytosolic ribosome | 5.74E-15 |
| 6 | GO:0022625: cytosolic large ribosomal subunit | 1.09E-14 |
| 7 | GO:0032040: small-subunit processome | 4.35E-14 |
| 8 | GO:0022627: cytosolic small ribosomal subunit | 2.75E-11 |
| 9 | GO:0005829: cytosol | 4.50E-07 |
| 10 | GO:0080008: Cul4-RING E3 ubiquitin ligase complex | 9.31E-07 |
| 11 | GO:0030687: preribosome, large subunit precursor | 1.12E-06 |
| 12 | GO:0005834: heterotrimeric G-protein complex | 8.62E-06 |
| 13 | GO:0009506: plasmodesma | 2.09E-05 |
| 14 | GO:0015934: large ribosomal subunit | 2.37E-05 |
| 15 | GO:0005759: mitochondrial matrix | 3.44E-05 |
| 16 | GO:0015935: small ribosomal subunit | 3.94E-05 |
| 17 | GO:0031428: box C/D snoRNP complex | 4.99E-05 |
| 18 | GO:0034388: Pwp2p-containing subcomplex of 90S preribosome | 1.62E-04 |
| 19 | GO:0030686: 90S preribosome | 1.62E-04 |
| 20 | GO:0005736: DNA-directed RNA polymerase I complex | 1.84E-04 |
| 21 | GO:0005666: DNA-directed RNA polymerase III complex | 2.20E-04 |
| 22 | GO:0015030: Cajal body | 2.20E-04 |
| 23 | GO:0070545: PeBoW complex | 3.69E-04 |
| 24 | GO:0005634: nucleus | 5.41E-04 |
| 25 | GO:0005758: mitochondrial intermembrane space | 6.16E-04 |
| 26 | GO:0031429: box H/ACA snoRNP complex | 8.63E-04 |
| 27 | GO:0030529: intracellular ribonucleoprotein complex | 2.10E-03 |
| 28 | GO:0016363: nuclear matrix | 2.14E-03 |
| 29 | GO:0034399: nuclear periphery | 2.91E-03 |
| 30 | GO:0005773: vacuole | 3.07E-03 |
| 31 | GO:0005742: mitochondrial outer membrane translocase complex | 3.33E-03 |
| 32 | GO:0005763: mitochondrial small ribosomal subunit | 3.77E-03 |
| 33 | GO:0005618: cell wall | 4.60E-03 |
| 34 | GO:0000418: DNA-directed RNA polymerase IV complex | 4.69E-03 |
| 35 | GO:0005665: DNA-directed RNA polymerase II, core complex | 5.69E-03 |
| 36 | GO:0005737: cytoplasm | 6.10E-03 |
| 37 | GO:0019013: viral nucleocapsid | 6.22E-03 |
| 38 | GO:0005747: mitochondrial respiratory chain complex I | 7.31E-03 |
| 39 | GO:0000419: DNA-directed RNA polymerase V complex | 7.90E-03 |
| 40 | GO:0005774: vacuolar membrane | 1.03E-02 |
| 41 | GO:0005654: nucleoplasm | 1.04E-02 |
| 42 | GO:0016592: mediator complex | 1.67E-02 |
| 43 | GO:0019005: SCF ubiquitin ligase complex | 2.51E-02 |
| 44 | GO:0005743: mitochondrial inner membrane | 3.89E-02 |
| 45 | GO:0005739: mitochondrion | 4.00E-02 |