GO Enrichment Analysis of Co-expressed Genes with
AT4G30620
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0090071: negative regulation of ribosome biogenesis | 0.00E+00 |
| 2 | GO:0007037: vacuolar phosphate transport | 0.00E+00 |
| 3 | GO:0051246: regulation of protein metabolic process | 0.00E+00 |
| 4 | GO:0018316: peptide cross-linking via L-cystine | 0.00E+00 |
| 5 | GO:0010190: cytochrome b6f complex assembly | 3.50E-07 |
| 6 | GO:0080005: photosystem stoichiometry adjustment | 1.19E-06 |
| 7 | GO:0016123: xanthophyll biosynthetic process | 3.14E-05 |
| 8 | GO:0009658: chloroplast organization | 9.86E-05 |
| 9 | GO:0032544: plastid translation | 1.42E-04 |
| 10 | GO:0034970: histone H3-R2 methylation | 1.56E-04 |
| 11 | GO:0034972: histone H3-R26 methylation | 1.56E-04 |
| 12 | GO:0010322: regulation of isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway | 1.56E-04 |
| 13 | GO:0071806: protein transmembrane transport | 1.56E-04 |
| 14 | GO:0034971: histone H3-R17 methylation | 1.56E-04 |
| 15 | GO:0042371: vitamin K biosynthetic process | 1.56E-04 |
| 16 | GO:0071454: cellular response to anoxia | 1.56E-04 |
| 17 | GO:0043686: co-translational protein modification | 1.56E-04 |
| 18 | GO:0071461: cellular response to redox state | 1.56E-04 |
| 19 | GO:0045037: protein import into chloroplast stroma | 3.29E-04 |
| 20 | GO:0010275: NAD(P)H dehydrogenase complex assembly | 3.55E-04 |
| 21 | GO:0034755: iron ion transmembrane transport | 3.55E-04 |
| 22 | GO:1905011: transmembrane phosphate ion transport from cytosol to vacuole | 3.55E-04 |
| 23 | GO:0080064: 4,4-dimethyl-9beta,19-cyclopropylsterol oxidation | 3.55E-04 |
| 24 | GO:0048209: regulation of vesicle targeting, to, from or within Golgi | 3.55E-04 |
| 25 | GO:0019919: peptidyl-arginine methylation, to asymmetrical-dimethyl arginine | 3.55E-04 |
| 26 | GO:0080153: negative regulation of reductive pentose-phosphate cycle | 3.55E-04 |
| 27 | GO:0000394: RNA splicing, via endonucleolytic cleavage and ligation | 5.82E-04 |
| 28 | GO:0006013: mannose metabolic process | 5.82E-04 |
| 29 | GO:0009150: purine ribonucleotide metabolic process | 5.82E-04 |
| 30 | GO:0051604: protein maturation | 5.82E-04 |
| 31 | GO:0006696: ergosterol biosynthetic process | 5.82E-04 |
| 32 | GO:0090307: mitotic spindle assembly | 8.33E-04 |
| 33 | GO:0006809: nitric oxide biosynthetic process | 8.33E-04 |
| 34 | GO:0051415: interphase microtubule nucleation by interphase microtubule organizing center | 8.33E-04 |
| 35 | GO:0033014: tetrapyrrole biosynthetic process | 8.33E-04 |
| 36 | GO:2001141: regulation of RNA biosynthetic process | 8.33E-04 |
| 37 | GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly | 8.33E-04 |
| 38 | GO:0016117: carotenoid biosynthetic process | 9.79E-04 |
| 39 | GO:0042274: ribosomal small subunit biogenesis | 1.10E-03 |
| 40 | GO:0031935: regulation of chromatin silencing | 1.10E-03 |
| 41 | GO:0009765: photosynthesis, light harvesting | 1.10E-03 |
| 42 | GO:0031122: cytoplasmic microtubule organization | 1.10E-03 |
| 43 | GO:1900864: mitochondrial RNA modification | 1.10E-03 |
| 44 | GO:0016120: carotene biosynthetic process | 1.40E-03 |
| 45 | GO:0045038: protein import into chloroplast thylakoid membrane | 1.40E-03 |
| 46 | GO:0031365: N-terminal protein amino acid modification | 1.40E-03 |
| 47 | GO:0031053: primary miRNA processing | 1.72E-03 |
| 48 | GO:0016070: RNA metabolic process | 1.72E-03 |
| 49 | GO:0010027: thylakoid membrane organization | 1.99E-03 |
| 50 | GO:0017148: negative regulation of translation | 2.06E-03 |
| 51 | GO:0010019: chloroplast-nucleus signaling pathway | 2.06E-03 |
| 52 | GO:1900056: negative regulation of leaf senescence | 2.42E-03 |
| 53 | GO:0080111: DNA demethylation | 2.42E-03 |
| 54 | GO:0048564: photosystem I assembly | 2.80E-03 |
| 55 | GO:0045292: mRNA cis splicing, via spliceosome | 2.80E-03 |
| 56 | GO:0042255: ribosome assembly | 2.80E-03 |
| 57 | GO:0006353: DNA-templated transcription, termination | 2.80E-03 |
| 58 | GO:0030091: protein repair | 2.80E-03 |
| 59 | GO:0006605: protein targeting | 2.80E-03 |
| 60 | GO:0009704: de-etiolation | 2.80E-03 |
| 61 | GO:0007568: aging | 2.99E-03 |
| 62 | GO:0071482: cellular response to light stimulus | 3.21E-03 |
| 63 | GO:0022900: electron transport chain | 3.21E-03 |
| 64 | GO:0009657: plastid organization | 3.21E-03 |
| 65 | GO:0009245: lipid A biosynthetic process | 3.63E-03 |
| 66 | GO:0006783: heme biosynthetic process | 3.63E-03 |
| 67 | GO:0006779: porphyrin-containing compound biosynthetic process | 4.06E-03 |
| 68 | GO:0010380: regulation of chlorophyll biosynthetic process | 4.06E-03 |
| 69 | GO:0045036: protein targeting to chloroplast | 4.52E-03 |
| 70 | GO:0043085: positive regulation of catalytic activity | 4.99E-03 |
| 71 | GO:0006879: cellular iron ion homeostasis | 4.99E-03 |
| 72 | GO:0006352: DNA-templated transcription, initiation | 4.99E-03 |
| 73 | GO:0006790: sulfur compound metabolic process | 5.48E-03 |
| 74 | GO:0009767: photosynthetic electron transport chain | 5.98E-03 |
| 75 | GO:0034605: cellular response to heat | 6.50E-03 |
| 76 | GO:0019253: reductive pentose-phosphate cycle | 6.50E-03 |
| 77 | GO:0010207: photosystem II assembly | 6.50E-03 |
| 78 | GO:0090351: seedling development | 7.04E-03 |
| 79 | GO:0006289: nucleotide-excision repair | 8.16E-03 |
| 80 | GO:0007017: microtubule-based process | 8.74E-03 |
| 81 | GO:0016226: iron-sulfur cluster assembly | 9.96E-03 |
| 82 | GO:0070417: cellular response to cold | 1.19E-02 |
| 83 | GO:0008033: tRNA processing | 1.25E-02 |
| 84 | GO:0009791: post-embryonic development | 1.46E-02 |
| 85 | GO:0010228: vegetative to reproductive phase transition of meristem | 1.46E-02 |
| 86 | GO:0080156: mitochondrial mRNA modification | 1.54E-02 |
| 87 | GO:0010193: response to ozone | 1.54E-02 |
| 88 | GO:0006891: intra-Golgi vesicle-mediated transport | 1.54E-02 |
| 89 | GO:0032502: developmental process | 1.61E-02 |
| 90 | GO:0030163: protein catabolic process | 1.68E-02 |
| 91 | GO:0006464: cellular protein modification process | 1.76E-02 |
| 92 | GO:0016126: sterol biosynthetic process | 1.99E-02 |
| 93 | GO:0009816: defense response to bacterium, incompatible interaction | 2.07E-02 |
| 94 | GO:0006906: vesicle fusion | 2.16E-02 |
| 95 | GO:0015995: chlorophyll biosynthetic process | 2.24E-02 |
| 96 | GO:0006888: ER to Golgi vesicle-mediated transport | 2.24E-02 |
| 97 | GO:0006950: response to stress | 2.24E-02 |
| 98 | GO:0006811: ion transport | 2.58E-02 |
| 99 | GO:0009910: negative regulation of flower development | 2.67E-02 |
| 100 | GO:0009744: response to sucrose | 3.42E-02 |
| 101 | GO:0009644: response to high light intensity | 3.61E-02 |
| 102 | GO:0032259: methylation | 3.79E-02 |
| 103 | GO:0006260: DNA replication | 3.91E-02 |
| 104 | GO:0009793: embryo development ending in seed dormancy | 4.11E-02 |
| 105 | GO:0006364: rRNA processing | 4.22E-02 |
| 106 | GO:0006417: regulation of translation | 4.54E-02 |
| 107 | GO:0009909: regulation of flower development | 4.54E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0045435: lycopene epsilon cyclase activity | 0.00E+00 |
| 2 | GO:0046905: phytoene synthase activity | 0.00E+00 |
| 3 | GO:0008935: 1,4-dihydroxy-2-naphthoyl-CoA synthase activity | 0.00E+00 |
| 4 | GO:0016767: geranylgeranyl-diphosphate geranylgeranyltransferase activity | 0.00E+00 |
| 5 | GO:0046906: tetrapyrrole binding | 1.56E-04 |
| 6 | GO:0004719: protein-L-isoaspartate (D-aspartate) O-methyltransferase activity | 1.56E-04 |
| 7 | GO:0004325: ferrochelatase activity | 1.56E-04 |
| 8 | GO:0042586: peptide deformylase activity | 1.56E-04 |
| 9 | GO:0051996: squalene synthase activity | 1.56E-04 |
| 10 | GO:0030941: chloroplast targeting sequence binding | 1.56E-04 |
| 11 | GO:0035241: protein-arginine omega-N monomethyltransferase activity | 3.55E-04 |
| 12 | GO:0004310: farnesyl-diphosphate farnesyltransferase activity | 3.55E-04 |
| 13 | GO:0016277: [myelin basic protein]-arginine N-methyltransferase activity | 3.55E-04 |
| 14 | GO:0035242: protein-arginine omega-N asymmetric methyltransferase activity | 3.55E-04 |
| 15 | GO:0032947: protein complex scaffold | 5.82E-04 |
| 16 | GO:0004848: ureidoglycolate hydrolase activity | 5.82E-04 |
| 17 | GO:0008469: histone-arginine N-methyltransferase activity | 5.82E-04 |
| 18 | GO:0000254: C-4 methylsterol oxidase activity | 8.33E-04 |
| 19 | GO:0016851: magnesium chelatase activity | 8.33E-04 |
| 20 | GO:0000339: RNA cap binding | 8.33E-04 |
| 21 | GO:0047627: adenylylsulfatase activity | 8.33E-04 |
| 22 | GO:0043023: ribosomal large subunit binding | 8.33E-04 |
| 23 | GO:0051861: glycolipid binding | 1.10E-03 |
| 24 | GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor | 1.10E-03 |
| 25 | GO:0016987: sigma factor activity | 1.10E-03 |
| 26 | GO:0043015: gamma-tubulin binding | 1.10E-03 |
| 27 | GO:0001053: plastid sigma factor activity | 1.10E-03 |
| 28 | GO:0048038: quinone binding | 1.39E-03 |
| 29 | GO:0051011: microtubule minus-end binding | 1.40E-03 |
| 30 | GO:0016773: phosphotransferase activity, alcohol group as acceptor | 1.40E-03 |
| 31 | GO:0031177: phosphopantetheine binding | 1.72E-03 |
| 32 | GO:0015631: tubulin binding | 2.06E-03 |
| 33 | GO:0000035: acyl binding | 2.06E-03 |
| 34 | GO:0004559: alpha-mannosidase activity | 2.06E-03 |
| 35 | GO:0019899: enzyme binding | 2.42E-03 |
| 36 | GO:0000036: ACP phosphopantetheine attachment site binding involved in fatty acid biosynthetic process | 2.80E-03 |
| 37 | GO:0071949: FAD binding | 3.63E-03 |
| 38 | GO:0008168: methyltransferase activity | 3.74E-03 |
| 39 | GO:0005381: iron ion transmembrane transporter activity | 4.06E-03 |
| 40 | GO:0008233: peptidase activity | 5.04E-03 |
| 41 | GO:0016491: oxidoreductase activity | 5.09E-03 |
| 42 | GO:0003690: double-stranded DNA binding | 5.86E-03 |
| 43 | GO:0009982: pseudouridine synthase activity | 5.98E-03 |
| 44 | GO:0031072: heat shock protein binding | 5.98E-03 |
| 45 | GO:0003723: RNA binding | 6.65E-03 |
| 46 | GO:0003887: DNA-directed DNA polymerase activity | 7.59E-03 |
| 47 | GO:0051536: iron-sulfur cluster binding | 8.16E-03 |
| 48 | GO:0019843: rRNA binding | 1.01E-02 |
| 49 | GO:0003727: single-stranded RNA binding | 1.12E-02 |
| 50 | GO:0005506: iron ion binding | 1.16E-02 |
| 51 | GO:0008565: protein transporter activity | 1.21E-02 |
| 52 | GO:0008080: N-acetyltransferase activity | 1.32E-02 |
| 53 | GO:0004518: nuclease activity | 1.61E-02 |
| 54 | GO:0005200: structural constituent of cytoskeleton | 1.84E-02 |
| 55 | GO:0008236: serine-type peptidase activity | 2.32E-02 |
| 56 | GO:0050897: cobalt ion binding | 2.67E-02 |
| 57 | GO:0005515: protein binding | 2.99E-02 |
| 58 | GO:0000149: SNARE binding | 3.04E-02 |
| 59 | GO:0005484: SNAP receptor activity | 3.42E-02 |
| 60 | GO:0051537: 2 iron, 2 sulfur cluster binding | 3.61E-02 |
| 61 | GO:0016787: hydrolase activity | 3.68E-02 |
| 62 | GO:0005198: structural molecule activity | 3.71E-02 |
| 63 | GO:0003924: GTPase activity | 3.96E-02 |
| 64 | GO:0003899: DNA-directed 5'-3' RNA polymerase activity | 4.22E-02 |
| 65 | GO:0003777: microtubule motor activity | 4.54E-02 |
| 66 | GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups | 4.86E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0009507: chloroplast | 1.44E-29 |
| 2 | GO:0009535: chloroplast thylakoid membrane | 1.06E-13 |
| 3 | GO:0055035: plastid thylakoid membrane | 3.14E-05 |
| 4 | GO:0009570: chloroplast stroma | 4.33E-05 |
| 5 | GO:0031969: chloroplast membrane | 1.54E-04 |
| 6 | GO:0005845: mRNA cap binding complex | 1.56E-04 |
| 7 | GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone) | 1.73E-04 |
| 8 | GO:0008274: gamma-tubulin ring complex | 3.55E-04 |
| 9 | GO:0005846: nuclear cap binding complex | 3.55E-04 |
| 10 | GO:0080085: signal recognition particle, chloroplast targeting | 3.55E-04 |
| 11 | GO:0009528: plastid inner membrane | 5.82E-04 |
| 12 | GO:0005797: Golgi medial cisterna | 5.82E-04 |
| 13 | GO:0042651: thylakoid membrane | 6.43E-04 |
| 14 | GO:0009941: chloroplast envelope | 6.67E-04 |
| 15 | GO:0000923: equatorial microtubule organizing center | 8.33E-04 |
| 16 | GO:0009526: plastid envelope | 1.10E-03 |
| 17 | GO:0030286: dynein complex | 1.10E-03 |
| 18 | GO:0009536: plastid | 1.20E-03 |
| 19 | GO:0005623: cell | 1.55E-03 |
| 20 | GO:0005801: cis-Golgi network | 2.06E-03 |
| 21 | GO:0009840: chloroplastic endopeptidase Clp complex | 2.06E-03 |
| 22 | GO:0000123: histone acetyltransferase complex | 2.42E-03 |
| 23 | GO:0031359: integral component of chloroplast outer membrane | 2.42E-03 |
| 24 | GO:0009707: chloroplast outer membrane | 2.59E-03 |
| 25 | GO:0005786: signal recognition particle, endoplasmic reticulum targeting | 3.21E-03 |
| 26 | GO:0046930: pore complex | 3.21E-03 |
| 27 | GO:0000922: spindle pole | 3.63E-03 |
| 28 | GO:0009508: plastid chromosome | 5.98E-03 |
| 29 | GO:0043234: protein complex | 7.59E-03 |
| 30 | GO:0005875: microtubule associated complex | 7.59E-03 |
| 31 | GO:0009706: chloroplast inner membrane | 8.06E-03 |
| 32 | GO:0009295: nucleoid | 1.84E-02 |
| 33 | GO:0009534: chloroplast thylakoid | 2.22E-02 |
| 34 | GO:0031201: SNARE complex | 3.22E-02 |
| 35 | GO:0005622: intracellular | 3.59E-02 |
| 36 | GO:0031966: mitochondrial membrane | 4.01E-02 |
| 37 | GO:0005840: ribosome | 4.47E-02 |