GO Enrichment Analysis of Co-expressed Genes with
AT4G30580
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0006399: tRNA metabolic process | 0.00E+00 |
| 2 | GO:0051484: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway involved in terpenoid biosynthetic process | 0.00E+00 |
| 3 | GO:0071482: cellular response to light stimulus | 2.60E-05 |
| 4 | GO:1904966: positive regulation of vitamin E biosynthetic process | 5.18E-05 |
| 5 | GO:1904964: positive regulation of phytol biosynthetic process | 5.18E-05 |
| 6 | GO:0006436: tryptophanyl-tRNA aminoacylation | 5.18E-05 |
| 7 | GO:0006419: alanyl-tRNA aminoacylation | 5.18E-05 |
| 8 | GO:0019646: aerobic electron transport chain | 5.18E-05 |
| 9 | GO:0031426: polycistronic mRNA processing | 5.18E-05 |
| 10 | GO:0010275: NAD(P)H dehydrogenase complex assembly | 1.27E-04 |
| 11 | GO:1902326: positive regulation of chlorophyll biosynthetic process | 1.27E-04 |
| 12 | GO:0034755: iron ion transmembrane transport | 1.27E-04 |
| 13 | GO:0071457: cellular response to ozone | 1.27E-04 |
| 14 | GO:0080005: photosystem stoichiometry adjustment | 1.27E-04 |
| 15 | GO:0051604: protein maturation | 2.17E-04 |
| 16 | GO:0006013: mannose metabolic process | 2.17E-04 |
| 17 | GO:0006986: response to unfolded protein | 3.17E-04 |
| 18 | GO:2001141: regulation of RNA biosynthetic process | 3.17E-04 |
| 19 | GO:0071484: cellular response to light intensity | 3.17E-04 |
| 20 | GO:0051085: chaperone mediated protein folding requiring cofactor | 3.17E-04 |
| 21 | GO:0010239: chloroplast mRNA processing | 3.17E-04 |
| 22 | GO:0009052: pentose-phosphate shunt, non-oxidative branch | 3.17E-04 |
| 23 | GO:0071486: cellular response to high light intensity | 4.24E-04 |
| 24 | GO:0006021: inositol biosynthetic process | 4.24E-04 |
| 25 | GO:0031365: N-terminal protein amino acid modification | 5.39E-04 |
| 26 | GO:0071493: cellular response to UV-B | 5.39E-04 |
| 27 | GO:0042549: photosystem II stabilization | 6.60E-04 |
| 28 | GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway | 6.60E-04 |
| 29 | GO:0046855: inositol phosphate dephosphorylation | 6.60E-04 |
| 30 | GO:0006655: phosphatidylglycerol biosynthetic process | 6.60E-04 |
| 31 | GO:0010190: cytochrome b6f complex assembly | 6.60E-04 |
| 32 | GO:0042372: phylloquinone biosynthetic process | 7.87E-04 |
| 33 | GO:0006400: tRNA modification | 9.18E-04 |
| 34 | GO:0048564: photosystem I assembly | 1.06E-03 |
| 35 | GO:0017004: cytochrome complex assembly | 1.20E-03 |
| 36 | GO:0009657: plastid organization | 1.20E-03 |
| 37 | GO:0019430: removal of superoxide radicals | 1.20E-03 |
| 38 | GO:0048507: meristem development | 1.35E-03 |
| 39 | GO:0006879: cellular iron ion homeostasis | 1.84E-03 |
| 40 | GO:0006352: DNA-templated transcription, initiation | 1.84E-03 |
| 41 | GO:0006415: translational termination | 1.84E-03 |
| 42 | GO:0006790: sulfur compound metabolic process | 2.01E-03 |
| 43 | GO:0016024: CDP-diacylglycerol biosynthetic process | 2.01E-03 |
| 44 | GO:0009767: photosynthetic electron transport chain | 2.19E-03 |
| 45 | GO:0010207: photosystem II assembly | 2.38E-03 |
| 46 | GO:0046854: phosphatidylinositol phosphorylation | 2.56E-03 |
| 47 | GO:0019853: L-ascorbic acid biosynthetic process | 2.56E-03 |
| 48 | GO:0006825: copper ion transport | 3.16E-03 |
| 49 | GO:0008299: isoprenoid biosynthetic process | 3.16E-03 |
| 50 | GO:0006418: tRNA aminoacylation for protein translation | 3.16E-03 |
| 51 | GO:0007017: microtubule-based process | 3.16E-03 |
| 52 | GO:0010468: regulation of gene expression | 3.79E-03 |
| 53 | GO:0000413: protein peptidyl-prolyl isomerization | 4.49E-03 |
| 54 | GO:0071472: cellular response to salt stress | 4.72E-03 |
| 55 | GO:0008654: phospholipid biosynthetic process | 5.21E-03 |
| 56 | GO:0009791: post-embryonic development | 5.21E-03 |
| 57 | GO:0010193: response to ozone | 5.46E-03 |
| 58 | GO:0010027: thylakoid membrane organization | 7.04E-03 |
| 59 | GO:0042128: nitrate assimilation | 7.59E-03 |
| 60 | GO:0018298: protein-chromophore linkage | 8.46E-03 |
| 61 | GO:0048481: plant ovule development | 8.46E-03 |
| 62 | GO:0009637: response to blue light | 9.99E-03 |
| 63 | GO:0010114: response to red light | 1.19E-02 |
| 64 | GO:0006364: rRNA processing | 1.47E-02 |
| 65 | GO:0010224: response to UV-B | 1.51E-02 |
| 66 | GO:0009793: embryo development ending in seed dormancy | 1.88E-02 |
| 67 | GO:0006396: RNA processing | 1.93E-02 |
| 68 | GO:0055085: transmembrane transport | 2.03E-02 |
| 69 | GO:0006457: protein folding | 2.07E-02 |
| 70 | GO:0006413: translational initiation | 2.66E-02 |
| 71 | GO:0006508: proteolysis | 2.68E-02 |
| 72 | GO:0009451: RNA modification | 2.84E-02 |
| 73 | GO:0009658: chloroplast organization | 3.81E-02 |
| 74 | GO:0042254: ribosome biogenesis | 3.86E-02 |
| 75 | GO:0080167: response to karrikin | 4.44E-02 |
| 76 | GO:0046777: protein autophosphorylation | 4.66E-02 |
| 77 | GO:0015979: photosynthesis | 4.88E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0008942: nitrite reductase [NAD(P)H] activity | 0.00E+00 |
| 2 | GO:0030604: 1-deoxy-D-xylulose-5-phosphate reductoisomerase activity | 0.00E+00 |
| 3 | GO:0019144: ADP-sugar diphosphatase activity | 0.00E+00 |
| 4 | GO:0004830: tryptophan-tRNA ligase activity | 5.18E-05 |
| 5 | GO:0010347: L-galactose-1-phosphate phosphatase activity | 5.18E-05 |
| 6 | GO:0080042: ADP-glucose pyrophosphohydrolase activity | 5.18E-05 |
| 7 | GO:0004813: alanine-tRNA ligase activity | 5.18E-05 |
| 8 | GO:0004008: copper-exporting ATPase activity | 5.18E-05 |
| 9 | GO:0003755: peptidyl-prolyl cis-trans isomerase activity | 8.20E-05 |
| 10 | GO:0080041: ADP-ribose pyrophosphohydrolase activity | 1.27E-04 |
| 11 | GO:0052832: inositol monophosphate 3-phosphatase activity | 1.27E-04 |
| 12 | GO:0008934: inositol monophosphate 1-phosphatase activity | 1.27E-04 |
| 13 | GO:0052833: inositol monophosphate 4-phosphatase activity | 1.27E-04 |
| 14 | GO:0005528: FK506 binding | 1.30E-04 |
| 15 | GO:0004751: ribose-5-phosphate isomerase activity | 2.17E-04 |
| 16 | GO:0070402: NADPH binding | 2.17E-04 |
| 17 | GO:0004148: dihydrolipoyl dehydrogenase activity | 2.17E-04 |
| 18 | GO:0003955: NAD(P)H dehydrogenase (quinone) activity | 2.17E-04 |
| 19 | GO:0048027: mRNA 5'-UTR binding | 3.17E-04 |
| 20 | GO:0016149: translation release factor activity, codon specific | 3.17E-04 |
| 21 | GO:0001053: plastid sigma factor activity | 4.24E-04 |
| 22 | GO:0016987: sigma factor activity | 4.24E-04 |
| 23 | GO:0043495: protein anchor | 4.24E-04 |
| 24 | GO:0004605: phosphatidate cytidylyltransferase activity | 6.60E-04 |
| 25 | GO:0004784: superoxide dismutase activity | 6.60E-04 |
| 26 | GO:0004559: alpha-mannosidase activity | 7.87E-04 |
| 27 | GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity | 7.87E-04 |
| 28 | GO:0008235: metalloexopeptidase activity | 9.18E-04 |
| 29 | GO:0019899: enzyme binding | 9.18E-04 |
| 30 | GO:0043022: ribosome binding | 1.06E-03 |
| 31 | GO:0005375: copper ion transmembrane transporter activity | 1.20E-03 |
| 32 | GO:0003747: translation release factor activity | 1.35E-03 |
| 33 | GO:0005381: iron ion transmembrane transporter activity | 1.50E-03 |
| 34 | GO:0004177: aminopeptidase activity | 1.84E-03 |
| 35 | GO:0000049: tRNA binding | 2.01E-03 |
| 36 | GO:0015662: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism | 2.19E-03 |
| 37 | GO:0003954: NADH dehydrogenase activity | 2.96E-03 |
| 38 | GO:0051087: chaperone binding | 3.16E-03 |
| 39 | GO:0043424: protein histidine kinase binding | 3.16E-03 |
| 40 | GO:0004176: ATP-dependent peptidase activity | 3.37E-03 |
| 41 | GO:0022891: substrate-specific transmembrane transporter activity | 3.80E-03 |
| 42 | GO:0004812: aminoacyl-tRNA ligase activity | 4.26E-03 |
| 43 | GO:0008080: N-acetyltransferase activity | 4.72E-03 |
| 44 | GO:0016853: isomerase activity | 4.96E-03 |
| 45 | GO:0008233: peptidase activity | 5.98E-03 |
| 46 | GO:0016597: amino acid binding | 6.76E-03 |
| 47 | GO:0046872: metal ion binding | 6.85E-03 |
| 48 | GO:0016168: chlorophyll binding | 7.31E-03 |
| 49 | GO:0008236: serine-type peptidase activity | 8.17E-03 |
| 50 | GO:0030145: manganese ion binding | 9.36E-03 |
| 51 | GO:0050897: cobalt ion binding | 9.36E-03 |
| 52 | GO:0051537: 2 iron, 2 sulfur cluster binding | 1.26E-02 |
| 53 | GO:0003899: DNA-directed 5'-3' RNA polymerase activity | 1.47E-02 |
| 54 | GO:0003777: microtubule motor activity | 1.58E-02 |
| 55 | GO:0051082: unfolded protein binding | 1.89E-02 |
| 56 | GO:0005507: copper ion binding | 2.28E-02 |
| 57 | GO:0003743: translation initiation factor activity | 3.12E-02 |
| 58 | GO:0042626: ATPase activity, coupled to transmembrane movement of substances | 3.31E-02 |
| 59 | GO:0042802: identical protein binding | 3.31E-02 |
| 60 | GO:0016788: hydrolase activity, acting on ester bonds | 3.86E-02 |
| 61 | GO:0050660: flavin adenine dinucleotide binding | 4.23E-02 |
| 62 | GO:0052689: carboxylic ester hydrolase activity | 4.77E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0009507: chloroplast | 1.17E-25 |
| 2 | GO:0009535: chloroplast thylakoid membrane | 1.89E-12 |
| 3 | GO:0009543: chloroplast thylakoid lumen | 1.27E-05 |
| 4 | GO:0009570: chloroplast stroma | 9.42E-05 |
| 5 | GO:0031304: intrinsic component of mitochondrial inner membrane | 1.27E-04 |
| 6 | GO:0009523: photosystem II | 3.13E-04 |
| 7 | GO:0030286: dynein complex | 4.24E-04 |
| 8 | GO:0009526: plastid envelope | 4.24E-04 |
| 9 | GO:0055035: plastid thylakoid membrane | 5.39E-04 |
| 10 | GO:0009534: chloroplast thylakoid | 5.69E-04 |
| 11 | GO:0009941: chloroplast envelope | 8.64E-04 |
| 12 | GO:0009533: chloroplast stromal thylakoid | 9.18E-04 |
| 13 | GO:0042644: chloroplast nucleoid | 1.35E-03 |
| 14 | GO:0009508: plastid chromosome | 2.19E-03 |
| 15 | GO:0030095: chloroplast photosystem II | 2.38E-03 |
| 16 | GO:0005875: microtubule associated complex | 2.76E-03 |
| 17 | GO:0005759: mitochondrial matrix | 2.90E-03 |
| 18 | GO:0042651: thylakoid membrane | 3.16E-03 |
| 19 | GO:0009295: nucleoid | 6.49E-03 |
| 20 | GO:0031977: thylakoid lumen | 1.13E-02 |
| 21 | GO:0005747: mitochondrial respiratory chain complex I | 1.70E-02 |
| 22 | GO:0010287: plastoglobule | 2.14E-02 |
| 23 | GO:0009505: plant-type cell wall | 4.05E-02 |
| 24 | GO:0080008: Cul4-RING E3 ubiquitin ligase complex | 4.07E-02 |
| 25 | GO:0031969: chloroplast membrane | 4.44E-02 |