co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT4G30500

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0019307: mannose biosynthetic process	0.00E+00
2	GO:0006489: dolichyl diphosphate biosynthetic process	0.00E+00
3	GO:0009264: deoxyribonucleotide catabolic process	0.00E+00
4	GO:0045047: protein targeting to ER	0.00E+00
5	GO:0030970: retrograde protein transport, ER to cytosol	0.00E+00
6	GO:0006511: ubiquitin-dependent protein catabolic process	1.77E-31
7	GO:0051603: proteolysis involved in cellular protein catabolic process	1.70E-11
8	GO:0034976: response to endoplasmic reticulum stress	1.20E-09
9	GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process	3.14E-08
10	GO:0030433: ubiquitin-dependent ERAD pathway	3.36E-07
11	GO:0030163: protein catabolic process	1.88E-06
12	GO:0045454: cell redox homeostasis	6.90E-06
13	GO:0006457: protein folding	1.30E-05
14	GO:0045899: positive regulation of RNA polymerase II transcriptional preinitiation complex assembly	2.64E-05
15	GO:0043248: proteasome assembly	2.64E-05
16	GO:0046686: response to cadmium ion	2.70E-05
17	GO:0042964: thioredoxin reduction	1.10E-04
18	GO:0010043: response to zinc ion	1.68E-04
19	GO:0006626: protein targeting to mitochondrion	2.30E-04
20	GO:0015786: UDP-glucose transport	2.57E-04
21	GO:0009156: ribonucleoside monophosphate biosynthetic process	2.57E-04
22	GO:0006123: mitochondrial electron transport, cytochrome c to oxygen	2.57E-04
23	GO:0051788: response to misfolded protein	2.57E-04
24	GO:0006487: protein N-linked glycosylation	3.65E-04
25	GO:0015783: GDP-fucose transport	4.25E-04
26	GO:0006013: mannose metabolic process	4.25E-04
27	GO:0055074: calcium ion homeostasis	4.25E-04
28	GO:0015992: proton transport	4.43E-04
29	GO:0009647: skotomorphogenesis	6.10E-04
30	GO:0001676: long-chain fatty acid metabolic process	6.10E-04
31	GO:0046836: glycolipid transport	6.10E-04
32	GO:0009298: GDP-mannose biosynthetic process	6.10E-04
33	GO:0072334: UDP-galactose transmembrane transport	6.10E-04
34	GO:0009165: nucleotide biosynthetic process	8.10E-04
35	GO:0010363: regulation of plant-type hypersensitive response	8.10E-04
36	GO:0009651: response to salt stress	9.69E-04
37	GO:0097428: protein maturation by iron-sulfur cluster transfer	1.02E-03
38	GO:0007029: endoplasmic reticulum organization	1.02E-03
39	GO:0036065: fucosylation	1.02E-03
40	GO:0045040: protein import into mitochondrial outer membrane	1.25E-03
41	GO:0042176: regulation of protein catabolic process	1.25E-03
42	GO:0009554: megasporogenesis	1.49E-03
43	GO:0016049: cell growth	1.54E-03
44	GO:0009793: embryo development ending in seed dormancy	1.60E-03
45	GO:0006122: mitochondrial electron transport, ubiquinol to cytochrome c	1.75E-03
46	GO:0048528: post-embryonic root development	1.75E-03
47	GO:0006744: ubiquinone biosynthetic process	1.75E-03
48	GO:0006605: protein targeting	2.03E-03
49	GO:0031540: regulation of anthocyanin biosynthetic process	2.03E-03
50	GO:0018401: peptidyl-proline hydroxylation to 4-hydroxy-L-proline	2.03E-03
51	GO:0019430: removal of superoxide radicals	2.32E-03
52	GO:0030968: endoplasmic reticulum unfolded protein response	2.32E-03
53	GO:0008283: cell proliferation	2.61E-03
54	GO:0098656: anion transmembrane transport	2.62E-03
55	GO:0046685: response to arsenic-containing substance	2.62E-03
56	GO:0010449: root meristem growth	2.93E-03
57	GO:0043067: regulation of programmed cell death	2.93E-03
58	GO:0016192: vesicle-mediated transport	2.98E-03
59	GO:0048229: gametophyte development	3.59E-03
60	GO:0006378: mRNA polyadenylation	3.59E-03
61	GO:0006820: anion transport	3.93E-03
62	GO:0048316: seed development	4.28E-03
63	GO:0009553: embryo sac development	4.83E-03
64	GO:0019853: L-ascorbic acid biosynthetic process	5.04E-03
65	GO:0009969: xyloglucan biosynthetic process	5.04E-03
66	GO:0006406: mRNA export from nucleus	5.84E-03
67	GO:0009116: nucleoside metabolic process	5.84E-03
68	GO:0008299: isoprenoid biosynthetic process	6.25E-03
69	GO:0061077: chaperone-mediated protein folding	6.67E-03
70	GO:0007005: mitochondrion organization	7.11E-03
71	GO:0009790: embryo development	7.27E-03
72	GO:0015031: protein transport	8.18E-03
73	GO:0009735: response to cytokinin	8.45E-03
74	GO:0051028: mRNA transport	8.46E-03
75	GO:0000413: protein peptidyl-prolyl isomerization	8.93E-03
76	GO:0015991: ATP hydrolysis coupled proton transport	8.93E-03
77	GO:0048868: pollen tube development	9.41E-03
78	GO:0048825: cotyledon development	1.04E-02
79	GO:0009556: microsporogenesis	1.04E-02
80	GO:0010193: response to ozone	1.09E-02
81	GO:0009567: double fertilization forming a zygote and endosperm	1.25E-02
82	GO:0009817: defense response to fungus, incompatible interaction	1.71E-02
83	GO:0009832: plant-type cell wall biogenesis	1.77E-02
84	GO:0006499: N-terminal protein myristoylation	1.83E-02
85	GO:0000724: double-strand break repair via homologous recombination	1.96E-02
86	GO:0045087: innate immune response	2.02E-02
87	GO:0006886: intracellular protein transport	2.05E-02
88	GO:0006631: fatty acid metabolic process	2.29E-02
89	GO:0000209: protein polyubiquitination	2.49E-02
90	GO:0048364: root development	2.55E-02
91	GO:0009965: leaf morphogenesis	2.63E-02
92	GO:0042787: protein ubiquitination involved in ubiquitin-dependent protein catabolic process	2.77E-02
93	GO:0006812: cation transport	2.85E-02
94	GO:0009846: pollen germination	2.85E-02
95	GO:0009736: cytokinin-activated signaling pathway	2.99E-02
96	GO:0006486: protein glycosylation	2.99E-02
97	GO:0009742: brassinosteroid mediated signaling pathway	4.01E-02

Rank	GO Term	Adjusted P value
1	GO:0052873: FMN reductase (NADPH) activity	0.00E+00
2	GO:0008752: FMN reductase activity	0.00E+00
3	GO:0004615: phosphomannomutase activity	0.00E+00
4	GO:0004298: threonine-type endopeptidase activity	1.48E-39
5	GO:0008233: peptidase activity	4.21E-25
6	GO:0003756: protein disulfide isomerase activity	6.34E-09
7	GO:0036402: proteasome-activating ATPase activity	2.64E-05
8	GO:0003975: UDP-N-acetylglucosamine-dolichyl-phosphate N-acetylglucosaminephosphotransferase activity	1.10E-04
9	GO:1990381: ubiquitin-specific protease binding	1.10E-04
10	GO:0008963: phospho-N-acetylmuramoyl-pentapeptide-transferase activity	2.57E-04
11	GO:0050347: trans-octaprenyltranstransferase activity	2.57E-04
12	GO:0052924: all-trans-nonaprenyl-diphosphate synthase (geranylgeranyl-diphosphate specific) activity	2.57E-04
13	GO:0017025: TBP-class protein binding	2.94E-04
14	GO:0003955: NAD(P)H dehydrogenase (quinone) activity	4.25E-04
15	GO:0005457: GDP-fucose transmembrane transporter activity	4.25E-04
16	GO:0008253: 5'-nucleotidase activity	4.25E-04
17	GO:0005460: UDP-glucose transmembrane transporter activity	6.10E-04
18	GO:0017089: glycolipid transporter activity	6.10E-04
19	GO:0004749: ribose phosphate diphosphokinase activity	6.10E-04
20	GO:0016853: isomerase activity	7.69E-04
21	GO:0016004: phospholipase activator activity	8.10E-04
22	GO:1904264: ubiquitin protein ligase activity involved in ERAD pathway	8.10E-04
23	GO:0004659: prenyltransferase activity	8.10E-04
24	GO:0015368: calcium:cation antiporter activity	8.10E-04
25	GO:0051861: glycolipid binding	8.10E-04
26	GO:0015369: calcium:proton antiporter activity	8.10E-04
27	GO:0016820: hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances	8.10E-04
28	GO:0005459: UDP-galactose transmembrane transporter activity	1.02E-03
29	GO:0004656: procollagen-proline 4-dioxygenase activity	1.49E-03
30	GO:0102391: decanoate--CoA ligase activity	1.49E-03
31	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	1.61E-03
32	GO:0008320: protein transmembrane transporter activity	1.75E-03
33	GO:0004467: long-chain fatty acid-CoA ligase activity	1.75E-03
34	GO:0008107: galactoside 2-alpha-L-fucosyltransferase activity	1.75E-03
35	GO:0015491: cation:cation antiporter activity	2.03E-03
36	GO:0015288: porin activity	2.03E-03
37	GO:0008308: voltage-gated anion channel activity	2.32E-03
38	GO:0008417: fucosyltransferase activity	2.62E-03
39	GO:0045309: protein phosphorylated amino acid binding	2.93E-03
40	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	3.04E-03
41	GO:0030234: enzyme regulator activity	3.25E-03
42	GO:0019904: protein domain specific binding	3.59E-03
43	GO:0046961: proton-transporting ATPase activity, rotational mechanism	3.59E-03
44	GO:0004161: dimethylallyltranstransferase activity	3.59E-03
45	GO:0004175: endopeptidase activity	4.66E-03
46	GO:0051082: unfolded protein binding	4.98E-03
47	GO:0031418: L-ascorbic acid binding	5.84E-03
48	GO:0005528: FK506 binding	5.84E-03
49	GO:0004540: ribonuclease activity	6.67E-03
50	GO:0016887: ATPase activity	7.97E-03
51	GO:0008514: organic anion transmembrane transporter activity	8.00E-03
52	GO:0004791: thioredoxin-disulfide reductase activity	9.91E-03
53	GO:0010181: FMN binding	9.91E-03
54	GO:0030246: carbohydrate binding	1.38E-02
55	GO:0003746: translation elongation factor activity	2.02E-02
56	GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	2.02E-02
57	GO:0005198: structural molecule activity	2.63E-02
58	GO:0005515: protein binding	3.81E-02
59	GO:0000166: nucleotide binding	4.33E-02

Rank	GO Term	Adjusted P value
1	GO:0019774: proteasome core complex, beta-subunit complex	0.00E+00
2	GO:0000327: lytic vacuole within protein storage vacuole	0.00E+00
3	GO:0000502: proteasome complex	5.69E-58
4	GO:0005839: proteasome core complex	1.48E-39
5	GO:0019773: proteasome core complex, alpha-subunit complex	1.19E-16
6	GO:0008541: proteasome regulatory particle, lid subcomplex	3.05E-15
7	GO:0005788: endoplasmic reticulum lumen	1.64E-11
8	GO:0005774: vacuolar membrane	1.37E-10
9	GO:0005783: endoplasmic reticulum	1.63E-09
10	GO:0005829: cytosol	1.63E-09
11	GO:0031595: nuclear proteasome complex	4.26E-07
12	GO:0005773: vacuole	1.52E-06
13	GO:0005838: proteasome regulatory particle	2.36E-06
14	GO:0005737: cytoplasm	1.45E-05
15	GO:0031597: cytosolic proteasome complex	3.74E-05
16	GO:0000836: Hrd1p ubiquitin ligase complex	1.10E-04
17	GO:0044322: endoplasmic reticulum quality control compartment	1.10E-04
18	GO:0008540: proteasome regulatory particle, base subcomplex	1.24E-04
19	GO:0022626: cytosolic ribosome	3.55E-04
20	GO:0005758: mitochondrial intermembrane space	3.65E-04
21	GO:0046861: glyoxysomal membrane	4.25E-04
22	GO:0005741: mitochondrial outer membrane	4.43E-04
23	GO:0005886: plasma membrane	4.78E-04
24	GO:0036513: Derlin-1 retrotranslocation complex	6.10E-04
25	GO:0005849: mRNA cleavage factor complex	6.10E-04
26	GO:0033180: proton-transporting V-type ATPase, V1 domain	6.10E-04
27	GO:0016471: vacuolar proton-transporting V-type ATPase complex	8.10E-04
28	GO:0032580: Golgi cisterna membrane	1.05E-03
29	GO:0033116: endoplasmic reticulum-Golgi intermediate compartment membrane	1.75E-03
30	GO:0000326: protein storage vacuole	2.32E-03
31	GO:0046930: pore complex	2.32E-03
32	GO:0009514: glyoxysome	2.32E-03
33	GO:0005742: mitochondrial outer membrane translocase complex	2.32E-03
34	GO:0005789: endoplasmic reticulum membrane	2.81E-03
35	GO:0005769: early endosome	5.44E-03
36	GO:0005794: Golgi apparatus	5.76E-03
37	GO:0070469: respiratory chain	6.25E-03
38	GO:0009506: plasmodesma	7.18E-03
39	GO:0005744: mitochondrial inner membrane presequence translocase complex	8.00E-03
40	GO:0009705: plant-type vacuole membrane	8.60E-03
41	GO:0009507: chloroplast	8.67E-03
42	GO:0080008: Cul4-RING E3 ubiquitin ligase complex	1.46E-02
43	GO:0005643: nuclear pore	1.71E-02
44	GO:0000325: plant-type vacuole	1.89E-02
45	GO:0005819: spindle	2.15E-02
46	GO:0005743: mitochondrial inner membrane	2.28E-02
47	GO:0009505: plant-type cell wall	3.07E-02
48	GO:0005635: nuclear envelope	3.14E-02
49	GO:0010008: endosome membrane	3.45E-02
50	GO:0048046: apoplast	3.91E-02
51	GO:0005623: cell	4.60E-02
52	GO:0009524: phragmoplast	4.69E-02