co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT4G30470

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0035024: negative regulation of Rho protein signal transduction	0.00E+00
2	GO:0080021: response to benzoic acid	0.00E+00
3	GO:0019593: mannitol biosynthetic process	0.00E+00
4	GO:1904526: regulation of microtubule binding	0.00E+00
5	GO:0009873: ethylene-activated signaling pathway	2.14E-05
6	GO:0009697: salicylic acid biosynthetic process	8.85E-05
7	GO:0009414: response to water deprivation	9.96E-05
8	GO:0045926: negative regulation of growth	1.76E-04
9	GO:0070417: cellular response to cold	2.25E-04
10	GO:1902039: negative regulation of seed dormancy process	2.92E-04
11	GO:0046208: spermine catabolic process	2.92E-04
12	GO:0009609: response to symbiotic bacterium	2.92E-04
13	GO:0051180: vitamin transport	2.92E-04
14	GO:0030974: thiamine pyrophosphate transport	2.92E-04
15	GO:0009865: pollen tube adhesion	2.92E-04
16	GO:0042538: hyperosmotic salinity response	3.08E-04
17	GO:0009611: response to wounding	3.17E-04
18	GO:2000280: regulation of root development	5.10E-04
19	GO:0010029: regulation of seed germination	6.38E-04
20	GO:0006970: response to osmotic stress	6.39E-04
21	GO:0010507: negative regulation of autophagy	6.40E-04
22	GO:0031407: oxylipin metabolic process	6.40E-04
23	GO:0010289: homogalacturonan biosynthetic process	6.40E-04
24	GO:0006898: receptor-mediated endocytosis	6.40E-04
25	GO:0015893: drug transport	6.40E-04
26	GO:0048838: release of seed from dormancy	6.40E-04
27	GO:1901679: nucleotide transmembrane transport	6.40E-04
28	GO:0015786: UDP-glucose transport	6.40E-04
29	GO:0030148: sphingolipid biosynthetic process	6.86E-04
30	GO:0000038: very long-chain fatty acid metabolic process	6.86E-04
31	GO:0018107: peptidyl-threonine phosphorylation	8.88E-04
32	GO:0009737: response to abscisic acid	9.14E-04
33	GO:0010359: regulation of anion channel activity	1.04E-03
34	GO:0010288: response to lead ion	1.04E-03
35	GO:0090630: activation of GTPase activity	1.04E-03
36	GO:0009961: response to 1-aminocyclopropane-1-carboxylic acid	1.04E-03
37	GO:0015783: GDP-fucose transport	1.04E-03
38	GO:0010325: raffinose family oligosaccharide biosynthetic process	1.04E-03
39	GO:0034427: nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5'	1.04E-03
40	GO:0006598: polyamine catabolic process	1.04E-03
41	GO:0080121: AMP transport	1.04E-03
42	GO:0044210: 'de novo' CTP biosynthetic process	1.04E-03
43	GO:0016045: detection of bacterium	1.04E-03
44	GO:0070588: calcium ion transmembrane transport	1.11E-03
45	GO:0006633: fatty acid biosynthetic process	1.19E-03
46	GO:0010025: wax biosynthetic process	1.24E-03
47	GO:0045490: pectin catabolic process	1.37E-03
48	GO:0006624: vacuolar protein processing	1.48E-03
49	GO:0010371: regulation of gibberellin biosynthetic process	1.48E-03
50	GO:0072334: UDP-galactose transmembrane transport	1.48E-03
51	GO:0009751: response to salicylic acid	1.57E-03
52	GO:0031408: oxylipin biosynthetic process	1.66E-03
53	GO:0006470: protein dephosphorylation	1.68E-03
54	GO:0001944: vasculature development	1.98E-03
55	GO:0046345: abscisic acid catabolic process	1.99E-03
56	GO:0009939: positive regulation of gibberellic acid mediated signaling pathway	1.99E-03
57	GO:0022622: root system development	1.99E-03
58	GO:0006552: leucine catabolic process	1.99E-03
59	GO:0071585: detoxification of cadmium ion	1.99E-03
60	GO:0015867: ATP transport	1.99E-03
61	GO:0042991: transcription factor import into nucleus	1.99E-03
62	GO:0042335: cuticle development	2.51E-03
63	GO:0006665: sphingolipid metabolic process	2.54E-03
64	GO:0032957: inositol trisphosphate metabolic process	2.54E-03
65	GO:0009247: glycolipid biosynthetic process	2.54E-03
66	GO:0070897: DNA-templated transcriptional preinitiation complex assembly	2.54E-03
67	GO:0006656: phosphatidylcholine biosynthetic process	2.54E-03
68	GO:0048868: pollen tube development	2.71E-03
69	GO:0006574: valine catabolic process	3.14E-03
70	GO:0006751: glutathione catabolic process	3.14E-03
71	GO:0015866: ADP transport	3.14E-03
72	GO:0045962: positive regulation of development, heterochronic	3.14E-03
73	GO:0035435: phosphate ion transmembrane transport	3.14E-03
74	GO:1900425: negative regulation of defense response to bacterium	3.14E-03
75	GO:0010337: regulation of salicylic acid metabolic process	3.14E-03
76	GO:0000302: response to reactive oxygen species	3.34E-03
77	GO:0042545: cell wall modification	3.38E-03
78	GO:0009624: response to nematode	3.51E-03
79	GO:0098655: cation transmembrane transport	3.77E-03
80	GO:0010555: response to mannitol	3.77E-03
81	GO:0042372: phylloquinone biosynthetic process	3.77E-03
82	GO:0009082: branched-chain amino acid biosynthetic process	3.77E-03
83	GO:0006355: regulation of transcription, DNA-templated	3.87E-03
84	GO:0010200: response to chitin	3.89E-03
85	GO:0019760: glucosinolate metabolic process	4.04E-03
86	GO:1902074: response to salt	4.45E-03
87	GO:0032880: regulation of protein localization	4.45E-03
88	GO:0006401: RNA catabolic process	4.45E-03
89	GO:0030497: fatty acid elongation	4.45E-03
90	GO:0009788: negative regulation of abscisic acid-activated signaling pathway	5.10E-03
91	GO:0019375: galactolipid biosynthetic process	5.17E-03
92	GO:0009704: de-etiolation	5.17E-03
93	GO:2000070: regulation of response to water deprivation	5.17E-03
94	GO:0007155: cell adhesion	5.17E-03
95	GO:0009061: anaerobic respiration	5.17E-03
96	GO:0009819: drought recovery	5.17E-03
97	GO:0048193: Golgi vesicle transport	5.92E-03
98	GO:0010345: suberin biosynthetic process	6.71E-03
99	GO:0098656: anion transmembrane transport	6.71E-03
100	GO:0090305: nucleic acid phosphodiester bond hydrolysis	6.71E-03
101	GO:0000184: nuclear-transcribed mRNA catabolic process, nonsense-mediated decay	6.71E-03
102	GO:0042761: very long-chain fatty acid biosynthetic process	7.54E-03
103	GO:0009651: response to salt stress	7.77E-03
104	GO:0009641: shade avoidance	8.40E-03
105	GO:0006949: syncytium formation	8.40E-03
106	GO:0055062: phosphate ion homeostasis	8.40E-03
107	GO:0009409: response to cold	8.66E-03
108	GO:0006839: mitochondrial transport	9.10E-03
109	GO:0052544: defense response by callose deposition in cell wall	9.30E-03
110	GO:0006631: fatty acid metabolic process	9.49E-03
111	GO:0051707: response to other organism	1.03E-02
112	GO:0050826: response to freezing	1.12E-02
113	GO:0009725: response to hormone	1.12E-02
114	GO:0005986: sucrose biosynthetic process	1.12E-02
115	GO:2000012: regulation of auxin polar transport	1.12E-02
116	GO:0030048: actin filament-based movement	1.12E-02
117	GO:0006351: transcription, DNA-templated	1.26E-02
118	GO:0010030: positive regulation of seed germination	1.32E-02
119	GO:0010167: response to nitrate	1.32E-02
120	GO:0009809: lignin biosynthetic process	1.39E-02
121	GO:0006364: rRNA processing	1.39E-02
122	GO:0009833: plant-type primary cell wall biogenesis	1.43E-02
123	GO:0071555: cell wall organization	1.51E-02
124	GO:0006979: response to oxidative stress	1.53E-02
125	GO:0009695: jasmonic acid biosynthetic process	1.65E-02
126	GO:0048367: shoot system development	1.70E-02
127	GO:0010431: seed maturation	1.76E-02
128	GO:0009269: response to desiccation	1.76E-02
129	GO:0080092: regulation of pollen tube growth	1.88E-02
130	GO:0009831: plant-type cell wall modification involved in multidimensional cell growth	2.00E-02
131	GO:0018105: peptidyl-serine phosphorylation	2.05E-02
132	GO:0048443: stamen development	2.12E-02
133	GO:0008284: positive regulation of cell proliferation	2.25E-02
134	GO:0055085: transmembrane transport	2.27E-02
135	GO:0010501: RNA secondary structure unwinding	2.37E-02
136	GO:0042631: cellular response to water deprivation	2.37E-02
137	GO:0000226: microtubule cytoskeleton organization	2.37E-02
138	GO:0010268: brassinosteroid homeostasis	2.50E-02
139	GO:0009960: endosperm development	2.50E-02
140	GO:0045489: pectin biosynthetic process	2.50E-02
141	GO:0071472: cellular response to salt stress	2.50E-02
142	GO:0009958: positive gravitropism	2.50E-02
143	GO:0006520: cellular amino acid metabolic process	2.50E-02
144	GO:0009058: biosynthetic process	2.63E-02
145	GO:0006814: sodium ion transport	2.64E-02
146	GO:0010183: pollen tube guidance	2.77E-02
147	GO:0016132: brassinosteroid biosynthetic process	2.91E-02
148	GO:0080156: mitochondrial mRNA modification	2.91E-02
149	GO:0048510: regulation of timing of transition from vegetative to reproductive phase	2.91E-02
150	GO:0009790: embryo development	2.91E-02
151	GO:0010193: response to ozone	2.91E-02
152	GO:0009828: plant-type cell wall loosening	3.34E-02
153	GO:0016125: sterol metabolic process	3.34E-02
154	GO:0009639: response to red or far red light	3.34E-02
155	GO:0010150: leaf senescence	3.43E-02
156	GO:0071805: potassium ion transmembrane transport	3.48E-02
157	GO:0006904: vesicle docking involved in exocytosis	3.48E-02
158	GO:0051607: defense response to virus	3.63E-02
159	GO:0010027: thylakoid membrane organization	3.78E-02
160	GO:0009739: response to gibberellin	3.84E-02
161	GO:0009816: defense response to bacterium, incompatible interaction	3.93E-02
162	GO:0016567: protein ubiquitination	4.00E-02
163	GO:0009627: systemic acquired resistance	4.09E-02
164	GO:0010468: regulation of gene expression	4.09E-02
165	GO:0016049: cell growth	4.41E-02
166	GO:0048767: root hair elongation	4.73E-02

Rank	GO Term	Adjusted P value
1	GO:0052903: N1-acetylspermine:oxygen oxidoreductase (3-acetamidopropanal-forming) activity	0.00E+00
2	GO:0017048: Rho GTPase binding	0.00E+00
3	GO:0052902: spermidine:oxygen oxidoreductase (3-aminopropanal-forming) activity	0.00E+00
4	GO:0008419: RNA lariat debranching enzyme activity	0.00E+00
5	GO:0052631: sphingolipid delta-8 desaturase activity	0.00E+00
6	GO:0052904: N1-acetylspermidine:oxygen oxidoreductase (3-acetamidopropanal-forming) activity	0.00E+00
7	GO:0009922: fatty acid elongase activity	8.97E-07
8	GO:0102337: 3-oxo-cerotoyl-CoA synthase activity	2.86E-06
9	GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity	2.86E-06
10	GO:0102336: 3-oxo-arachidoyl-CoA synthase activity	2.86E-06
11	GO:0016629: 12-oxophytodienoate reductase activity	3.89E-06
12	GO:0070330: aromatase activity	1.39E-05
13	GO:0003883: CTP synthase activity	3.12E-05
14	GO:0018685: alkane 1-monooxygenase activity	8.85E-05
15	GO:0052747: sinapyl alcohol dehydrogenase activity	2.91E-04
16	GO:0090422: thiamine pyrophosphate transporter activity	2.92E-04
17	GO:0004105: choline-phosphate cytidylyltransferase activity	2.92E-04
18	GO:0008909: isochorismate synthase activity	2.92E-04
19	GO:0004103: choline kinase activity	6.40E-04
20	GO:0001047: core promoter binding	6.40E-04
21	GO:0017040: ceramidase activity	6.40E-04
22	GO:0003839: gamma-glutamylcyclotransferase activity	6.40E-04
23	GO:0052901: spermine:oxygen oxidoreductase (spermidine-forming) activity	6.40E-04
24	GO:0046509: 1,2-diacylglycerol 3-beta-galactosyltransferase activity	6.40E-04
25	GO:0045551: cinnamyl-alcohol dehydrogenase activity	7.84E-04
26	GO:0008083: growth factor activity	9.97E-04
27	GO:0005457: GDP-fucose transmembrane transporter activity	1.04E-03
28	GO:0047325: inositol tetrakisphosphate 1-kinase activity	1.04E-03
29	GO:0046592: polyamine oxidase activity	1.04E-03
30	GO:0052726: inositol-1,3,4-trisphosphate 5-kinase activity	1.04E-03
31	GO:0047274: galactinol-sucrose galactosyltransferase activity	1.04E-03
32	GO:0010295: (+)-abscisic acid 8'-hydroxylase activity	1.04E-03
33	GO:0004722: protein serine/threonine phosphatase activity	1.31E-03
34	GO:0044212: transcription regulatory region DNA binding	1.46E-03
35	GO:0005460: UDP-glucose transmembrane transporter activity	1.48E-03
36	GO:0052656: L-isoleucine transaminase activity	1.48E-03
37	GO:0052654: L-leucine transaminase activity	1.48E-03
38	GO:0052725: inositol-1,3,4-trisphosphate 6-kinase activity	1.48E-03
39	GO:0052655: L-valine transaminase activity	1.48E-03
40	GO:0005432: calcium:sodium antiporter activity	1.48E-03
41	GO:0035250: UDP-galactosyltransferase activity	1.48E-03
42	GO:0003700: transcription factor activity, sequence-specific DNA binding	1.78E-03
43	GO:0004301: epoxide hydrolase activity	1.99E-03
44	GO:0004084: branched-chain-amino-acid transaminase activity	1.99E-03
45	GO:0070696: transmembrane receptor protein serine/threonine kinase binding	2.54E-03
46	GO:0005459: UDP-galactose transmembrane transporter activity	2.54E-03
47	GO:0080122: AMP transmembrane transporter activity	2.54E-03
48	GO:0045330: aspartyl esterase activity	2.55E-03
49	GO:0010181: FMN binding	2.91E-03
50	GO:0004872: receptor activity	3.12E-03
51	GO:0030599: pectinesterase activity	3.25E-03
52	GO:0043565: sequence-specific DNA binding	3.46E-03
53	GO:0005347: ATP transmembrane transporter activity	3.77E-03
54	GO:0015217: ADP transmembrane transporter activity	3.77E-03
55	GO:0004702: signal transducer, downstream of receptor, with serine/threonine kinase activity	4.30E-03
56	GO:0015491: cation:cation antiporter activity	5.17E-03
57	GO:0004004: ATP-dependent RNA helicase activity	5.68E-03
58	GO:0005267: potassium channel activity	5.92E-03
59	GO:0008757: S-adenosylmethionine-dependent methyltransferase activity	5.98E-03
60	GO:0015297: antiporter activity	6.63E-03
61	GO:0016308: 1-phosphatidylinositol-4-phosphate 5-kinase activity	8.40E-03
62	GO:0004864: protein phosphatase inhibitor activity	8.40E-03
63	GO:0005262: calcium channel activity	1.12E-02
64	GO:0015114: phosphate ion transmembrane transporter activity	1.12E-02
65	GO:0005388: calcium-transporting ATPase activity	1.12E-02
66	GO:0000175: 3'-5'-exoribonuclease activity	1.12E-02
67	GO:0042973: glucan endo-1,3-beta-D-glucosidase activity	1.22E-02
68	GO:0003774: motor activity	1.22E-02
69	GO:0008146: sulfotransferase activity	1.32E-02
70	GO:0017025: TBP-class protein binding	1.32E-02
71	GO:0004857: enzyme inhibitor activity	1.54E-02
72	GO:0004540: ribonuclease activity	1.76E-02
73	GO:0004707: MAP kinase activity	1.76E-02
74	GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity	1.88E-02
75	GO:0030570: pectate lyase activity	2.00E-02
76	GO:0016746: transferase activity, transferring acyl groups	2.05E-02
77	GO:0018024: histone-lysine N-methyltransferase activity	2.25E-02
78	GO:0004842: ubiquitin-protein transferase activity	2.62E-02
79	GO:0046872: metal ion binding	2.97E-02
80	GO:0004197: cysteine-type endopeptidase activity	3.05E-02
81	GO:0004518: nuclease activity	3.05E-02
82	GO:0004675: transmembrane receptor protein serine/threonine kinase activity	3.20E-02
83	GO:0046910: pectinesterase inhibitor activity	3.20E-02
84	GO:0005096: GTPase activator activity	4.73E-02

Rank	GO Term	Adjusted P value
1	GO:0070382: exocytic vesicle	2.92E-04
2	GO:0046658: anchored component of plasma membrane	4.22E-04
3	GO:0031357: integral component of chloroplast inner membrane	6.40E-04
4	GO:0045177: apical part of cell	1.48E-03
5	GO:0000178: exosome (RNase complex)	2.54E-03
6	GO:0031225: anchored component of membrane	2.86E-03
7	GO:0000793: condensed chromosome	3.14E-03
8	GO:0005622: intracellular	3.71E-03
9	GO:0000794: condensed nuclear chromosome	4.45E-03
10	GO:0005938: cell cortex	1.12E-02
11	GO:0005618: cell wall	1.14E-02
12	GO:0005743: mitochondrial inner membrane	2.41E-02
13	GO:0000145: exocyst	3.05E-02
14	GO:0005694: chromosome	3.05E-02
15	GO:0071944: cell periphery	3.19E-02
16	GO:0005778: peroxisomal membrane	3.48E-02
17	GO:0000932: P-body	3.78E-02