co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT4G30120

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0019379: sulfate assimilation, phosphoadenylyl sulfate reduction by phosphoadenylyl-sulfate reductase (thioredoxin)	0.00E+00
2	GO:0009661: chromoplast organization	0.00E+00
3	GO:0071244: cellular response to carbon dioxide	0.00E+00
4	GO:0033317: pantothenate biosynthetic process from valine	0.00E+00
5	GO:0090470: shoot organ boundary specification	0.00E+00
6	GO:0009902: chloroplast relocation	1.12E-05
7	GO:0009903: chloroplast avoidance movement	3.95E-05
8	GO:0071461: cellular response to redox state	1.14E-04
9	GO:1902265: abscisic acid homeostasis	1.14E-04
10	GO:0080005: photosystem stoichiometry adjustment	2.65E-04
11	GO:0007154: cell communication	2.65E-04
12	GO:1904143: positive regulation of carotenoid biosynthetic process	2.65E-04
13	GO:0080183: response to photooxidative stress	2.65E-04
14	GO:0043100: pyrimidine nucleobase salvage	2.65E-04
15	GO:0042754: negative regulation of circadian rhythm	2.65E-04
16	GO:2000030: regulation of response to red or far red light	2.65E-04
17	GO:0006898: receptor-mediated endocytosis	2.65E-04
18	GO:1901562: response to paraquat	4.38E-04
19	GO:0015940: pantothenate biosynthetic process	4.38E-04
20	GO:0044375: regulation of peroxisome size	4.38E-04
21	GO:0030418: nicotianamine biosynthetic process	4.38E-04
22	GO:0031022: nuclear migration along microfilament	4.38E-04
23	GO:0019419: sulfate reduction	4.38E-04
24	GO:0051603: proteolysis involved in cellular protein catabolic process	4.44E-04
25	GO:2001141: regulation of RNA biosynthetic process	6.29E-04
26	GO:0010371: regulation of gibberellin biosynthetic process	6.29E-04
27	GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity	6.29E-04
28	GO:0071483: cellular response to blue light	8.35E-04
29	GO:0010021: amylopectin biosynthetic process	8.35E-04
30	GO:0006508: proteolysis	8.88E-04
31	GO:0009904: chloroplast accumulation movement	1.05E-03
32	GO:0010236: plastoquinone biosynthetic process	1.05E-03
33	GO:0016120: carotene biosynthetic process	1.05E-03
34	GO:1902456: regulation of stomatal opening	1.29E-03
35	GO:0006555: methionine metabolic process	1.29E-03
36	GO:0010189: vitamin E biosynthetic process	1.54E-03
37	GO:0019509: L-methionine salvage from methylthioadenosine	1.54E-03
38	GO:0050790: regulation of catalytic activity	1.81E-03
39	GO:0030091: protein repair	2.09E-03
40	GO:0050821: protein stabilization	2.09E-03
41	GO:0009231: riboflavin biosynthetic process	2.09E-03
42	GO:0016559: peroxisome fission	2.09E-03
43	GO:0009787: regulation of abscisic acid-activated signaling pathway	2.09E-03
44	GO:0009658: chloroplast organization	2.26E-03
45	GO:0071482: cellular response to light stimulus	2.39E-03
46	GO:0015996: chlorophyll catabolic process	2.39E-03
47	GO:0010233: phloem transport	2.39E-03
48	GO:0048574: long-day photoperiodism, flowering	2.39E-03
49	GO:0000103: sulfate assimilation	3.36E-03
50	GO:0006879: cellular iron ion homeostasis	3.71E-03
51	GO:0006352: DNA-templated transcription, initiation	3.71E-03
52	GO:0000272: polysaccharide catabolic process	3.71E-03
53	GO:0016485: protein processing	3.71E-03
54	GO:0008285: negative regulation of cell proliferation	3.71E-03
55	GO:0030048: actin filament-based movement	4.43E-03
56	GO:0009767: photosynthetic electron transport chain	4.43E-03
57	GO:0055114: oxidation-reduction process	4.59E-03
58	GO:0010207: photosystem II assembly	4.81E-03
59	GO:0007015: actin filament organization	4.81E-03
60	GO:0071732: cellular response to nitric oxide	5.21E-03
61	GO:0007031: peroxisome organization	5.21E-03
62	GO:0006071: glycerol metabolic process	5.61E-03
63	GO:0051017: actin filament bundle assembly	6.03E-03
64	GO:0019344: cysteine biosynthetic process	6.03E-03
65	GO:0010073: meristem maintenance	6.45E-03
66	GO:0008299: isoprenoid biosynthetic process	6.45E-03
67	GO:0016226: iron-sulfur cluster assembly	7.34E-03
68	GO:0071369: cellular response to ethylene stimulus	7.79E-03
69	GO:0010227: floral organ abscission	7.79E-03
70	GO:0009693: ethylene biosynthetic process	7.79E-03
71	GO:0006817: phosphate ion transport	8.26E-03
72	GO:0007623: circadian rhythm	9.00E-03
73	GO:0006520: cellular amino acid metabolic process	9.73E-03
74	GO:0010182: sugar mediated signaling pathway	9.73E-03
75	GO:0009739: response to gibberellin	1.01E-02
76	GO:0042752: regulation of circadian rhythm	1.02E-02
77	GO:0035556: intracellular signal transduction	1.08E-02
78	GO:0019252: starch biosynthetic process	1.08E-02
79	GO:0048510: regulation of timing of transition from vegetative to reproductive phase	1.13E-02
80	GO:0030163: protein catabolic process	1.24E-02
81	GO:0071281: cellular response to iron ion	1.24E-02
82	GO:0006464: cellular protein modification process	1.29E-02
83	GO:0010029: regulation of seed germination	1.52E-02
84	GO:0009723: response to ethylene	1.62E-02
85	GO:0010411: xyloglucan metabolic process	1.64E-02
86	GO:0018298: protein-chromophore linkage	1.77E-02
87	GO:0006811: ion transport	1.89E-02
88	GO:0010043: response to zinc ion	1.96E-02
89	GO:0007568: aging	1.96E-02
90	GO:0045454: cell redox homeostasis	2.08E-02
91	GO:0009637: response to blue light	2.09E-02
92	GO:0009640: photomorphogenesis	2.50E-02
93	GO:0009751: response to salicylic acid	2.53E-02
94	GO:0009753: response to jasmonic acid	2.75E-02
95	GO:0006855: drug transmembrane transport	2.79E-02
96	GO:0009909: regulation of flower development	3.33E-02
97	GO:0009058: biosynthetic process	4.84E-02

Rank	GO Term	Adjusted P value
1	GO:0047504: (-)-menthol dehydrogenase activity	0.00E+00
2	GO:0047501: (+)-neomenthol dehydrogenase activity	0.00E+00
3	GO:0004592: pantoate-beta-alanine ligase activity	0.00E+00
4	GO:0050342: tocopherol O-methyltransferase activity	0.00E+00
5	GO:0009673: low-affinity phosphate transmembrane transporter activity	0.00E+00
6	GO:0015205: nucleobase transmembrane transporter activity	0.00E+00
7	GO:0008106: alcohol dehydrogenase (NADP+) activity	5.94E-06
8	GO:0016783: sulfurtransferase activity	1.14E-04
9	GO:0004328: formamidase activity	1.14E-04
10	GO:0051741: 2-methyl-6-phytyl-1,4-benzoquinone methyltransferase activity	1.14E-04
11	GO:0008793: aromatic-amino-acid:2-oxoglutarate aminotransferase activity	1.14E-04
12	GO:0016784: 3-mercaptopyruvate sulfurtransferase activity	1.14E-04
13	GO:0004719: protein-L-isoaspartate (D-aspartate) O-methyltransferase activity	1.14E-04
14	GO:0009973: adenylyl-sulfate reductase activity	2.65E-04
15	GO:0004604: phosphoadenylyl-sulfate reductase (thioredoxin) activity	2.65E-04
16	GO:0033741: adenylyl-sulfate reductase (glutathione) activity	2.65E-04
17	GO:0008686: 3,4-dihydroxy-2-butanone-4-phosphate synthase activity	2.65E-04
18	GO:0033201: alpha-1,4-glucan synthase activity	2.65E-04
19	GO:0050347: trans-octaprenyltranstransferase activity	2.65E-04
20	GO:0052924: all-trans-nonaprenyl-diphosphate synthase (geranylgeranyl-diphosphate specific) activity	2.65E-04
21	GO:0004046: aminoacylase activity	2.65E-04
22	GO:0003955: NAD(P)H dehydrogenase (quinone) activity	4.38E-04
23	GO:0004180: carboxypeptidase activity	4.38E-04
24	GO:0010309: acireductone dioxygenase [iron(II)-requiring] activity	4.38E-04
25	GO:0004373: glycogen (starch) synthase activity	4.38E-04
26	GO:0003913: DNA photolyase activity	4.38E-04
27	GO:0030410: nicotianamine synthase activity	4.38E-04
28	GO:0004557: alpha-galactosidase activity	4.38E-04
29	GO:0003935: GTP cyclohydrolase II activity	4.38E-04
30	GO:0004792: thiosulfate sulfurtransferase activity	6.29E-04
31	GO:0016811: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides	6.29E-04
32	GO:0009011: starch synthase activity	8.35E-04
33	GO:0001053: plastid sigma factor activity	8.35E-04
34	GO:0016987: sigma factor activity	8.35E-04
35	GO:0048038: quinone binding	9.17E-04
36	GO:0004069: L-aspartate:2-oxoglutarate aminotransferase activity	1.29E-03
37	GO:0004709: MAP kinase kinase kinase activity	1.29E-03
38	GO:0000293: ferric-chelate reductase activity	1.29E-03
39	GO:0016161: beta-amylase activity	1.54E-03
40	GO:0008236: serine-type peptidase activity	1.61E-03
41	GO:0009881: photoreceptor activity	1.81E-03
42	GO:0016847: 1-aminocyclopropane-1-carboxylate synthase activity	2.09E-03
43	GO:0016491: oxidoreductase activity	2.35E-03
44	GO:0008889: glycerophosphodiester phosphodiesterase activity	2.70E-03
45	GO:0004185: serine-type carboxypeptidase activity	2.74E-03
46	GO:0005315: inorganic phosphate transmembrane transporter activity	4.43E-03
47	GO:0031072: heat shock protein binding	4.43E-03
48	GO:0042973: glucan endo-1,3-beta-D-glucosidase activity	4.81E-03
49	GO:0004176: ATP-dependent peptidase activity	6.89E-03
50	GO:0008080: N-acetyltransferase activity	9.73E-03
51	GO:0010181: FMN binding	1.02E-02
52	GO:0042802: identical protein binding	1.15E-02
53	GO:0004197: cysteine-type endopeptidase activity	1.18E-02
54	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	1.24E-02
55	GO:0016791: phosphatase activity	1.29E-02
56	GO:0008483: transaminase activity	1.35E-02
57	GO:0008237: metallopeptidase activity	1.35E-02
58	GO:0016413: O-acetyltransferase activity	1.40E-02
59	GO:0004721: phosphoprotein phosphatase activity	1.64E-02
60	GO:0030247: polysaccharide binding	1.64E-02
61	GO:0015238: drug transmembrane transporter activity	1.83E-02
62	GO:0004222: metalloendopeptidase activity	1.89E-02
63	GO:0030145: manganese ion binding	1.96E-02
64	GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	2.09E-02
65	GO:0004712: protein serine/threonine/tyrosine kinase activity	2.22E-02
66	GO:0015293: symporter activity	2.72E-02
67	GO:0003899: DNA-directed 5'-3' RNA polymerase activity	3.09E-02
68	GO:0016298: lipase activity	3.17E-02
69	GO:0008234: cysteine-type peptidase activity	3.33E-02
70	GO:0004672: protein kinase activity	3.95E-02
71	GO:0016887: ATPase activity	3.96E-02
72	GO:0051082: unfolded protein binding	3.98E-02
73	GO:0015035: protein disulfide oxidoreductase activity	4.06E-02
74	GO:0016746: transferase activity, transferring acyl groups	4.06E-02
75	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	4.75E-02

Rank	GO Term	Adjusted P value
1	GO:0009507: chloroplast	7.43E-09
2	GO:0005773: vacuole	2.74E-04
3	GO:0009526: plastid envelope	8.35E-04
4	GO:0031982: vesicle	2.09E-03
5	GO:0009501: amyloplast	2.09E-03
6	GO:0005779: integral component of peroxisomal membrane	2.39E-03
7	GO:0005777: peroxisome	2.58E-03
8	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	2.70E-03
9	GO:0031969: chloroplast membrane	2.96E-03
10	GO:0005884: actin filament	3.71E-03
11	GO:0005764: lysosome	4.81E-03
12	GO:0009706: chloroplast inner membrane	5.21E-03
13	GO:0009535: chloroplast thylakoid membrane	5.95E-03
14	GO:0009532: plastid stroma	6.89E-03
15	GO:0009536: plastid	8.32E-03
16	GO:0009505: plant-type cell wall	8.60E-03
17	GO:0005778: peroxisomal membrane	1.35E-02
18	GO:0005747: mitochondrial respiratory chain complex I	3.57E-02
19	GO:0009570: chloroplast stroma	3.72E-02
20	GO:0010287: plastoglobule	4.49E-02
21	GO:0005623: cell	4.75E-02