GO Enrichment Analysis of Co-expressed Genes with
AT4G29830
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0090239: regulation of histone H4 acetylation | 0.00E+00 |
| 2 | GO:0032211: negative regulation of telomere maintenance via telomerase | 0.00E+00 |
| 3 | GO:0006412: translation | 1.38E-38 |
| 4 | GO:0042254: ribosome biogenesis | 1.95E-17 |
| 5 | GO:0000027: ribosomal large subunit assembly | 4.08E-07 |
| 6 | GO:0000398: mRNA splicing, via spliceosome | 1.15E-05 |
| 7 | GO:0000413: protein peptidyl-prolyl isomerization | 6.07E-05 |
| 8 | GO:0000028: ribosomal small subunit assembly | 1.02E-04 |
| 9 | GO:0015801: aromatic amino acid transport | 1.46E-04 |
| 10 | GO:0048453: sepal formation | 1.46E-04 |
| 11 | GO:0031060: regulation of histone methylation | 1.46E-04 |
| 12 | GO:2001006: regulation of cellulose biosynthetic process | 1.46E-04 |
| 13 | GO:0000387: spliceosomal snRNP assembly | 1.88E-04 |
| 14 | GO:0006432: phenylalanyl-tRNA aminoacylation | 3.33E-04 |
| 15 | GO:0071668: plant-type cell wall assembly | 3.33E-04 |
| 16 | GO:0043981: histone H4-K5 acetylation | 3.33E-04 |
| 17 | GO:0008283: cell proliferation | 4.47E-04 |
| 18 | GO:0006406: mRNA export from nucleus | 5.33E-04 |
| 19 | GO:0010338: leaf formation | 5.47E-04 |
| 20 | GO:1902626: assembly of large subunit precursor of preribosome | 5.47E-04 |
| 21 | GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity | 7.83E-04 |
| 22 | GO:0006164: purine nucleotide biosynthetic process | 7.83E-04 |
| 23 | GO:0009165: nucleotide biosynthetic process | 1.04E-03 |
| 24 | GO:0010387: COP9 signalosome assembly | 1.04E-03 |
| 25 | GO:0006457: protein folding | 1.21E-03 |
| 26 | GO:0043248: proteasome assembly | 1.61E-03 |
| 27 | GO:0010358: leaf shaping | 1.61E-03 |
| 28 | GO:0009554: megasporogenesis | 1.93E-03 |
| 29 | GO:0009955: adaxial/abaxial pattern specification | 1.93E-03 |
| 30 | GO:0000338: protein deneddylation | 2.27E-03 |
| 31 | GO:0006826: iron ion transport | 2.27E-03 |
| 32 | GO:0009808: lignin metabolic process | 3.00E-03 |
| 33 | GO:0001510: RNA methylation | 3.00E-03 |
| 34 | GO:0006189: 'de novo' IMP biosynthetic process | 3.40E-03 |
| 35 | GO:0048589: developmental growth | 3.40E-03 |
| 36 | GO:0009245: lipid A biosynthetic process | 3.40E-03 |
| 37 | GO:0010267: production of ta-siRNAs involved in RNA interference | 3.81E-03 |
| 38 | GO:0010449: root meristem growth | 3.81E-03 |
| 39 | GO:0009965: leaf morphogenesis | 4.30E-03 |
| 40 | GO:0048229: gametophyte development | 4.67E-03 |
| 41 | GO:0016485: protein processing | 4.67E-03 |
| 42 | GO:0010015: root morphogenesis | 4.67E-03 |
| 43 | GO:0006913: nucleocytoplasmic transport | 4.67E-03 |
| 44 | GO:0016925: protein sumoylation | 5.13E-03 |
| 45 | GO:0006626: protein targeting to mitochondrion | 5.60E-03 |
| 46 | GO:2000028: regulation of photoperiodism, flowering | 5.60E-03 |
| 47 | GO:0010102: lateral root morphogenesis | 5.60E-03 |
| 48 | GO:0006446: regulation of translational initiation | 6.09E-03 |
| 49 | GO:0048467: gynoecium development | 6.09E-03 |
| 50 | GO:0048440: carpel development | 6.09E-03 |
| 51 | GO:0010020: chloroplast fission | 6.09E-03 |
| 52 | GO:0009933: meristem structural organization | 6.09E-03 |
| 53 | GO:0006414: translational elongation | 6.46E-03 |
| 54 | GO:0010039: response to iron ion | 6.59E-03 |
| 55 | GO:0034976: response to endoplasmic reticulum stress | 7.10E-03 |
| 56 | GO:0006289: nucleotide-excision repair | 7.63E-03 |
| 57 | GO:0009116: nucleoside metabolic process | 7.63E-03 |
| 58 | GO:0003333: amino acid transmembrane transport | 8.73E-03 |
| 59 | GO:0007005: mitochondrion organization | 9.30E-03 |
| 60 | GO:0016226: iron-sulfur cluster assembly | 9.30E-03 |
| 61 | GO:0010082: regulation of root meristem growth | 9.89E-03 |
| 62 | GO:0048443: stamen development | 1.05E-02 |
| 63 | GO:0010305: leaf vascular tissue pattern formation | 1.24E-02 |
| 64 | GO:0009556: microsporogenesis | 1.37E-02 |
| 65 | GO:0009735: response to cytokinin | 1.38E-02 |
| 66 | GO:0048510: regulation of timing of transition from vegetative to reproductive phase | 1.43E-02 |
| 67 | GO:0015031: protein transport | 1.47E-02 |
| 68 | GO:0031047: gene silencing by RNA | 1.50E-02 |
| 69 | GO:0008380: RNA splicing | 1.52E-02 |
| 70 | GO:0010286: heat acclimation | 1.72E-02 |
| 71 | GO:0016049: cell growth | 2.17E-02 |
| 72 | GO:0000724: double-strand break repair via homologous recombination | 2.58E-02 |
| 73 | GO:0006865: amino acid transport | 2.58E-02 |
| 74 | GO:0006839: mitochondrial transport | 2.92E-02 |
| 75 | GO:0006281: DNA repair | 3.60E-02 |
| 76 | GO:0006397: mRNA processing | 3.75E-02 |
| 77 | GO:0009585: red, far-red light phototransduction | 3.94E-02 |
| 78 | GO:0009909: regulation of flower development | 4.24E-02 |
| 79 | GO:0009553: embryo sac development | 4.96E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0004641: phosphoribosylformylglycinamidine cyclo-ligase activity | 0.00E+00 |
| 2 | GO:0003735: structural constituent of ribosome | 5.88E-50 |
| 3 | GO:0003729: mRNA binding | 1.49E-15 |
| 4 | GO:0008097: 5S rRNA binding | 9.15E-06 |
| 5 | GO:0003755: peptidyl-prolyl cis-trans isomerase activity | 4.73E-05 |
| 6 | GO:0035614: snRNA stem-loop binding | 1.46E-04 |
| 7 | GO:0030619: U1 snRNA binding | 3.33E-04 |
| 8 | GO:0015173: aromatic amino acid transmembrane transporter activity | 3.33E-04 |
| 9 | GO:0004826: phenylalanine-tRNA ligase activity | 3.33E-04 |
| 10 | GO:1990585: hydroxyproline O-arabinosyltransferase activity | 3.33E-04 |
| 11 | GO:0008430: selenium binding | 5.47E-04 |
| 12 | GO:0003723: RNA binding | 6.76E-04 |
| 13 | GO:0004749: ribose phosphate diphosphokinase activity | 7.83E-04 |
| 14 | GO:0031386: protein tag | 1.31E-03 |
| 15 | GO:0005275: amine transmembrane transporter activity | 1.31E-03 |
| 16 | GO:0031177: phosphopantetheine binding | 1.61E-03 |
| 17 | GO:0000035: acyl binding | 1.93E-03 |
| 18 | GO:0008235: metalloexopeptidase activity | 2.27E-03 |
| 19 | GO:0042162: telomeric DNA binding | 2.27E-03 |
| 20 | GO:0043022: ribosome binding | 2.63E-03 |
| 21 | GO:0000036: ACP phosphopantetheine attachment site binding involved in fatty acid biosynthetic process | 2.63E-03 |
| 22 | GO:0008173: RNA methyltransferase activity | 3.00E-03 |
| 23 | GO:0004177: aminopeptidase activity | 4.67E-03 |
| 24 | GO:0000049: tRNA binding | 5.13E-03 |
| 25 | GO:0004298: threonine-type endopeptidase activity | 8.73E-03 |
| 26 | GO:0019843: rRNA binding | 9.17E-03 |
| 27 | GO:0003756: protein disulfide isomerase activity | 1.05E-02 |
| 28 | GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity | 2.25E-02 |
| 29 | GO:0050897: cobalt ion binding | 2.49E-02 |
| 30 | GO:0003746: translation elongation factor activity | 2.66E-02 |
| 31 | GO:0003697: single-stranded DNA binding | 2.66E-02 |
| 32 | GO:0042393: histone binding | 2.92E-02 |
| 33 | GO:0022857: transmembrane transporter activity | 4.85E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0043186: P granule | 0.00E+00 |
| 2 | GO:0005675: holo TFIIH complex | 0.00E+00 |
| 3 | GO:0097361: CIA complex | 0.00E+00 |
| 4 | GO:0005840: ribosome | 3.71E-43 |
| 5 | GO:0022626: cytosolic ribosome | 6.50E-40 |
| 6 | GO:0022625: cytosolic large ribosomal subunit | 4.87E-34 |
| 7 | GO:0022627: cytosolic small ribosomal subunit | 5.57E-18 |
| 8 | GO:0005730: nucleolus | 4.40E-15 |
| 9 | GO:0005737: cytoplasm | 2.90E-14 |
| 10 | GO:0005829: cytosol | 1.15E-13 |
| 11 | GO:0005732: small nucleolar ribonucleoprotein complex | 4.53E-07 |
| 12 | GO:0009506: plasmodesma | 8.85E-06 |
| 13 | GO:0005774: vacuolar membrane | 9.07E-06 |
| 14 | GO:0015935: small ribosomal subunit | 3.11E-05 |
| 15 | GO:0005685: U1 snRNP | 1.56E-04 |
| 16 | GO:0071011: precatalytic spliceosome | 1.88E-04 |
| 17 | GO:0071013: catalytic step 2 spliceosome | 2.59E-04 |
| 18 | GO:0015934: large ribosomal subunit | 2.84E-04 |
| 19 | GO:0005697: telomerase holoenzyme complex | 3.33E-04 |
| 20 | GO:0019013: viral nucleocapsid | 3.41E-04 |
| 21 | GO:0034719: SMN-Sm protein complex | 5.47E-04 |
| 22 | GO:0005853: eukaryotic translation elongation factor 1 complex | 5.47E-04 |
| 23 | GO:0000439: core TFIIH complex | 5.47E-04 |
| 24 | GO:0000502: proteasome complex | 6.52E-04 |
| 25 | GO:0016020: membrane | 6.90E-04 |
| 26 | GO:1990726: Lsm1-7-Pat1 complex | 7.83E-04 |
| 27 | GO:0005681: spliceosomal complex | 8.03E-04 |
| 28 | GO:0009706: chloroplast inner membrane | 1.01E-03 |
| 29 | GO:0000445: THO complex part of transcription export complex | 1.04E-03 |
| 30 | GO:0005682: U5 snRNP | 1.04E-03 |
| 31 | GO:0005618: cell wall | 1.06E-03 |
| 32 | GO:0005687: U4 snRNP | 1.31E-03 |
| 33 | GO:0097526: spliceosomal tri-snRNP complex | 1.31E-03 |
| 34 | GO:0005689: U12-type spliceosomal complex | 1.93E-03 |
| 35 | GO:0005801: cis-Golgi network | 1.93E-03 |
| 36 | GO:0000347: THO complex | 2.27E-03 |
| 37 | GO:0071004: U2-type prespliceosome | 2.63E-03 |
| 38 | GO:0005688: U6 snRNP | 2.63E-03 |
| 39 | GO:0019773: proteasome core complex, alpha-subunit complex | 3.00E-03 |
| 40 | GO:0046540: U4/U6 x U5 tri-snRNP complex | 3.00E-03 |
| 41 | GO:0008180: COP9 signalosome | 3.40E-03 |
| 42 | GO:0015030: Cajal body | 3.81E-03 |
| 43 | GO:0005686: U2 snRNP | 4.23E-03 |
| 44 | GO:0048471: perinuclear region of cytoplasm | 4.67E-03 |
| 45 | GO:0005852: eukaryotic translation initiation factor 3 complex | 4.67E-03 |
| 46 | GO:0008541: proteasome regulatory particle, lid subcomplex | 4.67E-03 |
| 47 | GO:0009508: plastid chromosome | 5.60E-03 |
| 48 | GO:0005773: vacuole | 6.20E-03 |
| 49 | GO:0005769: early endosome | 7.10E-03 |
| 50 | GO:0005758: mitochondrial intermembrane space | 7.63E-03 |
| 51 | GO:0070469: respiratory chain | 8.18E-03 |
| 52 | GO:0005839: proteasome core complex | 8.73E-03 |
| 53 | GO:0005886: plasma membrane | 1.28E-02 |
| 54 | GO:0009295: nucleoid | 1.72E-02 |
| 55 | GO:0009507: chloroplast | 1.79E-02 |
| 56 | GO:0030529: intracellular ribonucleoprotein complex | 1.86E-02 |
| 57 | GO:0000932: P-body | 1.86E-02 |
| 58 | GO:0080008: Cul4-RING E3 ubiquitin ligase complex | 2.16E-02 |
| 59 | GO:0000786: nucleosome | 2.58E-02 |
| 60 | GO:0005802: trans-Golgi network | 2.80E-02 |
| 61 | GO:0005743: mitochondrial inner membrane | 3.35E-02 |
| 62 | GO:0005834: heterotrimeric G-protein complex | 4.65E-02 |