Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT4G29780

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:2000630: positive regulation of miRNA metabolic process0.00E+00
2GO:0055091: phospholipid homeostasis0.00E+00
3GO:0070328: triglyceride homeostasis0.00E+00
4GO:0035024: negative regulation of Rho protein signal transduction0.00E+00
5GO:0034775: glutathione transmembrane transport0.00E+00
6GO:2000636: positive regulation of primary miRNA processing0.00E+00
7GO:0071475: cellular hyperosmotic salinity response0.00E+00
8GO:0032953: regulation of (1->3)-beta-D-glucan biosynthetic process0.00E+00
9GO:0019593: mannitol biosynthetic process0.00E+00
10GO:0071289: cellular response to nickel ion0.00E+00
11GO:0010200: response to chitin9.73E-13
12GO:0009873: ethylene-activated signaling pathway7.40E-07
13GO:0006355: regulation of transcription, DNA-templated4.53E-06
14GO:0006751: glutathione catabolic process1.21E-05
15GO:0006351: transcription, DNA-templated1.68E-05
16GO:0042344: indole glucosinolate catabolic process5.42E-05
17GO:2000280: regulation of root development1.12E-04
18GO:0052544: defense response by callose deposition in cell wall1.77E-04
19GO:0009737: response to abscisic acid1.78E-04
20GO:0035435: phosphate ion transmembrane transport4.12E-04
21GO:0051180: vitamin transport6.16E-04
22GO:0009609: response to symbiotic bacterium6.16E-04
23GO:0030974: thiamine pyrophosphate transport6.16E-04
24GO:1902265: abscisic acid homeostasis6.16E-04
25GO:0097298: regulation of nucleus size6.16E-04
26GO:0009865: pollen tube adhesion6.16E-04
27GO:0046938: phytochelatin biosynthetic process6.16E-04
28GO:0050691: regulation of defense response to virus by host6.16E-04
29GO:0006680: glucosylceramide catabolic process6.16E-04
30GO:0034620: cellular response to unfolded protein6.16E-04
31GO:0090421: embryonic meristem initiation6.16E-04
32GO:0006811: ion transport6.66E-04
33GO:0006955: immune response7.00E-04
34GO:0001944: vasculature development7.73E-04
35GO:0009819: drought recovery8.71E-04
36GO:2000070: regulation of response to water deprivation8.71E-04
37GO:0006468: protein phosphorylation9.45E-04
38GO:0045489: pectin biosynthetic process1.15E-03
39GO:0098656: anion transmembrane transport1.26E-03
40GO:0009611: response to wounding1.28E-03
41GO:0055088: lipid homeostasis1.32E-03
42GO:0015786: UDP-glucose transport1.32E-03
43GO:1901679: nucleotide transmembrane transport1.32E-03
44GO:0015908: fatty acid transport1.32E-03
45GO:0006898: receptor-mediated endocytosis1.32E-03
46GO:0015893: drug transport1.32E-03
47GO:0052542: defense response by callose deposition1.32E-03
48GO:0010507: negative regulation of autophagy1.32E-03
49GO:0015709: thiosulfate transport1.32E-03
50GO:0008616: queuosine biosynthetic process1.32E-03
51GO:0071422: succinate transmembrane transport1.32E-03
52GO:0031407: oxylipin metabolic process1.32E-03
53GO:0010289: homogalacturonan biosynthetic process1.32E-03
54GO:0007000: nucleolus organization1.32E-03
55GO:0042538: hyperosmotic salinity response1.72E-03
56GO:0019760: glucosinolate metabolic process1.93E-03
57GO:0034427: nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5'2.18E-03
58GO:1902448: positive regulation of shade avoidance2.18E-03
59GO:0080168: abscisic acid transport2.18E-03
60GO:0051211: anisotropic cell growth2.18E-03
61GO:0000280: nuclear division2.18E-03
62GO:0044210: 'de novo' CTP biosynthetic process2.18E-03
63GO:0016045: detection of bacterium2.18E-03
64GO:0010359: regulation of anion channel activity2.18E-03
65GO:0006473: protein acetylation2.18E-03
66GO:0006598: polyamine catabolic process2.18E-03
67GO:0010288: response to lead ion2.18E-03
68GO:0080121: AMP transport2.18E-03
69GO:0046786: viral replication complex formation and maintenance2.18E-03
70GO:0090630: activation of GTPase activity2.18E-03
71GO:0009961: response to 1-aminocyclopropane-1-carboxylic acid2.18E-03
72GO:0015783: GDP-fucose transport2.18E-03
73GO:0010325: raffinose family oligosaccharide biosynthetic process2.18E-03
74GO:0070301: cellular response to hydrogen peroxide3.17E-03
75GO:0015729: oxaloacetate transport3.17E-03
76GO:0033014: tetrapyrrole biosynthetic process3.17E-03
77GO:0072334: UDP-galactose transmembrane transport3.17E-03
78GO:0015700: arsenite transport3.17E-03
79GO:0080024: indolebutyric acid metabolic process3.17E-03
80GO:0055089: fatty acid homeostasis3.17E-03
81GO:0010371: regulation of gibberellin biosynthetic process3.17E-03
82GO:0009624: response to nematode3.30E-03
83GO:0070588: calcium ion transmembrane transport3.35E-03
84GO:0010025: wax biosynthetic process3.73E-03
85GO:0071585: detoxification of cadmium ion4.28E-03
86GO:0045727: positive regulation of translation4.28E-03
87GO:0022622: root system development4.28E-03
88GO:0042991: transcription factor import into nucleus4.28E-03
89GO:1902347: response to strigolactone4.28E-03
90GO:0015867: ATP transport4.28E-03
91GO:0009687: abscisic acid metabolic process4.28E-03
92GO:0046345: abscisic acid catabolic process4.28E-03
93GO:0051365: cellular response to potassium ion starvation4.28E-03
94GO:0031408: oxylipin biosynthetic process5.04E-03
95GO:0009409: response to cold5.30E-03
96GO:0006839: mitochondrial transport5.46E-03
97GO:0032957: inositol trisphosphate metabolic process5.49E-03
98GO:0009247: glycolipid biosynthetic process5.49E-03
99GO:0070897: DNA-templated transcriptional preinitiation complex assembly5.49E-03
100GO:0006873: cellular ion homeostasis5.49E-03
101GO:0048359: mucilage metabolic process involved in seed coat development5.49E-03
102GO:0071423: malate transmembrane transport5.49E-03
103GO:0009823: cytokinin catabolic process5.49E-03
104GO:0006656: phosphatidylcholine biosynthetic process5.49E-03
105GO:0048497: maintenance of floral organ identity5.49E-03
106GO:0006665: sphingolipid metabolic process5.49E-03
107GO:0009790: embryo development5.90E-03
108GO:0009414: response to water deprivation6.18E-03
109GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway6.29E-03
110GO:0047484: regulation of response to osmotic stress6.81E-03
111GO:1900425: negative regulation of defense response to bacterium6.81E-03
112GO:0010337: regulation of salicylic acid metabolic process6.81E-03
113GO:0015866: ADP transport6.81E-03
114GO:0045490: pectin catabolic process7.61E-03
115GO:0042631: cellular response to water deprivation7.70E-03
116GO:1901001: negative regulation of response to salt stress8.24E-03
117GO:0045926: negative regulation of growth8.24E-03
118GO:0010016: shoot system morphogenesis8.24E-03
119GO:0098655: cation transmembrane transport8.24E-03
120GO:2000033: regulation of seed dormancy process8.24E-03
121GO:0010555: response to mannitol8.24E-03
122GO:0006470: protein dephosphorylation9.34E-03
123GO:0007166: cell surface receptor signaling pathway9.34E-03
124GO:0007205: protein kinase C-activating G-protein coupled receptor signaling pathway9.76E-03
125GO:0030497: fatty acid elongation9.76E-03
126GO:0008272: sulfate transport9.76E-03
127GO:1902074: response to salt9.76E-03
128GO:0010103: stomatal complex morphogenesis9.76E-03
129GO:0032880: regulation of protein localization9.76E-03
130GO:0009864: induced systemic resistance, jasmonic acid mediated signaling pathway9.76E-03
131GO:0006401: RNA catabolic process9.76E-03
132GO:0000302: response to reactive oxygen species1.03E-02
133GO:0006952: defense response1.09E-02
134GO:0007155: cell adhesion1.14E-02
135GO:0009061: anaerobic respiration1.14E-02
136GO:0009938: negative regulation of gibberellic acid mediated signaling pathway1.14E-02
137GO:0009751: response to salicylic acid1.14E-02
138GO:0009690: cytokinin metabolic process1.14E-02
139GO:0019375: galactolipid biosynthetic process1.14E-02
140GO:0048367: shoot system development1.21E-02
141GO:0009639: response to red or far red light1.25E-02
142GO:0009880: embryonic pattern specification1.31E-02
143GO:0009827: plant-type cell wall modification1.31E-02
144GO:0048193: Golgi vesicle transport1.31E-02
145GO:0006997: nucleus organization1.31E-02
146GO:0042545: cell wall modification1.42E-02
147GO:0046685: response to arsenic-containing substance1.49E-02
148GO:0051865: protein autoubiquitination1.49E-02
149GO:0090305: nucleic acid phosphodiester bond hydrolysis1.49E-02
150GO:0000184: nuclear-transcribed mRNA catabolic process, nonsense-mediated decay1.49E-02
151GO:0006783: heme biosynthetic process1.49E-02
152GO:0001708: cell fate specification1.49E-02
153GO:0015780: nucleotide-sugar transport1.49E-02
154GO:0001666: response to hypoxia1.50E-02
155GO:0007165: signal transduction1.55E-02
156GO:0010029: regulation of seed germination1.58E-02
157GO:0006970: response to osmotic stress1.65E-02
158GO:0006779: porphyrin-containing compound biosynthetic process1.67E-02
159GO:0042761: very long-chain fatty acid biosynthetic process1.67E-02
160GO:0010018: far-red light signaling pathway1.67E-02
161GO:0048268: clathrin coat assembly1.67E-02
162GO:0007346: regulation of mitotic cell cycle1.67E-02
163GO:0016573: histone acetylation1.67E-02
164GO:0006979: response to oxidative stress1.72E-02
165GO:0000398: mRNA splicing, via spliceosome1.77E-02
166GO:0010629: negative regulation of gene expression1.87E-02
167GO:0055062: phosphate ion homeostasis1.87E-02
168GO:0006782: protoporphyrinogen IX biosynthetic process1.87E-02
169GO:0019538: protein metabolic process1.87E-02
170GO:0009641: shade avoidance1.87E-02
171GO:0048767: root hair elongation2.06E-02
172GO:0000038: very long-chain fatty acid metabolic process2.07E-02
173GO:0009698: phenylpropanoid metabolic process2.07E-02
174GO:0009682: induced systemic resistance2.07E-02
175GO:0030148: sphingolipid biosynthetic process2.07E-02
176GO:0010015: root morphogenesis2.07E-02
177GO:0010105: negative regulation of ethylene-activated signaling pathway2.28E-02
178GO:0006890: retrograde vesicle-mediated transport, Golgi to ER2.28E-02
179GO:0000266: mitochondrial fission2.28E-02
180GO:0016051: carbohydrate biosynthetic process2.49E-02
181GO:0030048: actin filament-based movement2.50E-02
182GO:2000012: regulation of auxin polar transport2.50E-02
183GO:0050826: response to freezing2.50E-02
184GO:0018107: peptidyl-threonine phosphorylation2.50E-02
185GO:0005986: sucrose biosynthetic process2.50E-02
186GO:0006633: fatty acid biosynthetic process2.62E-02
187GO:0048467: gynoecium development2.73E-02
188GO:0034605: cellular response to heat2.73E-02
189GO:0002237: response to molecule of bacterial origin2.73E-02
190GO:0009969: xyloglucan biosynthetic process2.96E-02
191GO:0006631: fatty acid metabolic process2.96E-02
192GO:0080188: RNA-directed DNA methylation2.96E-02
193GO:0071732: cellular response to nitric oxide2.96E-02
194GO:0010030: positive regulation of seed germination2.96E-02
195GO:0042753: positive regulation of circadian rhythm3.20E-02
196GO:0006636: unsaturated fatty acid biosynthetic process3.20E-02
197GO:0009833: plant-type primary cell wall biogenesis3.20E-02
198GO:0051707: response to other organism3.21E-02
199GO:0035556: intracellular signal transduction3.40E-02
200GO:0009863: salicylic acid mediated signaling pathway3.44E-02
201GO:0010187: negative regulation of seed germination3.44E-02
202GO:2000377: regulation of reactive oxygen species metabolic process3.44E-02
203GO:0009644: response to high light intensity3.47E-02
204GO:0010468: regulation of gene expression3.66E-02
205GO:0009617: response to bacterium3.66E-02
206GO:0009695: jasmonic acid biosynthetic process3.69E-02
207GO:0043622: cortical microtubule organization3.69E-02
208GO:0006855: drug transmembrane transport3.74E-02
209GO:0048364: root development3.86E-02
210GO:0009269: response to desiccation3.95E-02
211GO:0051321: meiotic cell cycle3.95E-02
212GO:0010431: seed maturation3.95E-02
213GO:0042742: defense response to bacterium4.16E-02
214GO:0071555: cell wall organization4.16E-02
215GO:0030245: cellulose catabolic process4.21E-02
216GO:0080092: regulation of pollen tube growth4.21E-02
217GO:0071456: cellular response to hypoxia4.21E-02
218GO:0006364: rRNA processing4.31E-02
219GO:0071215: cellular response to abscisic acid stimulus4.48E-02
220GO:0071369: cellular response to ethylene stimulus4.48E-02
221GO:0055085: transmembrane transport4.60E-02
222GO:0010584: pollen exine formation4.75E-02
223GO:0048443: stamen development4.75E-02
224GO:0009651: response to salt stress4.75E-02
225GO:0010089: xylem development4.75E-02
RankGO TermAdjusted P value
1GO:0008419: RNA lariat debranching enzyme activity0.00E+00
2GO:0004698: calcium-dependent protein kinase C activity0.00E+00
3GO:0017048: Rho GTPase binding0.00E+00
4GO:0042171: lysophosphatidic acid acyltransferase activity0.00E+00
5GO:0016756: glutathione gamma-glutamylcysteinyltransferase activity1.04E-06
6GO:0003700: transcription factor activity, sequence-specific DNA binding2.12E-06
7GO:0016629: 12-oxophytodienoate reductase activity1.64E-05
8GO:0044212: transcription regulatory region DNA binding2.23E-05
9GO:0003840: gamma-glutamyltransferase activity5.42E-05
10GO:0036374: glutathione hydrolase activity5.42E-05
11GO:0043565: sequence-specific DNA binding5.53E-05
12GO:0003883: CTP synthase activity1.14E-04
13GO:0009922: fatty acid elongase activity2.95E-04
14GO:0015297: antiporter activity4.03E-04
15GO:0016301: kinase activity4.63E-04
16GO:0090422: thiamine pyrophosphate transporter activity6.16E-04
17GO:0004105: choline-phosphate cytidylyltransferase activity6.16E-04
18GO:0046870: cadmium ion binding6.16E-04
19GO:0052638: indole-3-butyrate beta-glucosyltransferase activity6.16E-04
20GO:0004348: glucosylceramidase activity6.16E-04
21GO:0071992: phytochelatin transmembrane transporter activity6.16E-04
22GO:0015446: ATPase-coupled arsenite transmembrane transporter activity6.16E-04
23GO:0052895: N1-acetylspermine:oxygen oxidoreductase (N1-acetylspermidine-forming) activity6.16E-04
24GO:0090440: abscisic acid transporter activity6.16E-04
25GO:0052894: norspermine:oxygen oxidoreductase activity6.16E-04
26GO:0010181: FMN binding1.26E-03
27GO:0046509: 1,2-diacylglycerol 3-beta-galactosyltransferase activity1.32E-03
28GO:0008479: queuine tRNA-ribosyltransferase activity1.32E-03
29GO:0045140: inositol phosphoceramide synthase activity1.32E-03
30GO:1901677: phosphate transmembrane transporter activity1.32E-03
31GO:0015117: thiosulfate transmembrane transporter activity1.32E-03
32GO:0017022: myosin binding1.32E-03
33GO:0004103: choline kinase activity1.32E-03
34GO:0008883: glutamyl-tRNA reductase activity1.32E-03
35GO:0001047: core promoter binding1.32E-03
36GO:0042389: omega-3 fatty acid desaturase activity1.32E-03
37GO:0017040: ceramidase activity1.32E-03
38GO:0003839: gamma-glutamylcyclotransferase activity1.32E-03
39GO:0003958: NADPH-hemoprotein reductase activity1.32E-03
40GO:0052901: spermine:oxygen oxidoreductase (spermidine-forming) activity1.32E-03
41GO:0004675: transmembrane receptor protein serine/threonine kinase activity1.65E-03
42GO:0004702: signal transducer, downstream of receptor, with serine/threonine kinase activity2.09E-03
43GO:0047274: galactinol-sucrose galactosyltransferase activity2.18E-03
44GO:0010295: (+)-abscisic acid 8'-hydroxylase activity2.18E-03
45GO:0005310: dicarboxylic acid transmembrane transporter activity2.18E-03
46GO:0015141: succinate transmembrane transporter activity2.18E-03
47GO:0052726: inositol-1,3,4-trisphosphate 5-kinase activity2.18E-03
48GO:0004383: guanylate cyclase activity2.18E-03
49GO:0005457: GDP-fucose transmembrane transporter activity2.18E-03
50GO:0047325: inositol tetrakisphosphate 1-kinase activity2.18E-03
51GO:0046592: polyamine oxidase activity2.18E-03
52GO:0019888: protein phosphatase regulator activity2.64E-03
53GO:0008083: growth factor activity2.98E-03
54GO:0015131: oxaloacetate transmembrane transporter activity3.17E-03
55GO:0001653: peptide receptor activity3.17E-03
56GO:0033843: xyloglucan 6-xylosyltransferase activity3.17E-03
57GO:0035250: UDP-galactosyltransferase activity3.17E-03
58GO:0048487: beta-tubulin binding3.17E-03
59GO:0005460: UDP-glucose transmembrane transporter activity3.17E-03
60GO:0005432: calcium:sodium antiporter activity3.17E-03
61GO:0052725: inositol-1,3,4-trisphosphate 6-kinase activity3.17E-03
62GO:0004674: protein serine/threonine kinase activity3.55E-03
63GO:0005096: GTPase activator activity3.63E-03
64GO:0102336: 3-oxo-arachidoyl-CoA synthase activity3.73E-03
65GO:0102337: 3-oxo-cerotoyl-CoA synthase activity3.73E-03
66GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity3.73E-03
67GO:0000062: fatty-acyl-CoA binding4.28E-03
68GO:0003841: 1-acylglycerol-3-phosphate O-acyltransferase activity4.28E-03
69GO:0016758: transferase activity, transferring hexosyl groups4.47E-03
70GO:0003677: DNA binding5.25E-03
71GO:0010294: abscisic acid glucosyltransferase activity5.49E-03
72GO:0005459: UDP-galactose transmembrane transporter activity5.49E-03
73GO:0019139: cytokinin dehydrogenase activity5.49E-03
74GO:0004623: phospholipase A2 activity5.49E-03
75GO:0080122: AMP transmembrane transporter activity5.49E-03
76GO:0070696: transmembrane receptor protein serine/threonine kinase binding5.49E-03
77GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity5.52E-03
78GO:0008514: organic anion transmembrane transporter activity6.56E-03
79GO:0019137: thioglucosidase activity6.81E-03
80GO:0005347: ATP transmembrane transporter activity8.24E-03
81GO:0051020: GTPase binding8.24E-03
82GO:0015217: ADP transmembrane transporter activity8.24E-03
83GO:0005516: calmodulin binding9.01E-03
84GO:0004722: protein serine/threonine phosphatase activity9.54E-03
85GO:0016621: cinnamoyl-CoA reductase activity9.76E-03
86GO:0015140: malate transmembrane transporter activity9.76E-03
87GO:0004143: diacylglycerol kinase activity9.76E-03
88GO:0045330: aspartyl esterase activity1.07E-02
89GO:0015491: cation:cation antiporter activity1.14E-02
90GO:0016209: antioxidant activity1.14E-02
91GO:0080044: quercetin 7-O-glucosyltransferase activity1.31E-02
92GO:0008308: voltage-gated anion channel activity1.31E-02
93GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water1.31E-02
94GO:0080043: quercetin 3-O-glucosyltransferase activity1.31E-02
95GO:0030599: pectinesterase activity1.37E-02
96GO:0004842: ubiquitin-protein transferase activity1.38E-02
97GO:0000989: transcription factor activity, transcription factor binding1.49E-02
98GO:0102483: scopolin beta-glucosidase activity1.77E-02
99GO:0004004: ATP-dependent RNA helicase activity1.77E-02
100GO:0008757: S-adenosylmethionine-dependent methyltransferase activity1.86E-02
101GO:0004713: protein tyrosine kinase activity1.87E-02
102GO:0016308: 1-phosphatidylinositol-4-phosphate 5-kinase activity1.87E-02
103GO:0005545: 1-phosphatidylinositol binding1.87E-02
104GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds1.88E-02
105GO:0015238: drug transmembrane transporter activity2.06E-02
106GO:0005524: ATP binding2.16E-02
107GO:0015116: sulfate transmembrane transporter activity2.28E-02
108GO:0015114: phosphate ion transmembrane transporter activity2.50E-02
109GO:0005388: calcium-transporting ATPase activity2.50E-02
110GO:0000175: 3'-5'-exoribonuclease activity2.50E-02
111GO:0005315: inorganic phosphate transmembrane transporter activity2.50E-02
112GO:0005262: calcium channel activity2.50E-02
113GO:0008422: beta-glucosidase activity2.72E-02
114GO:0008131: primary amine oxidase activity2.73E-02
115GO:0042973: glucan endo-1,3-beta-D-glucosidase activity2.73E-02
116GO:0003774: motor activity2.73E-02
117GO:0046872: metal ion binding2.84E-02
118GO:0017025: TBP-class protein binding2.96E-02
119GO:0003712: transcription cofactor activity2.96E-02
120GO:0008146: sulfotransferase activity2.96E-02
121GO:0008194: UDP-glycosyltransferase activity3.38E-02
122GO:0004857: enzyme inhibitor activity3.44E-02
123GO:0035251: UDP-glucosyltransferase activity3.95E-02
124GO:0004540: ribonuclease activity3.95E-02
125GO:0004707: MAP kinase activity3.95E-02
126GO:0030570: pectate lyase activity4.48E-02
RankGO TermAdjusted P value
1GO:0070382: exocytic vesicle6.16E-04
2GO:0005634: nucleus1.13E-03
3GO:0031357: integral component of chloroplast inner membrane1.32E-03
4GO:0042170: plastid membrane1.32E-03
5GO:0030133: transport vesicle1.32E-03
6GO:0000159: protein phosphatase type 2A complex2.02E-03
7GO:0005652: nuclear lamina2.18E-03
8GO:0046658: anchored component of plasma membrane3.08E-03
9GO:0045177: apical part of cell3.17E-03
10GO:0000178: exosome (RNase complex)5.49E-03
11GO:0000793: condensed chromosome6.81E-03
12GO:0031463: Cul3-RING ubiquitin ligase complex6.81E-03
13GO:0000794: condensed nuclear chromosome9.76E-03
14GO:0034399: nuclear periphery1.14E-02
15GO:0005768: endosome1.35E-02
16GO:0016604: nuclear body1.67E-02
17GO:0015030: Cajal body1.67E-02
18GO:0005938: cell cortex2.50E-02
19GO:0031225: anchored component of membrane2.58E-02
20GO:0005802: trans-Golgi network2.71E-02
21GO:0031902: late endosome membrane2.96E-02
22GO:0000139: Golgi membrane3.15E-02
23GO:0005743: mitochondrial inner membrane3.26E-02
24GO:0005622: intracellular3.28E-02
25GO:0005615: extracellular space3.38E-02
26GO:0005905: clathrin-coated pit3.95E-02
27GO:0043231: intracellular membrane-bounded organelle4.18E-02
<
Gene type



Gene DE type