GO Enrichment Analysis of Co-expressed Genes with
AT4G29070
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0098586: cellular response to virus | 0.00E+00 |
| 2 | GO:0033231: carbohydrate export | 0.00E+00 |
| 3 | GO:0017009: protein-phycocyanobilin linkage | 0.00E+00 |
| 4 | GO:0042304: regulation of fatty acid biosynthetic process | 0.00E+00 |
| 5 | GO:1901965: endoplasmic reticulum to chloroplast transport | 0.00E+00 |
| 6 | GO:0009661: chromoplast organization | 0.00E+00 |
| 7 | GO:2000013: regulation of arginine biosynthetic process via ornithine | 0.00E+00 |
| 8 | GO:0009658: chloroplast organization | 1.48E-08 |
| 9 | GO:0080005: photosystem stoichiometry adjustment | 2.51E-06 |
| 10 | GO:0006013: mannose metabolic process | 9.11E-06 |
| 11 | GO:0016120: carotene biosynthetic process | 6.05E-05 |
| 12 | GO:0010190: cytochrome b6f complex assembly | 8.88E-05 |
| 13 | GO:0048564: photosystem I assembly | 2.06E-04 |
| 14 | GO:1902334: fructose export from vacuole to cytoplasm | 2.32E-04 |
| 15 | GO:0010362: negative regulation of anion channel activity by blue light | 2.32E-04 |
| 16 | GO:0015755: fructose transport | 2.32E-04 |
| 17 | GO:1904966: positive regulation of vitamin E biosynthetic process | 2.32E-04 |
| 18 | GO:1990052: ER to chloroplast lipid transport | 2.32E-04 |
| 19 | GO:0071806: protein transmembrane transport | 2.32E-04 |
| 20 | GO:1904964: positive regulation of phytol biosynthetic process | 2.32E-04 |
| 21 | GO:0042371: vitamin K biosynthetic process | 2.32E-04 |
| 22 | GO:0071461: cellular response to redox state | 2.32E-04 |
| 23 | GO:0006436: tryptophanyl-tRNA aminoacylation | 2.32E-04 |
| 24 | GO:0006430: lysyl-tRNA aminoacylation | 2.32E-04 |
| 25 | GO:0080065: 4-alpha-methyl-delta7-sterol oxidation | 2.32E-04 |
| 26 | GO:0046741: transport of virus in host, tissue to tissue | 5.15E-04 |
| 27 | GO:1902326: positive regulation of chlorophyll biosynthetic process | 5.15E-04 |
| 28 | GO:0034755: iron ion transmembrane transport | 5.15E-04 |
| 29 | GO:0048314: embryo sac morphogenesis | 5.15E-04 |
| 30 | GO:0000256: allantoin catabolic process | 5.15E-04 |
| 31 | GO:1904143: positive regulation of carotenoid biosynthetic process | 5.15E-04 |
| 32 | GO:0080183: response to photooxidative stress | 5.15E-04 |
| 33 | GO:0080185: effector dependent induction by symbiont of host immune response | 5.15E-04 |
| 34 | GO:0018298: protein-chromophore linkage | 5.47E-04 |
| 35 | GO:0009767: photosynthetic electron transport chain | 6.45E-04 |
| 36 | GO:0010136: ureide catabolic process | 8.37E-04 |
| 37 | GO:0009150: purine ribonucleotide metabolic process | 8.37E-04 |
| 38 | GO:0051604: protein maturation | 8.37E-04 |
| 39 | GO:0006696: ergosterol biosynthetic process | 8.37E-04 |
| 40 | GO:0006418: tRNA aminoacylation for protein translation | 1.09E-03 |
| 41 | GO:0009644: response to high light intensity | 1.12E-03 |
| 42 | GO:0006145: purine nucleobase catabolic process | 1.19E-03 |
| 43 | GO:0043572: plastid fission | 1.19E-03 |
| 44 | GO:2001141: regulation of RNA biosynthetic process | 1.19E-03 |
| 45 | GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly | 1.19E-03 |
| 46 | GO:0071484: cellular response to light intensity | 1.19E-03 |
| 47 | GO:0016226: iron-sulfur cluster assembly | 1.31E-03 |
| 48 | GO:0042274: ribosomal small subunit biogenesis | 1.59E-03 |
| 49 | GO:0009765: photosynthesis, light harvesting | 1.59E-03 |
| 50 | GO:0009902: chloroplast relocation | 1.59E-03 |
| 51 | GO:0010021: amylopectin biosynthetic process | 1.59E-03 |
| 52 | GO:0006808: regulation of nitrogen utilization | 1.59E-03 |
| 53 | GO:0016117: carotenoid biosynthetic process | 1.67E-03 |
| 54 | GO:0010117: photoprotection | 2.03E-03 |
| 55 | GO:0045038: protein import into chloroplast thylakoid membrane | 2.03E-03 |
| 56 | GO:0035434: copper ion transmembrane transport | 2.03E-03 |
| 57 | GO:0016123: xanthophyll biosynthetic process | 2.03E-03 |
| 58 | GO:0006555: methionine metabolic process | 2.50E-03 |
| 59 | GO:0055114: oxidation-reduction process | 2.50E-03 |
| 60 | GO:0019509: L-methionine salvage from methylthioadenosine | 3.00E-03 |
| 61 | GO:0010019: chloroplast-nucleus signaling pathway | 3.00E-03 |
| 62 | GO:0048528: post-embryonic root development | 3.54E-03 |
| 63 | GO:1900056: negative regulation of leaf senescence | 3.54E-03 |
| 64 | GO:0010038: response to metal ion | 3.54E-03 |
| 65 | GO:0015995: chlorophyll biosynthetic process | 4.07E-03 |
| 66 | GO:0006605: protein targeting | 4.10E-03 |
| 67 | GO:0009704: de-etiolation | 4.10E-03 |
| 68 | GO:0050821: protein stabilization | 4.10E-03 |
| 69 | GO:0006102: isocitrate metabolic process | 4.10E-03 |
| 70 | GO:0048481: plant ovule development | 4.50E-03 |
| 71 | GO:0007623: circadian rhythm | 4.59E-03 |
| 72 | GO:0071482: cellular response to light stimulus | 4.70E-03 |
| 73 | GO:0019430: removal of superoxide radicals | 4.70E-03 |
| 74 | GO:0032544: plastid translation | 4.70E-03 |
| 75 | GO:0006811: ion transport | 4.97E-03 |
| 76 | GO:0010043: response to zinc ion | 5.21E-03 |
| 77 | GO:0007568: aging | 5.21E-03 |
| 78 | GO:0009821: alkaloid biosynthetic process | 5.32E-03 |
| 79 | GO:0000373: Group II intron splicing | 5.32E-03 |
| 80 | GO:0009638: phototropism | 5.97E-03 |
| 81 | GO:0010380: regulation of chlorophyll biosynthetic process | 5.97E-03 |
| 82 | GO:1900426: positive regulation of defense response to bacterium | 5.97E-03 |
| 83 | GO:0006995: cellular response to nitrogen starvation | 6.65E-03 |
| 84 | GO:0045036: protein targeting to chloroplast | 6.65E-03 |
| 85 | GO:0006259: DNA metabolic process | 6.65E-03 |
| 86 | GO:0009773: photosynthetic electron transport in photosystem I | 7.35E-03 |
| 87 | GO:0006265: DNA topological change | 7.35E-03 |
| 88 | GO:0043085: positive regulation of catalytic activity | 7.35E-03 |
| 89 | GO:1903507: negative regulation of nucleic acid-templated transcription | 7.35E-03 |
| 90 | GO:0006879: cellular iron ion homeostasis | 7.35E-03 |
| 91 | GO:0006352: DNA-templated transcription, initiation | 7.35E-03 |
| 92 | GO:0009750: response to fructose | 7.35E-03 |
| 93 | GO:0006508: proteolysis | 8.01E-03 |
| 94 | GO:0006790: sulfur compound metabolic process | 8.08E-03 |
| 95 | GO:0005986: sucrose biosynthetic process | 8.84E-03 |
| 96 | GO:0006807: nitrogen compound metabolic process | 8.84E-03 |
| 97 | GO:0009718: anthocyanin-containing compound biosynthetic process | 8.84E-03 |
| 98 | GO:0031347: regulation of defense response | 8.91E-03 |
| 99 | GO:0010020: chloroplast fission | 9.62E-03 |
| 100 | GO:0010207: photosystem II assembly | 9.62E-03 |
| 101 | GO:0090351: seedling development | 1.04E-02 |
| 102 | GO:0006071: glycerol metabolic process | 1.13E-02 |
| 103 | GO:0015979: photosynthesis | 1.25E-02 |
| 104 | GO:0051302: regulation of cell division | 1.30E-02 |
| 105 | GO:0007017: microtubule-based process | 1.30E-02 |
| 106 | GO:0006825: copper ion transport | 1.30E-02 |
| 107 | GO:0051321: meiotic cell cycle | 1.39E-02 |
| 108 | GO:0006366: transcription from RNA polymerase II promoter | 1.39E-02 |
| 109 | GO:0016998: cell wall macromolecule catabolic process | 1.39E-02 |
| 110 | GO:0051260: protein homooligomerization | 1.39E-02 |
| 111 | GO:2000022: regulation of jasmonic acid mediated signaling pathway | 1.48E-02 |
| 112 | GO:0006817: phosphate ion transport | 1.67E-02 |
| 113 | GO:0070417: cellular response to cold | 1.77E-02 |
| 114 | GO:0046686: response to cadmium ion | 1.81E-02 |
| 115 | GO:0042335: cuticle development | 1.87E-02 |
| 116 | GO:0010118: stomatal movement | 1.87E-02 |
| 117 | GO:0006662: glycerol ether metabolic process | 1.97E-02 |
| 118 | GO:0009646: response to absence of light | 2.07E-02 |
| 119 | GO:0007059: chromosome segregation | 2.07E-02 |
| 120 | GO:0009791: post-embryonic development | 2.18E-02 |
| 121 | GO:0019252: starch biosynthetic process | 2.18E-02 |
| 122 | GO:0000302: response to reactive oxygen species | 2.29E-02 |
| 123 | GO:0030163: protein catabolic process | 2.51E-02 |
| 124 | GO:0010286: heat acclimation | 2.74E-02 |
| 125 | GO:0016126: sterol biosynthetic process | 2.98E-02 |
| 126 | GO:0010027: thylakoid membrane organization | 2.98E-02 |
| 127 | GO:0009816: defense response to bacterium, incompatible interaction | 3.10E-02 |
| 128 | GO:0006950: response to stress | 3.34E-02 |
| 129 | GO:0000160: phosphorelay signal transduction system | 3.72E-02 |
| 130 | GO:0009910: negative regulation of flower development | 3.98E-02 |
| 131 | GO:0000724: double-strand break repair via homologous recombination | 4.12E-02 |
| 132 | GO:0009853: photorespiration | 4.25E-02 |
| 133 | GO:0009637: response to blue light | 4.25E-02 |
| 134 | GO:0006099: tricarboxylic acid cycle | 4.39E-02 |
| 135 | GO:0034599: cellular response to oxidative stress | 4.39E-02 |
| 136 | GO:0006457: protein folding | 4.85E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0010307: acetylglutamate kinase regulator activity | 0.00E+00 |
| 2 | GO:0009673: low-affinity phosphate transmembrane transporter activity | 0.00E+00 |
| 3 | GO:0045435: lycopene epsilon cyclase activity | 0.00E+00 |
| 4 | GO:0046905: phytoene synthase activity | 0.00E+00 |
| 5 | GO:0008935: 1,4-dihydroxy-2-naphthoyl-CoA synthase activity | 0.00E+00 |
| 6 | GO:0015284: fructose uniporter activity | 0.00E+00 |
| 7 | GO:0035798: 2-alkenal reductase (NADP+) activity | 0.00E+00 |
| 8 | GO:0016767: geranylgeranyl-diphosphate geranylgeranyltransferase activity | 0.00E+00 |
| 9 | GO:0004180: carboxypeptidase activity | 9.11E-06 |
| 10 | GO:0048038: quinone binding | 1.30E-05 |
| 11 | GO:0016851: magnesium chelatase activity | 2.08E-05 |
| 12 | GO:0016491: oxidoreductase activity | 8.74E-05 |
| 13 | GO:0004559: alpha-mannosidase activity | 1.23E-04 |
| 14 | GO:0019899: enzyme binding | 1.62E-04 |
| 15 | GO:0046906: tetrapyrrole binding | 2.32E-04 |
| 16 | GO:0004824: lysine-tRNA ligase activity | 2.32E-04 |
| 17 | GO:0051996: squalene synthase activity | 2.32E-04 |
| 18 | GO:0016783: sulfurtransferase activity | 2.32E-04 |
| 19 | GO:0004830: tryptophan-tRNA ligase activity | 2.32E-04 |
| 20 | GO:0030941: chloroplast targeting sequence binding | 2.32E-04 |
| 21 | GO:0016784: 3-mercaptopyruvate sulfurtransferase activity | 2.32E-04 |
| 22 | GO:0035671: enone reductase activity | 2.32E-04 |
| 23 | GO:0008236: serine-type peptidase activity | 5.13E-04 |
| 24 | GO:0004047: aminomethyltransferase activity | 5.15E-04 |
| 25 | GO:0033201: alpha-1,4-glucan synthase activity | 5.15E-04 |
| 26 | GO:0004046: aminoacylase activity | 5.15E-04 |
| 27 | GO:0005353: fructose transmembrane transporter activity | 5.15E-04 |
| 28 | GO:0004450: isocitrate dehydrogenase (NADP+) activity | 5.15E-04 |
| 29 | GO:0004310: farnesyl-diphosphate farnesyltransferase activity | 5.15E-04 |
| 30 | GO:0010309: acireductone dioxygenase [iron(II)-requiring] activity | 8.37E-04 |
| 31 | GO:0004373: glycogen (starch) synthase activity | 8.37E-04 |
| 32 | GO:0003913: DNA photolyase activity | 8.37E-04 |
| 33 | GO:0032947: protein complex scaffold | 8.37E-04 |
| 34 | GO:0004848: ureidoglycolate hydrolase activity | 8.37E-04 |
| 35 | GO:0004148: dihydrolipoyl dehydrogenase activity | 8.37E-04 |
| 36 | GO:0003955: NAD(P)H dehydrogenase (quinone) activity | 8.37E-04 |
| 37 | GO:0050307: sucrose-phosphate phosphatase activity | 8.37E-04 |
| 38 | GO:0000254: C-4 methylsterol oxidase activity | 1.19E-03 |
| 39 | GO:0004792: thiosulfate sulfurtransferase activity | 1.19E-03 |
| 40 | GO:0009882: blue light photoreceptor activity | 1.19E-03 |
| 41 | GO:0047627: adenylylsulfatase activity | 1.19E-03 |
| 42 | GO:0022891: substrate-specific transmembrane transporter activity | 1.42E-03 |
| 43 | GO:0051861: glycolipid binding | 1.59E-03 |
| 44 | GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor | 1.59E-03 |
| 45 | GO:0016987: sigma factor activity | 1.59E-03 |
| 46 | GO:0043495: protein anchor | 1.59E-03 |
| 47 | GO:0009011: starch synthase activity | 1.59E-03 |
| 48 | GO:0001053: plastid sigma factor activity | 1.59E-03 |
| 49 | GO:0005319: lipid transporter activity | 1.59E-03 |
| 50 | GO:0004812: aminoacyl-tRNA ligase activity | 1.67E-03 |
| 51 | GO:0008080: N-acetyltransferase activity | 1.95E-03 |
| 52 | GO:0000293: ferric-chelate reductase activity | 2.50E-03 |
| 53 | GO:0004784: superoxide dismutase activity | 2.50E-03 |
| 54 | GO:0008237: metallopeptidase activity | 3.08E-03 |
| 55 | GO:0016168: chlorophyll binding | 3.65E-03 |
| 56 | GO:0005375: copper ion transmembrane transporter activity | 4.70E-03 |
| 57 | GO:0003918: DNA topoisomerase type II (ATP-hydrolyzing) activity | 4.70E-03 |
| 58 | GO:0008889: glycerophosphodiester phosphodiesterase activity | 5.32E-03 |
| 59 | GO:0071949: FAD binding | 5.32E-03 |
| 60 | GO:0005381: iron ion transmembrane transporter activity | 5.97E-03 |
| 61 | GO:0045309: protein phosphorylated amino acid binding | 5.97E-03 |
| 62 | GO:0016844: strictosidine synthase activity | 5.97E-03 |
| 63 | GO:0042802: identical protein binding | 6.23E-03 |
| 64 | GO:0004129: cytochrome-c oxidase activity | 7.35E-03 |
| 65 | GO:0019904: protein domain specific binding | 7.35E-03 |
| 66 | GO:0000287: magnesium ion binding | 7.81E-03 |
| 67 | GO:0005315: inorganic phosphate transmembrane transporter activity | 8.84E-03 |
| 68 | GO:0031072: heat shock protein binding | 8.84E-03 |
| 69 | GO:0000155: phosphorelay sensor kinase activity | 8.84E-03 |
| 70 | GO:0008233: peptidase activity | 1.03E-02 |
| 71 | GO:0051119: sugar transmembrane transporter activity | 1.04E-02 |
| 72 | GO:0001046: core promoter sequence-specific DNA binding | 1.21E-02 |
| 73 | GO:0003714: transcription corepressor activity | 1.21E-02 |
| 74 | GO:0051536: iron-sulfur cluster binding | 1.21E-02 |
| 75 | GO:0004176: ATP-dependent peptidase activity | 1.39E-02 |
| 76 | GO:0003924: GTPase activity | 1.73E-02 |
| 77 | GO:0047134: protein-disulfide reductase activity | 1.77E-02 |
| 78 | GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen | 1.83E-02 |
| 79 | GO:0004791: thioredoxin-disulfide reductase activity | 2.07E-02 |
| 80 | GO:0016853: isomerase activity | 2.07E-02 |
| 81 | GO:0010181: FMN binding | 2.07E-02 |
| 82 | GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor | 2.51E-02 |
| 83 | GO:0005515: protein binding | 2.62E-02 |
| 84 | GO:0005506: iron ion binding | 2.69E-02 |
| 85 | GO:0008483: transaminase activity | 2.74E-02 |
| 86 | GO:0004222: metalloendopeptidase activity | 3.85E-02 |
| 87 | GO:0001228: transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding | 3.98E-02 |
| 88 | GO:0050897: cobalt ion binding | 3.98E-02 |
| 89 | GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors | 4.25E-02 |
| 90 | GO:0061630: ubiquitin protein ligase activity | 4.93E-02 |
| 91 | GO:0004364: glutathione transferase activity | 4.95E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0009507: chloroplast | 3.35E-31 |
| 2 | GO:0009535: chloroplast thylakoid membrane | 1.02E-13 |
| 3 | GO:0031969: chloroplast membrane | 7.64E-06 |
| 4 | GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone) | 8.44E-06 |
| 5 | GO:0009941: chloroplast envelope | 1.17E-04 |
| 6 | GO:0009534: chloroplast thylakoid | 2.10E-04 |
| 7 | GO:0031972: chloroplast intermembrane space | 2.32E-04 |
| 8 | GO:0009536: plastid | 3.06E-04 |
| 9 | GO:0080085: signal recognition particle, chloroplast targeting | 5.15E-04 |
| 10 | GO:0009707: chloroplast outer membrane | 5.47E-04 |
| 11 | GO:0009528: plastid inner membrane | 8.37E-04 |
| 12 | GO:0010007: magnesium chelatase complex | 8.37E-04 |
| 13 | GO:0009570: chloroplast stroma | 1.03E-03 |
| 14 | GO:0030286: dynein complex | 1.59E-03 |
| 15 | GO:0009330: DNA topoisomerase complex (ATP-hydrolyzing) | 1.59E-03 |
| 16 | GO:0009526: plastid envelope | 1.59E-03 |
| 17 | GO:0055035: plastid thylakoid membrane | 2.03E-03 |
| 18 | GO:0009523: photosystem II | 2.24E-03 |
| 19 | GO:0005623: cell | 3.15E-03 |
| 20 | GO:0031359: integral component of chloroplast outer membrane | 3.54E-03 |
| 21 | GO:0009501: amyloplast | 4.10E-03 |
| 22 | GO:0005786: signal recognition particle, endoplasmic reticulum targeting | 4.70E-03 |
| 23 | GO:0031966: mitochondrial membrane | 9.24E-03 |
| 24 | GO:0005773: vacuole | 1.02E-02 |
| 25 | GO:0005875: microtubule associated complex | 1.13E-02 |
| 26 | GO:0005777: peroxisome | 1.18E-02 |
| 27 | GO:0005747: mitochondrial respiratory chain complex I | 1.21E-02 |
| 28 | GO:0042651: thylakoid membrane | 1.30E-02 |
| 29 | GO:0045271: respiratory chain complex I | 1.30E-02 |
| 30 | GO:0009706: chloroplast inner membrane | 1.42E-02 |
| 31 | GO:0005739: mitochondrion | 1.48E-02 |
| 32 | GO:0010287: plastoglobule | 1.68E-02 |
| 33 | GO:0016021: integral component of membrane | 1.78E-02 |
| 34 | GO:0005759: mitochondrial matrix | 2.23E-02 |
| 35 | GO:0010319: stromule | 2.74E-02 |
| 36 | GO:0009295: nucleoid | 2.74E-02 |
| 37 | GO:0005778: peroxisomal membrane | 2.74E-02 |
| 38 | GO:0031977: thylakoid lumen | 4.81E-02 |