GO Enrichment Analysis of Co-expressed Genes with
AT4G29040
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0006489: dolichyl diphosphate biosynthetic process | 0.00E+00 |
| 2 | GO:0006511: ubiquitin-dependent protein catabolic process | 3.12E-35 |
| 3 | GO:0030163: protein catabolic process | 2.36E-12 |
| 4 | GO:0051603: proteolysis involved in cellular protein catabolic process | 2.05E-10 |
| 5 | GO:0042176: regulation of protein catabolic process | 7.84E-09 |
| 6 | GO:0010043: response to zinc ion | 2.30E-07 |
| 7 | GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process | 2.43E-07 |
| 8 | GO:0034976: response to endoplasmic reticulum stress | 6.09E-07 |
| 9 | GO:0006457: protein folding | 1.21E-06 |
| 10 | GO:0045899: positive regulation of RNA polymerase II transcriptional preinitiation complex assembly | 3.53E-06 |
| 11 | GO:0051788: response to misfolded protein | 8.18E-05 |
| 12 | GO:0006435: threonyl-tRNA aminoacylation | 8.18E-05 |
| 13 | GO:0030433: ubiquitin-dependent ERAD pathway | 9.26E-05 |
| 14 | GO:0055074: calcium ion homeostasis | 1.42E-04 |
| 15 | GO:0046686: response to cadmium ion | 1.54E-04 |
| 16 | GO:0009647: skotomorphogenesis | 2.11E-04 |
| 17 | GO:0001676: long-chain fatty acid metabolic process | 2.11E-04 |
| 18 | GO:0010363: regulation of plant-type hypersensitive response | 2.85E-04 |
| 19 | GO:0036065: fucosylation | 3.65E-04 |
| 20 | GO:0045087: innate immune response | 4.41E-04 |
| 21 | GO:0043248: proteasome assembly | 4.48E-04 |
| 22 | GO:0045454: cell redox homeostasis | 4.73E-04 |
| 23 | GO:0048528: post-embryonic root development | 6.27E-04 |
| 24 | GO:0031540: regulation of anthocyanin biosynthetic process | 7.22E-04 |
| 25 | GO:0046685: response to arsenic-containing substance | 9.20E-04 |
| 26 | GO:0043067: regulation of programmed cell death | 1.02E-03 |
| 27 | GO:0009969: xyloglucan biosynthetic process | 1.72E-03 |
| 28 | GO:0009793: embryo development ending in seed dormancy | 1.74E-03 |
| 29 | GO:0006487: protein N-linked glycosylation | 1.99E-03 |
| 30 | GO:0015992: proton transport | 2.26E-03 |
| 31 | GO:0042147: retrograde transport, endosome to Golgi | 2.84E-03 |
| 32 | GO:0000413: protein peptidyl-prolyl isomerization | 3.00E-03 |
| 33 | GO:0009651: response to salt stress | 3.06E-03 |
| 34 | GO:0048868: pollen tube development | 3.15E-03 |
| 35 | GO:0048825: cotyledon development | 3.47E-03 |
| 36 | GO:0010193: response to ozone | 3.63E-03 |
| 37 | GO:0009567: double fertilization forming a zygote and endosperm | 4.14E-03 |
| 38 | GO:0009817: defense response to fungus, incompatible interaction | 5.60E-03 |
| 39 | GO:0009832: plant-type cell wall biogenesis | 5.80E-03 |
| 40 | GO:0007275: multicellular organism development | 7.12E-03 |
| 41 | GO:0006631: fatty acid metabolic process | 7.43E-03 |
| 42 | GO:0009926: auxin polar transport | 7.87E-03 |
| 43 | GO:0009735: response to cytokinin | 8.00E-03 |
| 44 | GO:0009965: leaf morphogenesis | 8.53E-03 |
| 45 | GO:0006812: cation transport | 9.22E-03 |
| 46 | GO:0009809: lignin biosynthetic process | 9.69E-03 |
| 47 | GO:0006486: protein glycosylation | 9.69E-03 |
| 48 | GO:0009736: cytokinin-activated signaling pathway | 9.69E-03 |
| 49 | GO:0048316: seed development | 1.11E-02 |
| 50 | GO:0009553: embryo sac development | 1.22E-02 |
| 51 | GO:0051726: regulation of cell cycle | 1.29E-02 |
| 52 | GO:0009790: embryo development | 1.62E-02 |
| 53 | GO:0048366: leaf development | 2.80E-02 |
| 54 | GO:0016192: vesicle-mediated transport | 3.02E-02 |
| 55 | GO:0006886: intracellular protein transport | 3.38E-02 |
| 56 | GO:0009751: response to salicylic acid | 3.80E-02 |
| 57 | GO:0009408: response to heat | 3.84E-02 |
| 58 | GO:0048364: root development | 3.96E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0004298: threonine-type endopeptidase activity | 4.27E-30 |
| 2 | GO:0008233: peptidase activity | 2.85E-19 |
| 3 | GO:0030234: enzyme regulator activity | 1.45E-07 |
| 4 | GO:0003756: protein disulfide isomerase activity | 1.71E-06 |
| 5 | GO:0036402: proteasome-activating ATPase activity | 3.53E-06 |
| 6 | GO:0010013: N-1-naphthylphthalamic acid binding | 3.25E-05 |
| 7 | GO:0003975: UDP-N-acetylglucosamine-dolichyl-phosphate N-acetylglucosaminephosphotransferase activity | 3.25E-05 |
| 8 | GO:0017025: TBP-class protein binding | 5.21E-05 |
| 9 | GO:0043130: ubiquitin binding | 6.68E-05 |
| 10 | GO:0004829: threonine-tRNA ligase activity | 8.18E-05 |
| 11 | GO:0008963: phospho-N-acetylmuramoyl-pentapeptide-transferase activity | 8.18E-05 |
| 12 | GO:0009678: hydrogen-translocating pyrophosphatase activity | 2.11E-04 |
| 13 | GO:0015368: calcium:cation antiporter activity | 2.85E-04 |
| 14 | GO:0015369: calcium:proton antiporter activity | 2.85E-04 |
| 15 | GO:0031593: polyubiquitin binding | 4.48E-04 |
| 16 | GO:0102391: decanoate--CoA ligase activity | 5.36E-04 |
| 17 | GO:0008107: galactoside 2-alpha-L-fucosyltransferase activity | 6.27E-04 |
| 18 | GO:0004427: inorganic diphosphatase activity | 6.27E-04 |
| 19 | GO:0004467: long-chain fatty acid-CoA ligase activity | 6.27E-04 |
| 20 | GO:0052747: sinapyl alcohol dehydrogenase activity | 7.22E-04 |
| 21 | GO:0015491: cation:cation antiporter activity | 7.22E-04 |
| 22 | GO:0008417: fucosyltransferase activity | 9.20E-04 |
| 23 | GO:0016887: ATPase activity | 1.06E-03 |
| 24 | GO:0004177: aminopeptidase activity | 1.24E-03 |
| 25 | GO:0045551: cinnamyl-alcohol dehydrogenase activity | 1.36E-03 |
| 26 | GO:0004175: endopeptidase activity | 1.60E-03 |
| 27 | GO:0004190: aspartic-type endopeptidase activity | 1.72E-03 |
| 28 | GO:0016853: isomerase activity | 3.31E-03 |
| 29 | GO:0000166: nucleotide binding | 8.75E-03 |
| 30 | GO:0003755: peptidyl-prolyl cis-trans isomerase activity | 8.76E-03 |
| 31 | GO:0051082: unfolded protein binding | 1.24E-02 |
| 32 | GO:0008565: protein transporter activity | 1.65E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0000327: lytic vacuole within protein storage vacuole | 0.00E+00 |
| 2 | GO:0000502: proteasome complex | 1.93E-52 |
| 3 | GO:0005839: proteasome core complex | 4.27E-30 |
| 4 | GO:0019773: proteasome core complex, alpha-subunit complex | 2.95E-16 |
| 5 | GO:0008541: proteasome regulatory particle, lid subcomplex | 4.21E-15 |
| 6 | GO:0005829: cytosol | 6.08E-15 |
| 7 | GO:0031595: nuclear proteasome complex | 4.38E-11 |
| 8 | GO:0008540: proteasome regulatory particle, base subcomplex | 3.41E-10 |
| 9 | GO:0005838: proteasome regulatory particle | 2.79E-07 |
| 10 | GO:0005737: cytoplasm | 6.78E-07 |
| 11 | GO:0031597: cytosolic proteasome complex | 5.15E-06 |
| 12 | GO:0005788: endoplasmic reticulum lumen | 7.95E-06 |
| 13 | GO:0005783: endoplasmic reticulum | 1.10E-04 |
| 14 | GO:0009506: plasmodesma | 1.15E-04 |
| 15 | GO:0005774: vacuolar membrane | 1.21E-04 |
| 16 | GO:0046861: glyoxysomal membrane | 1.42E-04 |
| 17 | GO:0022626: cytosolic ribosome | 1.46E-04 |
| 18 | GO:0030904: retromer complex | 4.48E-04 |
| 19 | GO:0000326: protein storage vacuole | 8.20E-04 |
| 20 | GO:0009514: glyoxysome | 8.20E-04 |
| 21 | GO:0005634: nucleus | 8.46E-04 |
| 22 | GO:0005773: vacuole | 1.43E-03 |
| 23 | GO:0030176: integral component of endoplasmic reticulum membrane | 1.72E-03 |
| 24 | GO:0005886: plasma membrane | 3.14E-03 |
| 25 | GO:0009505: plant-type cell wall | 4.02E-03 |
| 26 | GO:0032580: Golgi cisterna membrane | 4.14E-03 |
| 27 | GO:0005819: spindle | 7.01E-03 |
| 28 | GO:0031902: late endosome membrane | 7.43E-03 |
| 29 | GO:0005623: cell | 1.48E-02 |
| 30 | GO:0009524: phragmoplast | 1.51E-02 |
| 31 | GO:0005618: cell wall | 1.73E-02 |
| 32 | GO:0009705: plant-type vacuole membrane | 1.83E-02 |
| 33 | GO:0080008: Cul4-RING E3 ubiquitin ligase complex | 2.67E-02 |
| 34 | GO:0009507: chloroplast | 2.92E-02 |
| 35 | GO:0005794: Golgi apparatus | 3.78E-02 |