co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT4G28790

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0042430: indole-containing compound metabolic process	0.00E+00
2	GO:1902325: negative regulation of chlorophyll biosynthetic process	0.00E+00
3	GO:0072722: response to amitrole	0.00E+00
4	GO:0006569: tryptophan catabolic process	1.57E-05
5	GO:0000162: tryptophan biosynthetic process	2.03E-05
6	GO:0080183: response to photooxidative stress	4.12E-05
7	GO:0010272: response to silver ion	7.34E-05
8	GO:0055114: oxidation-reduction process	7.46E-05
9	GO:0009615: response to virus	1.03E-04
10	GO:0009627: systemic acquired resistance	1.16E-04
11	GO:0044550: secondary metabolite biosynthetic process	1.22E-04
12	GO:0010411: xyloglucan metabolic process	1.23E-04
13	GO:0009817: defense response to fungus, incompatible interaction	1.37E-04
14	GO:0042546: cell wall biogenesis	2.40E-04
15	GO:0010019: chloroplast-nucleus signaling pathway	2.97E-04
16	GO:0080027: response to herbivore	3.49E-04
17	GO:0030091: protein repair	4.04E-04
18	GO:0010120: camalexin biosynthetic process	4.60E-04
19	GO:0006032: chitin catabolic process	6.38E-04
20	GO:0000272: polysaccharide catabolic process	7.00E-04
21	GO:0009684: indoleacetic acid biosynthetic process	7.00E-04
22	GO:0006913: nucleocytoplasmic transport	7.00E-04
23	GO:0009682: induced systemic resistance	7.00E-04
24	GO:0052544: defense response by callose deposition in cell wall	7.00E-04
25	GO:0071555: cell wall organization	9.65E-04
26	GO:0016998: cell wall macromolecule catabolic process	1.25E-03
27	GO:0071456: cellular response to hypoxia	1.33E-03
28	GO:0010017: red or far-red light signaling pathway	1.33E-03
29	GO:0009625: response to insect	1.40E-03
30	GO:0006885: regulation of pH	1.73E-03
31	GO:0006623: protein targeting to vacuole	1.90E-03
32	GO:0002229: defense response to oomycetes	1.99E-03
33	GO:0019761: glucosinolate biosynthetic process	2.08E-03
34	GO:0009407: toxin catabolic process	3.25E-03
35	GO:0009631: cold acclimation	3.36E-03
36	GO:0034599: cellular response to oxidative stress	3.69E-03
37	GO:0009636: response to toxic substance	4.60E-03
38	GO:0006812: cation transport	4.96E-03
39	GO:0009664: plant-type cell wall organization	4.96E-03
40	GO:0006813: potassium ion transport	5.21E-03
41	GO:0042742: defense response to bacterium	7.19E-03
42	GO:0010150: leaf senescence	9.73E-03
43	GO:0006470: protein dephosphorylation	1.07E-02
44	GO:0009617: response to bacterium	1.10E-02
45	GO:0009723: response to ethylene	1.47E-02
46	GO:0045454: cell redox homeostasis	1.75E-02
47	GO:0045892: negative regulation of transcription, DNA-templated	1.77E-02
48	GO:0009651: response to salt stress	2.42E-02
49	GO:0009735: response to cytokinin	2.87E-02
50	GO:0009414: response to water deprivation	4.97E-02

Rank	GO Term	Adjusted P value
1	GO:0070191: methionine-R-sulfoxide reductase activity	0.00E+00
2	GO:0016709: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen	6.87E-06
3	GO:0046906: tetrapyrrole binding	1.57E-05
4	GO:0004048: anthranilate phosphoribosyltransferase activity	1.57E-05
5	GO:0008061: chitin binding	1.77E-05
6	GO:0020037: heme binding	2.02E-05
7	GO:0005199: structural constituent of cell wall	5.29E-05
8	GO:0019825: oxygen binding	5.67E-05
9	GO:0016762: xyloglucan:xyloglucosyl transferase activity	6.75E-05
10	GO:0005506: iron ion binding	1.05E-04
11	GO:0016798: hydrolase activity, acting on glycosyl bonds	1.23E-04
12	GO:0004834: tryptophan synthase activity	1.53E-04
13	GO:0005496: steroid binding	1.98E-04
14	GO:0004602: glutathione peroxidase activity	2.97E-04
15	GO:0008113: peptide-methionine (S)-S-oxide reductase activity	2.97E-04
16	GO:0033743: peptide-methionine (R)-S-oxide reductase activity	2.97E-04
17	GO:0015035: protein disulfide oxidoreductase activity	4.57E-04
18	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	5.66E-04
19	GO:0004568: chitinase activity	6.38E-04
20	GO:0004540: ribonuclease activity	1.25E-03
21	GO:0004497: monooxygenase activity	1.39E-03
22	GO:0005451: monovalent cation:proton antiporter activity	1.65E-03
23	GO:0015299: solute:proton antiporter activity	1.82E-03
24	GO:0015385: sodium:proton antiporter activity	2.17E-03
25	GO:0009055: electron carrier activity	2.18E-03
26	GO:0004721: phosphoprotein phosphatase activity	2.84E-03
27	GO:0030145: manganese ion binding	3.36E-03
28	GO:0016614: oxidoreductase activity, acting on CH-OH group of donors	3.36E-03
29	GO:0004364: glutathione transferase activity	4.14E-03
30	GO:0051537: 2 iron, 2 sulfur cluster binding	4.48E-03
31	GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds	4.69E-03
32	GO:0045735: nutrient reservoir activity	5.85E-03
33	GO:0050660: flavin adenine dinucleotide binding	1.47E-02
34	GO:0004722: protein serine/threonine phosphatase activity	1.87E-02

Rank	GO Term	Adjusted P value
1	GO:0009530: primary cell wall	7.34E-05
2	GO:0048046: apoplast	8.59E-04
3	GO:0030176: integral component of endoplasmic reticulum membrane	9.64E-04
4	GO:0005618: cell wall	9.75E-04
5	GO:0005576: extracellular region	1.34E-03
6	GO:0005770: late endosome	1.73E-03
7	GO:0031965: nuclear membrane	1.90E-03
8	GO:0005783: endoplasmic reticulum	2.29E-03
9	GO:0000325: plant-type vacuole	3.36E-03
10	GO:0005635: nuclear envelope	5.46E-03
11	GO:0016607: nuclear speck	5.98E-03
12	GO:0009506: plasmodesma	2.50E-02
13	GO:0009941: chloroplast envelope	3.39E-02
14	GO:0009570: chloroplast stroma	4.72E-02
15	GO:0016020: membrane	4.80E-02