Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT4G28750

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0017038: protein import0.00E+00
2GO:0090279: regulation of calcium ion import0.00E+00
3GO:2000042: negative regulation of double-strand break repair via homologous recombination0.00E+00
4GO:0080114: positive regulation of glycine hydroxymethyltransferase activity0.00E+00
5GO:0005996: monosaccharide metabolic process0.00E+00
6GO:0016118: carotenoid catabolic process0.00E+00
7GO:0015717: triose phosphate transport0.00E+00
8GO:0018023: peptidyl-lysine trimethylation0.00E+00
9GO:0071474: cellular hyperosmotic response0.00E+00
10GO:0000023: maltose metabolic process0.00E+00
11GO:2000505: regulation of energy homeostasis0.00E+00
12GO:0002184: cytoplasmic translational termination0.00E+00
13GO:0015979: photosynthesis1.16E-32
14GO:0009768: photosynthesis, light harvesting in photosystem I2.69E-15
15GO:0018298: protein-chromophore linkage5.01E-12
16GO:0032544: plastid translation7.43E-12
17GO:0009773: photosynthetic electron transport in photosystem I1.03E-10
18GO:0009735: response to cytokinin7.71E-10
19GO:0010027: thylakoid membrane organization3.03E-09
20GO:0006412: translation7.24E-09
21GO:0010196: nonphotochemical quenching5.28E-08
22GO:0015995: chlorophyll biosynthetic process1.92E-07
23GO:0010206: photosystem II repair2.57E-07
24GO:0006109: regulation of carbohydrate metabolic process4.71E-07
25GO:0010207: photosystem II assembly2.10E-06
26GO:0009409: response to cold3.30E-06
27GO:0030388: fructose 1,6-bisphosphate metabolic process4.41E-06
28GO:0009645: response to low light intensity stimulus5.75E-06
29GO:0006000: fructose metabolic process1.57E-05
30GO:0042254: ribosome biogenesis1.61E-05
31GO:0043085: positive regulation of catalytic activity3.87E-05
32GO:0005983: starch catabolic process4.85E-05
33GO:0006094: gluconeogenesis5.95E-05
34GO:0010021: amylopectin biosynthetic process6.26E-05
35GO:0009658: chloroplast organization1.21E-04
36GO:0010218: response to far red light1.25E-04
37GO:0042549: photosystem II stabilization1.43E-04
38GO:0009637: response to blue light1.60E-04
39GO:0034599: cellular response to oxidative stress1.74E-04
40GO:0010114: response to red light2.48E-04
41GO:0009644: response to high light intensity2.82E-04
42GO:0045454: cell redox homeostasis2.96E-04
43GO:0000025: maltose catabolic process3.11E-04
44GO:0043953: protein transport by the Tat complex3.11E-04
45GO:0065002: intracellular protein transmembrane transport3.11E-04
46GO:0080093: regulation of photorespiration3.11E-04
47GO:0043007: maintenance of rDNA3.11E-04
48GO:0031998: regulation of fatty acid beta-oxidation3.11E-04
49GO:1902458: positive regulation of stomatal opening3.11E-04
50GO:0006662: glycerol ether metabolic process3.16E-04
51GO:0005978: glycogen biosynthetic process3.21E-04
52GO:0019252: starch biosynthetic process3.83E-04
53GO:0006002: fructose 6-phosphate metabolic process3.94E-04
54GO:0010205: photoinhibition5.59E-04
55GO:0035304: regulation of protein dephosphorylation6.81E-04
56GO:0009629: response to gravity6.81E-04
57GO:0016124: xanthophyll catabolic process6.81E-04
58GO:0019388: galactose catabolic process6.81E-04
59GO:0005976: polysaccharide metabolic process6.81E-04
60GO:0007154: cell communication6.81E-04
61GO:0018026: peptidyl-lysine monomethylation6.81E-04
62GO:0097054: L-glutamate biosynthetic process6.81E-04
63GO:0006729: tetrahydrobiopterin biosynthetic process6.81E-04
64GO:0016121: carotene catabolic process6.81E-04
65GO:1903426: regulation of reactive oxygen species biosynthetic process6.81E-04
66GO:0051262: protein tetramerization6.81E-04
67GO:0019684: photosynthesis, light reaction7.52E-04
68GO:0018119: peptidyl-cysteine S-nitrosylation7.52E-04
69GO:0045037: protein import into chloroplast stroma8.60E-04
70GO:0006006: glucose metabolic process9.73E-04
71GO:0005986: sucrose biosynthetic process9.73E-04
72GO:0019253: reductive pentose-phosphate cycle1.09E-03
73GO:0090391: granum assembly1.10E-03
74GO:0006518: peptide metabolic process1.10E-03
75GO:0035436: triose phosphate transmembrane transport1.10E-03
76GO:0090153: regulation of sphingolipid biosynthetic process1.10E-03
77GO:0016050: vesicle organization1.10E-03
78GO:0006537: glutamate biosynthetic process1.58E-03
79GO:0010731: protein glutathionylation1.58E-03
80GO:0009590: detection of gravity1.58E-03
81GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly1.58E-03
82GO:1902358: sulfate transmembrane transport1.58E-03
83GO:0071484: cellular response to light intensity1.58E-03
84GO:0055114: oxidation-reduction process1.68E-03
85GO:0042742: defense response to bacterium1.81E-03
86GO:0051322: anaphase2.12E-03
87GO:0019464: glycine decarboxylation via glycine cleavage system2.12E-03
88GO:0009765: photosynthesis, light harvesting2.12E-03
89GO:0045727: positive regulation of translation2.12E-03
90GO:0015994: chlorophyll metabolic process2.12E-03
91GO:0006546: glycine catabolic process2.12E-03
92GO:0015713: phosphoglycerate transport2.12E-03
93GO:0006808: regulation of nitrogen utilization2.12E-03
94GO:0010109: regulation of photosynthesis2.12E-03
95GO:0019676: ammonia assimilation cycle2.12E-03
96GO:0015976: carbon utilization2.12E-03
97GO:0016117: carotenoid biosynthetic process2.56E-03
98GO:0000304: response to singlet oxygen2.71E-03
99GO:0032543: mitochondrial translation2.71E-03
100GO:0016120: carotene biosynthetic process2.71E-03
101GO:0045038: protein import into chloroplast thylakoid membrane2.71E-03
102GO:0006097: glyoxylate cycle2.71E-03
103GO:0035434: copper ion transmembrane transport2.71E-03
104GO:0006461: protein complex assembly2.71E-03
105GO:0016123: xanthophyll biosynthetic process2.71E-03
106GO:0043086: negative regulation of catalytic activity3.13E-03
107GO:0006096: glycolytic process3.13E-03
108GO:0006814: sodium ion transport3.20E-03
109GO:0000470: maturation of LSU-rRNA3.35E-03
110GO:0010190: cytochrome b6f complex assembly3.35E-03
111GO:0019243: methylglyoxal catabolic process to D-lactate via S-lactoyl-glutathione3.35E-03
112GO:0009635: response to herbicide3.35E-03
113GO:0009643: photosynthetic acclimation3.35E-03
114GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway3.35E-03
115GO:0071554: cell wall organization or biogenesis3.68E-03
116GO:0009955: adaxial/abaxial pattern specification4.03E-03
117GO:1901259: chloroplast rRNA processing4.03E-03
118GO:0030488: tRNA methylation4.03E-03
119GO:0071446: cellular response to salicylic acid stimulus4.76E-03
120GO:0008272: sulfate transport4.76E-03
121GO:0009769: photosynthesis, light harvesting in photosystem II4.76E-03
122GO:0009642: response to light intensity5.53E-03
123GO:0006605: protein targeting5.53E-03
124GO:2000070: regulation of response to water deprivation5.53E-03
125GO:0009231: riboflavin biosynthetic process5.53E-03
126GO:0015996: chlorophyll catabolic process6.33E-03
127GO:0007186: G-protein coupled receptor signaling pathway6.33E-03
128GO:0009657: plastid organization6.33E-03
129GO:0017004: cytochrome complex assembly6.33E-03
130GO:2000031: regulation of salicylic acid mediated signaling pathway6.33E-03
131GO:0016311: dephosphorylation6.59E-03
132GO:0006098: pentose-phosphate shunt7.19E-03
133GO:0006783: heme biosynthetic process7.19E-03
134GO:0042761: very long-chain fatty acid biosynthetic process8.07E-03
135GO:0005982: starch metabolic process8.07E-03
136GO:0006782: protoporphyrinogen IX biosynthetic process9.00E-03
137GO:0048829: root cap development9.00E-03
138GO:0031627: telomeric loop formation9.00E-03
139GO:0009073: aromatic amino acid family biosynthetic process9.96E-03
140GO:0000272: polysaccharide catabolic process9.96E-03
141GO:0006415: translational termination9.96E-03
142GO:0009750: response to fructose9.96E-03
143GO:0009744: response to sucrose1.14E-02
144GO:0010628: positive regulation of gene expression1.20E-02
145GO:0006108: malate metabolic process1.20E-02
146GO:0050826: response to freezing1.20E-02
147GO:0009767: photosynthetic electron transport chain1.20E-02
148GO:0006810: transport1.23E-02
149GO:0046686: response to cadmium ion1.37E-02
150GO:0005985: sucrose metabolic process1.42E-02
151GO:0010025: wax biosynthetic process1.53E-02
152GO:0006636: unsaturated fatty acid biosynthetic process1.53E-02
153GO:0000027: ribosomal large subunit assembly1.65E-02
154GO:0006289: nucleotide-excision repair1.65E-02
155GO:0007017: microtubule-based process1.77E-02
156GO:0006825: copper ion transport1.77E-02
157GO:0006979: response to oxidative stress1.81E-02
158GO:0009416: response to light stimulus1.84E-02
159GO:0019915: lipid storage1.89E-02
160GO:0061077: chaperone-mediated protein folding1.89E-02
161GO:0031408: oxylipin biosynthetic process1.89E-02
162GO:0016114: terpenoid biosynthetic process1.89E-02
163GO:0035428: hexose transmembrane transport2.01E-02
164GO:0009624: response to nematode2.19E-02
165GO:0006284: base-excision repair2.27E-02
166GO:0009561: megagametogenesis2.27E-02
167GO:0042631: cellular response to water deprivation2.55E-02
168GO:0010182: sugar mediated signaling pathway2.68E-02
169GO:0048868: pollen tube development2.68E-02
170GO:0046323: glucose import2.68E-02
171GO:0009646: response to absence of light2.83E-02
172GO:0000302: response to reactive oxygen species3.12E-02
173GO:0009790: embryo development3.20E-02
174GO:0048235: pollen sperm cell differentiation3.27E-02
175GO:0010090: trichome morphogenesis3.42E-02
176GO:0009567: double fertilization forming a zygote and endosperm3.58E-02
177GO:0007623: circadian rhythm3.78E-02
178GO:0000910: cytokinesis3.89E-02
179GO:0009817: defense response to fungus, incompatible interaction4.89E-02
RankGO TermAdjusted P value
1GO:0030504: inorganic diphosphate transmembrane transporter activity0.00E+00
2GO:0033728: divinyl chlorophyllide a 8-vinyl-reductase activity0.00E+00
3GO:0047513: 1,2-alpha-L-fucosidase activity0.00E+00
4GO:0005363: maltose transmembrane transporter activity0.00E+00
5GO:0050515: 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase activity0.00E+00
6GO:0051744: 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity0.00E+00
7GO:0016166: phytoene dehydrogenase activity0.00E+00
8GO:0016730: oxidoreductase activity, acting on iron-sulfur proteins as donors0.00E+00
9GO:0046408: chlorophyll synthetase activity0.00E+00
10GO:0031409: pigment binding8.40E-16
11GO:0019843: rRNA binding5.57E-15
12GO:0016168: chlorophyll binding1.76E-12
13GO:0003735: structural constituent of ribosome1.74E-10
14GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity4.41E-06
15GO:0010297: heteropolysaccharide binding4.41E-06
16GO:0008047: enzyme activator activity3.04E-05
17GO:0016851: magnesium chelatase activity3.50E-05
18GO:0008266: poly(U) RNA binding7.21E-05
19GO:0004857: enzyme inhibitor activity1.19E-04
20GO:0047134: protein-disulfide reductase activity2.57E-04
21GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity3.11E-04
22GO:0004134: 4-alpha-glucanotransferase activity3.11E-04
23GO:0010242: oxygen evolving activity3.11E-04
24GO:0008835: diaminohydroxyphosphoribosylaminopyrimidine deaminase activity3.11E-04
25GO:0045157: electron transporter, transferring electrons within the noncyclic electron transport pathway of photosynthesis activity3.11E-04
26GO:0008158: hedgehog receptor activity3.11E-04
27GO:0004853: uroporphyrinogen decarboxylase activity3.11E-04
28GO:0045485: omega-6 fatty acid desaturase activity3.11E-04
29GO:0008124: 4-alpha-hydroxytetrahydrobiopterin dehydratase activity3.11E-04
30GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity3.11E-04
31GO:0016041: glutamate synthase (ferredoxin) activity3.11E-04
32GO:0005227: calcium activated cation channel activity3.11E-04
33GO:0004791: thioredoxin-disulfide reductase activity3.49E-04
34GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor4.95E-04
35GO:0033201: alpha-1,4-glucan synthase activity6.81E-04
36GO:0003844: 1,4-alpha-glucan branching enzyme activity6.81E-04
37GO:0004614: phosphoglucomutase activity6.81E-04
38GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity6.81E-04
39GO:0008967: phosphoglycolate phosphatase activity6.81E-04
40GO:0010291: carotene beta-ring hydroxylase activity6.81E-04
41GO:0047746: chlorophyllase activity6.81E-04
42GO:0009977: proton motive force dependent protein transmembrane transporter activity6.81E-04
43GO:0031072: heat shock protein binding9.73E-04
44GO:0043169: cation binding1.10E-03
45GO:0004373: glycogen (starch) synthase activity1.10E-03
46GO:0005504: fatty acid binding1.10E-03
47GO:0017150: tRNA dihydrouridine synthase activity1.10E-03
48GO:0045174: glutathione dehydrogenase (ascorbate) activity1.10E-03
49GO:0071917: triose-phosphate transmembrane transporter activity1.10E-03
50GO:0015462: ATPase-coupled protein transmembrane transporter activity1.10E-03
51GO:0004324: ferredoxin-NADP+ reductase activity1.10E-03
52GO:0005509: calcium ion binding1.51E-03
53GO:0004742: dihydrolipoyllysine-residue acetyltransferase activity1.58E-03
54GO:0004375: glycine dehydrogenase (decarboxylating) activity1.58E-03
55GO:0016149: translation release factor activity, codon specific1.58E-03
56GO:0043023: ribosomal large subunit binding1.58E-03
57GO:0004365: glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity1.58E-03
58GO:0008508: bile acid:sodium symporter activity1.58E-03
59GO:0045430: chalcone isomerase activity2.12E-03
60GO:0009011: starch synthase activity2.12E-03
61GO:0015120: phosphoglycerate transmembrane transporter activity2.12E-03
62GO:0016279: protein-lysine N-methyltransferase activity2.12E-03
63GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor2.12E-03
64GO:0003959: NADPH dehydrogenase activity2.71E-03
65GO:0004040: amidase activity2.71E-03
66GO:0051538: 3 iron, 4 sulfur cluster binding2.71E-03
67GO:0045549: 9-cis-epoxycarotenoid dioxygenase activity2.71E-03
68GO:0008725: DNA-3-methyladenine glycosylase activity2.71E-03
69GO:0004332: fructose-bisphosphate aldolase activity3.35E-03
70GO:0004130: cytochrome-c peroxidase activity3.35E-03
71GO:0004462: lactoylglutathione lyase activity3.35E-03
72GO:0016615: malate dehydrogenase activity3.35E-03
73GO:2001070: starch binding3.35E-03
74GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity4.03E-03
75GO:0004017: adenylate kinase activity4.03E-03
76GO:0030060: L-malate dehydrogenase activity4.03E-03
77GO:0005261: cation channel activity4.03E-03
78GO:0051920: peroxiredoxin activity4.03E-03
79GO:0015035: protein disulfide oxidoreductase activity4.12E-03
80GO:0016413: O-acetyltransferase activity5.02E-03
81GO:0004033: aldo-keto reductase (NADP) activity5.53E-03
82GO:0016209: antioxidant activity5.53E-03
83GO:0008271: secondary active sulfate transmembrane transporter activity6.33E-03
84GO:0005375: copper ion transmembrane transporter activity6.33E-03
85GO:0008173: RNA methyltransferase activity6.33E-03
86GO:0046872: metal ion binding6.67E-03
87GO:0003747: translation release factor activity7.19E-03
88GO:0003691: double-stranded telomeric DNA binding9.96E-03
89GO:0015116: sulfate transmembrane transporter activity1.10E-02
90GO:0004022: alcohol dehydrogenase (NAD) activity1.20E-02
91GO:0005315: inorganic phosphate transmembrane transporter activity1.20E-02
92GO:0004089: carbonate dehydratase activity1.20E-02
93GO:0015293: symporter activity1.28E-02
94GO:0005528: FK506 binding1.65E-02
95GO:0030570: pectate lyase activity2.14E-02
96GO:0051082: unfolded protein binding2.19E-02
97GO:0003756: protein disulfide isomerase activity2.27E-02
98GO:0008514: organic anion transmembrane transporter activity2.27E-02
99GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen2.82E-02
100GO:0005355: glucose transmembrane transporter activity2.83E-02
101GO:0050662: coenzyme binding2.83E-02
102GO:0048038: quinone binding3.12E-02
103GO:0015144: carbohydrate transmembrane transporter activity3.28E-02
104GO:0005351: sugar:proton symporter activity3.70E-02
105GO:0005200: structural constituent of cytoskeleton3.73E-02
106GO:0008236: serine-type peptidase activity4.72E-02
RankGO TermAdjusted P value
1GO:0009783: photosystem II antenna complex0.00E+00
2GO:0005943: phosphatidylinositol 3-kinase complex, class IA0.00E+00
3GO:0042579: microbody0.00E+00
4GO:0043235: receptor complex0.00E+00
5GO:0098572: stromal side of plastid thylakoid membrane0.00E+00
6GO:0009507: chloroplast1.09E-92
7GO:0009534: chloroplast thylakoid4.27E-75
8GO:0009535: chloroplast thylakoid membrane2.55E-68
9GO:0009941: chloroplast envelope1.34E-67
10GO:0009570: chloroplast stroma4.68E-53
11GO:0009579: thylakoid1.82E-48
12GO:0009543: chloroplast thylakoid lumen4.29E-23
13GO:0010287: plastoglobule6.10E-20
14GO:0031977: thylakoid lumen1.18E-19
15GO:0030095: chloroplast photosystem II2.23E-16
16GO:0009522: photosystem I1.20E-15
17GO:0030076: light-harvesting complex6.27E-14
18GO:0005840: ribosome9.89E-13
19GO:0009654: photosystem II oxygen evolving complex2.75E-11
20GO:0016020: membrane1.07E-10
21GO:0009523: photosystem II5.48E-10
22GO:0019898: extrinsic component of membrane5.48E-10
23GO:0010319: stromule1.93E-09
24GO:0009538: photosystem I reaction center9.53E-08
25GO:0048046: apoplast1.14E-07
26GO:0009508: plastid chromosome1.57E-06
27GO:0030093: chloroplast photosystem I4.41E-06
28GO:0042651: thylakoid membrane5.59E-06
29GO:0009706: chloroplast inner membrane8.98E-06
30GO:0010007: magnesium chelatase complex1.57E-05
31GO:0031969: chloroplast membrane2.93E-05
32GO:0009295: nucleoid5.12E-05
33GO:0055035: plastid thylakoid membrane9.88E-05
34GO:0015935: small ribosomal subunit1.59E-04
35GO:0009533: chloroplast stromal thylakoid2.54E-04
36GO:0009782: photosystem I antenna complex3.11E-04
37GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex3.11E-04
38GO:0009515: granal stacked thylakoid3.11E-04
39GO:0031361: integral component of thylakoid membrane3.11E-04
40GO:0009501: amyloplast3.21E-04
41GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)4.73E-04
42GO:0000427: plastid-encoded plastid RNA polymerase complex6.81E-04
43GO:0009536: plastid9.03E-04
44GO:0009528: plastid inner membrane1.10E-03
45GO:0033281: TAT protein transport complex1.10E-03
46GO:0009509: chromoplast1.10E-03
47GO:0015934: large ribosomal subunit1.12E-03
48GO:0005960: glycine cleavage complex1.58E-03
49GO:0009517: PSII associated light-harvesting complex II2.12E-03
50GO:0009527: plastid outer membrane2.12E-03
51GO:0005623: cell5.47E-03
52GO:0016021: integral component of membrane6.32E-03
53GO:0000783: nuclear telomere cap complex6.33E-03
54GO:0042644: chloroplast nucleoid7.19E-03
55GO:0045298: tubulin complex7.19E-03
56GO:0005763: mitochondrial small ribosomal subunit7.19E-03
57GO:0009574: preprophase band1.20E-02
58GO:0043234: protein complex1.53E-02
59GO:0009532: plastid stroma1.89E-02
60GO:0022625: cytosolic large ribosomal subunit1.95E-02
61GO:0009707: chloroplast outer membrane4.89E-02
<
Gene type



Gene DE type