Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT4G28550

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0045595: regulation of cell differentiation0.00E+00
2GO:1900067: regulation of cellular response to alkaline pH0.00E+00
3GO:0007229: integrin-mediated signaling pathway1.13E-05
4GO:0006741: NADP biosynthetic process3.00E-05
5GO:0019674: NAD metabolic process5.40E-05
6GO:0033014: tetrapyrrole biosynthetic process8.23E-05
7GO:0019363: pyridine nucleotide biosynthetic process8.23E-05
8GO:0045487: gibberellin catabolic process1.49E-04
9GO:0006777: Mo-molybdopterin cofactor biosynthetic process1.86E-04
10GO:0009611: response to wounding2.39E-04
11GO:0010161: red light signaling pathway2.66E-04
12GO:0006783: heme biosynthetic process3.97E-04
13GO:0006779: porphyrin-containing compound biosynthetic process4.44E-04
14GO:0009086: methionine biosynthetic process4.44E-04
15GO:0006782: protoporphyrinogen IX biosynthetic process4.91E-04
16GO:1903507: negative regulation of nucleic acid-templated transcription5.39E-04
17GO:0006970: response to osmotic stress8.26E-04
18GO:0009695: jasmonic acid biosynthetic process9.08E-04
19GO:0010200: response to chitin9.73E-04
20GO:0016226: iron-sulfur cluster assembly1.02E-03
21GO:2000022: regulation of jasmonic acid mediated signaling pathway1.02E-03
22GO:0010017: red or far-red light signaling pathway1.02E-03
23GO:0009686: gibberellin biosynthetic process1.08E-03
24GO:0051028: mRNA transport1.20E-03
25GO:0071472: cellular response to salt stress1.33E-03
26GO:0009749: response to glucose1.46E-03
27GO:0009753: response to jasmonic acid1.46E-03
28GO:0009639: response to red or far red light1.73E-03
29GO:0009873: ethylene-activated signaling pathway1.75E-03
30GO:0009788: negative regulation of abscisic acid-activated signaling pathway2.02E-03
31GO:0015995: chlorophyll biosynthetic process2.17E-03
32GO:0009651: response to salt stress2.60E-03
33GO:0009867: jasmonic acid mediated signaling pathway2.72E-03
34GO:0031347: regulation of defense response3.68E-03
35GO:0009736: cytokinin-activated signaling pathway3.95E-03
36GO:0009620: response to fungus4.73E-03
37GO:0000398: mRNA splicing, via spliceosome5.55E-03
38GO:0006470: protein dephosphorylation8.05E-03
39GO:0010468: regulation of gene expression8.30E-03
40GO:0009723: response to ethylene1.10E-02
41GO:0046777: protein autophosphorylation1.21E-02
42GO:0050832: defense response to fungus1.42E-02
43GO:0032259: methylation1.48E-02
44GO:0016042: lipid catabolic process1.50E-02
45GO:0006355: regulation of transcription, DNA-templated1.63E-02
46GO:0006357: regulation of transcription from RNA polymerase II promoter1.86E-02
47GO:0009908: flower development2.14E-02
48GO:0009738: abscisic acid-activated signaling pathway2.24E-02
49GO:0009416: response to light stimulus2.29E-02
50GO:0009555: pollen development2.29E-02
51GO:0035556: intracellular signal transduction2.38E-02
52GO:0006351: transcription, DNA-templated2.79E-02
53GO:0009414: response to water deprivation3.73E-02
54GO:0071555: cell wall organization3.80E-02
55GO:0042742: defense response to bacterium3.80E-02
56GO:0006979: response to oxidative stress3.82E-02
57GO:0030154: cell differentiation4.04E-02
58GO:0009733: response to auxin4.12E-02
59GO:0009409: response to cold4.71E-02
60GO:0006810: transport4.99E-02
RankGO TermAdjusted P value
1GO:0061798: GTP 3',8'-cyclase activity0.00E+00
2GO:0047150: betaine-homocysteine S-methyltransferase activity1.13E-05
3GO:0042736: NADH kinase activity1.13E-05
4GO:0008883: glutamyl-tRNA reductase activity3.00E-05
5GO:0008898: S-adenosylmethionine-homocysteine S-methyltransferase activity3.00E-05
6GO:0046423: allene-oxide cyclase activity5.40E-05
7GO:0052634: C-19 gibberellin 2-beta-dioxygenase activity8.23E-05
8GO:0003951: NAD+ kinase activity3.52E-04
9GO:0042973: glucan endo-1,3-beta-D-glucosidase activity6.92E-04
10GO:0003714: transcription corepressor activity8.54E-04
11GO:0004707: MAP kinase activity9.65E-04
12GO:0004721: phosphoprotein phosphatase activity2.17E-03
13GO:0004712: protein serine/threonine/tyrosine kinase activity2.89E-03
14GO:0050661: NADP binding2.97E-03
15GO:0051539: 4 iron, 4 sulfur cluster binding2.97E-03
16GO:0051537: 2 iron, 2 sulfur cluster binding3.41E-03
17GO:0016298: lipase activity4.05E-03
18GO:0043565: sequence-specific DNA binding4.42E-03
19GO:0052689: carboxylic ester hydrolase activity1.24E-02
20GO:0001135: transcription factor activity, RNA polymerase II transcription factor recruiting1.32E-02
21GO:0004722: protein serine/threonine phosphatase activity1.40E-02
22GO:0000981: RNA polymerase II transcription factor activity, sequence-specific DNA binding1.42E-02
23GO:0046872: metal ion binding1.48E-02
24GO:0000166: nucleotide binding2.29E-02
25GO:0003700: transcription factor activity, sequence-specific DNA binding2.69E-02
26GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds2.80E-02
27GO:0005525: GTP binding3.27E-02
28GO:0044212: transcription regulatory region DNA binding3.80E-02
29GO:0003824: catalytic activity4.06E-02
30GO:0005215: transporter activity4.08E-02
31GO:0004842: ubiquitin-protein transferase activity4.78E-02
RankGO TermAdjusted P value
1GO:0019008: molybdopterin synthase complex1.13E-05
2GO:0071013: catalytic step 2 spliceosome5.39E-04
3GO:0005758: mitochondrial intermembrane space8.54E-04
4GO:0005654: nucleoplasm5.76E-03
5GO:0005759: mitochondrial matrix6.87E-03
6GO:0046658: anchored component of plasma membrane8.92E-03
7GO:0080008: Cul4-RING E3 ubiquitin ligase complex1.06E-02
8GO:0005737: cytoplasm1.17E-02
9GO:0009536: plastid4.39E-02
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Gene type



Gene DE type