co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT4G28480

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0019481: L-alanine catabolic process, by transamination	0.00E+00
2	GO:0042353: fucose biosynthetic process	0.00E+00
3	GO:0007141: male meiosis I	0.00E+00
4	GO:0051180: vitamin transport	4.60E-05
5	GO:0006562: proline catabolic process	4.60E-05
6	GO:0030974: thiamine pyrophosphate transport	4.60E-05
7	GO:0009863: salicylic acid mediated signaling pathway	1.10E-04
8	GO:0015893: drug transport	1.13E-04
9	GO:0010133: proline catabolic process to glutamate	1.13E-04
10	GO:0042754: negative regulation of circadian rhythm	1.13E-04
11	GO:0010372: positive regulation of gibberellin biosynthetic process	1.13E-04
12	GO:0009408: response to heat	1.28E-04
13	GO:0006537: glutamate biosynthetic process	2.85E-04
14	GO:0030100: regulation of endocytosis	2.85E-04
15	GO:0046686: response to cadmium ion	3.69E-04
16	GO:0042991: transcription factor import into nucleus	3.84E-04
17	GO:0010256: endomembrane system organization	5.98E-04
18	GO:0048232: male gamete generation	5.98E-04
19	GO:0007205: protein kinase C-activating G-protein coupled receptor signaling pathway	8.33E-04
20	GO:1900150: regulation of defense response to fungus	9.57E-04
21	GO:0006402: mRNA catabolic process	9.57E-04
22	GO:2000070: regulation of response to water deprivation	9.57E-04
23	GO:0048658: anther wall tapetum development	9.57E-04
24	GO:0009699: phenylpropanoid biosynthetic process	1.09E-03
25	GO:0090305: nucleic acid phosphodiester bond hydrolysis	1.22E-03
26	GO:0098656: anion transmembrane transport	1.22E-03
27	GO:0046685: response to arsenic-containing substance	1.22E-03
28	GO:0051026: chiasma assembly	1.51E-03
29	GO:0009742: brassinosteroid mediated signaling pathway	1.70E-03
30	GO:0034605: cellular response to heat	2.14E-03
31	GO:0009555: pollen development	2.18E-03
32	GO:0070588: calcium ion transmembrane transport	2.31E-03
33	GO:0009969: xyloglucan biosynthetic process	2.31E-03
34	GO:0006457: protein folding	3.02E-03
35	GO:0061077: chaperone-mediated protein folding	3.04E-03
36	GO:0007131: reciprocal meiotic recombination	3.23E-03
37	GO:0030433: ubiquitin-dependent ERAD pathway	3.23E-03
38	GO:0009686: gibberellin biosynthetic process	3.43E-03
39	GO:0009306: protein secretion	3.63E-03
40	GO:0000271: polysaccharide biosynthetic process	4.04E-03
41	GO:0045489: pectin biosynthetic process	4.25E-03
42	GO:0006814: sodium ion transport	4.47E-03
43	GO:0048366: leaf development	4.95E-03
44	GO:0031047: gene silencing by RNA	5.13E-03
45	GO:0080167: response to karrikin	5.21E-03
46	GO:0010090: trichome morphogenesis	5.37E-03
47	GO:0006310: DNA recombination	5.60E-03
48	GO:0006904: vesicle docking involved in exocytosis	5.84E-03
49	GO:0001666: response to hypoxia	6.32E-03
50	GO:0009615: response to virus	6.32E-03
51	GO:0009816: defense response to bacterium, incompatible interaction	6.57E-03
52	GO:0009409: response to cold	7.81E-03
53	GO:0006811: ion transport	8.14E-03
54	GO:0016051: carbohydrate biosynthetic process	8.96E-03
55	GO:0006839: mitochondrial transport	9.82E-03
56	GO:0009873: ethylene-activated signaling pathway	9.92E-03
57	GO:0006887: exocytosis	1.01E-02
58	GO:0006897: endocytosis	1.01E-02
59	GO:0006260: DNA replication	1.23E-02
60	GO:0006812: cation transport	1.26E-02
61	GO:0006952: defense response	1.30E-02
62	GO:0006813: potassium ion transport	1.32E-02
63	GO:0009736: cytokinin-activated signaling pathway	1.32E-02
64	GO:0009809: lignin biosynthetic process	1.32E-02
65	GO:0009620: response to fungus	1.59E-02
66	GO:0009624: response to nematode	1.70E-02
67	GO:0009845: seed germination	2.10E-02
68	GO:0006633: fatty acid biosynthetic process	2.34E-02
69	GO:0009651: response to salt stress	2.46E-02
70	GO:0007623: circadian rhythm	2.50E-02
71	GO:0006470: protein dephosphorylation	2.75E-02
72	GO:0007166: cell surface receptor signaling pathway	2.75E-02
73	GO:0009826: unidimensional cell growth	3.32E-02
74	GO:0006970: response to osmotic stress	3.60E-02
75	GO:0006810: transport	4.06E-02
76	GO:0016192: vesicle-mediated transport	4.13E-02
77	GO:0046777: protein autophosphorylation	4.18E-02
78	GO:0006886: intracellular protein transport	4.63E-02

Rank	GO Term	Adjusted P value
1	GO:0032442: phenylcoumaran benzylic ether reductase activity	0.00E+00
2	GO:0004657: proline dehydrogenase activity	4.60E-05
3	GO:0090422: thiamine pyrophosphate transporter activity	4.60E-05
4	GO:0030544: Hsp70 protein binding	4.60E-05
5	GO:0005432: calcium:sodium antiporter activity	2.85E-04
6	GO:0004021: L-alanine:2-oxoglutarate aminotransferase activity	2.85E-04
7	GO:0004518: nuclease activity	3.07E-04
8	GO:0004301: epoxide hydrolase activity	3.84E-04
9	GO:0002020: protease binding	4.88E-04
10	GO:0009922: fatty acid elongase activity	4.88E-04
11	GO:0004143: diacylglycerol kinase activity	8.33E-04
12	GO:0016621: cinnamoyl-CoA reductase activity	8.33E-04
13	GO:0015491: cation:cation antiporter activity	9.57E-04
14	GO:0003951: NAD+ kinase activity	1.09E-03
15	GO:0031625: ubiquitin protein ligase binding	1.26E-03
16	GO:0005315: inorganic phosphate transmembrane transporter activity	1.98E-03
17	GO:0019888: protein phosphatase regulator activity	1.98E-03
18	GO:0005388: calcium-transporting ATPase activity	1.98E-03
19	GO:0102337: 3-oxo-cerotoyl-CoA synthase activity	2.49E-03
20	GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity	2.49E-03
21	GO:0102336: 3-oxo-arachidoyl-CoA synthase activity	2.49E-03
22	GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity	3.23E-03
23	GO:0008514: organic anion transmembrane transporter activity	3.63E-03
24	GO:0008536: Ran GTPase binding	4.25E-03
25	GO:0050662: coenzyme binding	4.47E-03
26	GO:0051082: unfolded protein binding	1.70E-02
27	GO:0030246: carbohydrate binding	1.84E-02
28	GO:0016758: transferase activity, transferring hexosyl groups	1.95E-02
29	GO:0015144: carbohydrate transmembrane transporter activity	2.26E-02
30	GO:0008565: protein transporter activity	2.26E-02
31	GO:0004675: transmembrane receptor protein serine/threonine kinase activity	2.38E-02
32	GO:0015297: antiporter activity	2.42E-02
33	GO:0005351: sugar:proton symporter activity	2.46E-02
34	GO:0005524: ATP binding	3.11E-02
35	GO:0003676: nucleic acid binding	3.18E-02
36	GO:0003682: chromatin binding	3.55E-02
37	GO:0003729: mRNA binding	4.12E-02
38	GO:0001135: transcription factor activity, RNA polymerase II transcription factor recruiting	4.52E-02
39	GO:0004722: protein serine/threonine phosphatase activity	4.83E-02
40	GO:0000981: RNA polymerase II transcription factor activity, sequence-specific DNA binding	4.88E-02

Rank	GO Term	Adjusted P value
1	GO:0016442: RISC complex	4.60E-05
2	GO:0030173: integral component of Golgi membrane	7.13E-04
3	GO:0016363: nuclear matrix	7.13E-04
4	GO:0010494: cytoplasmic stress granule	1.22E-03
5	GO:0048471: perinuclear region of cytoplasm	1.66E-03
6	GO:0000159: protein phosphatase type 2A complex	1.66E-03
7	GO:0019013: viral nucleocapsid	1.98E-03
8	GO:0005794: Golgi apparatus	2.79E-03
9	GO:0005886: plasma membrane	3.20E-03
10	GO:0000790: nuclear chromatin	3.83E-03
11	GO:0005768: endosome	4.65E-03
12	GO:0000145: exocyst	5.13E-03
13	GO:0032580: Golgi cisterna membrane	5.60E-03
14	GO:0000932: P-body	6.32E-03
15	GO:0005643: nuclear pore	7.60E-03
16	GO:0016021: integral component of membrane	1.09E-02
17	GO:0005635: nuclear envelope	1.39E-02
18	GO:0010008: endosome membrane	1.52E-02
19	GO:0009506: plasmodesma	1.56E-02
20	GO:0005783: endoplasmic reticulum	1.84E-02
21	GO:0005802: trans-Golgi network	2.19E-02
22	GO:0005737: cytoplasm	3.28E-02
23	GO:0009536: plastid	3.40E-02
24	GO:0005829: cytosol	3.46E-02
25	GO:0080008: Cul4-RING E3 ubiquitin ligase complex	3.65E-02
26	GO:0000139: Golgi membrane	3.75E-02
27	GO:0005730: nucleolus	4.67E-02
28	GO:0005743: mitochondrial inner membrane	4.98E-02