GO Enrichment Analysis of Co-expressed Genes with
AT4G28450
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0000495: box H/ACA snoRNA 3'-end processing | 0.00E+00 |
| 2 | GO:0072321: chaperone-mediated protein transport | 0.00E+00 |
| 3 | GO:0044843: cell cycle G1/S phase transition | 0.00E+00 |
| 4 | GO:0008612: peptidyl-lysine modification to peptidyl-hypusine | 0.00E+00 |
| 5 | GO:0071731: response to nitric oxide | 0.00E+00 |
| 6 | GO:1990481: mRNA pseudouridine synthesis | 0.00E+00 |
| 7 | GO:0000466: maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | 0.00E+00 |
| 8 | GO:0080180: 2-methylguanosine metabolic process | 0.00E+00 |
| 9 | GO:0006364: rRNA processing | 3.77E-17 |
| 10 | GO:0009553: embryo sac development | 7.78E-07 |
| 11 | GO:0006412: translation | 1.41E-06 |
| 12 | GO:0000463: maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | 1.55E-06 |
| 13 | GO:0010162: seed dormancy process | 8.22E-06 |
| 14 | GO:0042273: ribosomal large subunit biogenesis | 2.45E-05 |
| 15 | GO:0030150: protein import into mitochondrial matrix | 3.60E-05 |
| 16 | GO:0042254: ribosome biogenesis | 1.54E-04 |
| 17 | GO:0000469: cleavage involved in rRNA processing | 1.80E-04 |
| 18 | GO:0031118: rRNA pseudouridine synthesis | 1.80E-04 |
| 19 | GO:0017183: peptidyl-diphthamide biosynthetic process from peptidyl-histidine | 1.80E-04 |
| 20 | GO:0030490: maturation of SSU-rRNA | 1.80E-04 |
| 21 | GO:0000494: box C/D snoRNA 3'-end processing | 1.80E-04 |
| 22 | GO:0043985: histone H4-R3 methylation | 1.80E-04 |
| 23 | GO:1990258: histone glutamine methylation | 1.80E-04 |
| 24 | GO:0002143: tRNA wobble position uridine thiolation | 1.80E-04 |
| 25 | GO:0031120: snRNA pseudouridine synthesis | 1.80E-04 |
| 26 | GO:0008535: respiratory chain complex IV assembly | 4.05E-04 |
| 27 | GO:0080009: mRNA methylation | 4.05E-04 |
| 28 | GO:0045041: protein import into mitochondrial intermembrane space | 4.05E-04 |
| 29 | GO:0034470: ncRNA processing | 4.05E-04 |
| 30 | GO:0006626: protein targeting to mitochondrion | 4.55E-04 |
| 31 | GO:0045039: protein import into mitochondrial inner membrane | 6.61E-04 |
| 32 | GO:0006556: S-adenosylmethionine biosynthetic process | 6.61E-04 |
| 33 | GO:0009944: polarity specification of adaxial/abaxial axis | 7.06E-04 |
| 34 | GO:0051302: regulation of cell division | 7.77E-04 |
| 35 | GO:0007005: mitochondrion organization | 9.27E-04 |
| 36 | GO:0033617: mitochondrial respiratory chain complex IV assembly | 9.45E-04 |
| 37 | GO:0007276: gamete generation | 9.45E-04 |
| 38 | GO:0009855: determination of bilateral symmetry | 9.45E-04 |
| 39 | GO:0051131: chaperone-mediated protein complex assembly | 9.45E-04 |
| 40 | GO:0032981: mitochondrial respiratory chain complex I assembly | 9.45E-04 |
| 41 | GO:0009294: DNA mediated transformation | 1.01E-03 |
| 42 | GO:0009561: megagametogenesis | 1.09E-03 |
| 43 | GO:1900864: mitochondrial RNA modification | 1.25E-03 |
| 44 | GO:0046345: abscisic acid catabolic process | 1.25E-03 |
| 45 | GO:0042274: ribosomal small subunit biogenesis | 1.25E-03 |
| 46 | GO:0000460: maturation of 5.8S rRNA | 1.25E-03 |
| 47 | GO:0008033: tRNA processing | 1.27E-03 |
| 48 | GO:0010501: RNA secondary structure unwinding | 1.27E-03 |
| 49 | GO:0016569: covalent chromatin modification | 1.35E-03 |
| 50 | GO:0006396: RNA processing | 1.51E-03 |
| 51 | GO:0000380: alternative mRNA splicing, via spliceosome | 1.59E-03 |
| 52 | GO:0010375: stomatal complex patterning | 1.59E-03 |
| 53 | GO:0031167: rRNA methylation | 1.59E-03 |
| 54 | GO:0006777: Mo-molybdopterin cofactor biosynthetic process | 1.96E-03 |
| 55 | GO:0000470: maturation of LSU-rRNA | 1.96E-03 |
| 56 | GO:0016554: cytidine to uridine editing | 1.96E-03 |
| 57 | GO:0042026: protein refolding | 2.35E-03 |
| 58 | GO:0000462: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | 2.35E-03 |
| 59 | GO:0006458: 'de novo' protein folding | 2.35E-03 |
| 60 | GO:0006400: tRNA modification | 2.77E-03 |
| 61 | GO:0010374: stomatal complex development | 2.77E-03 |
| 62 | GO:0080186: developmental vegetative growth | 2.77E-03 |
| 63 | GO:0009451: RNA modification | 2.98E-03 |
| 64 | GO:0001510: RNA methylation | 3.67E-03 |
| 65 | GO:0001558: regulation of cell growth | 3.67E-03 |
| 66 | GO:0000387: spliceosomal snRNP assembly | 4.65E-03 |
| 67 | GO:1900865: chloroplast RNA modification | 4.65E-03 |
| 68 | GO:0030422: production of siRNA involved in RNA interference | 5.18E-03 |
| 69 | GO:0006259: DNA metabolic process | 5.18E-03 |
| 70 | GO:0006913: nucleocytoplasmic transport | 5.72E-03 |
| 71 | GO:0010582: floral meristem determinacy | 6.28E-03 |
| 72 | GO:0090351: seedling development | 8.08E-03 |
| 73 | GO:0010030: positive regulation of seed germination | 8.08E-03 |
| 74 | GO:0000027: ribosomal large subunit assembly | 9.37E-03 |
| 75 | GO:0046686: response to cadmium ion | 9.65E-03 |
| 76 | GO:0032259: methylation | 1.03E-02 |
| 77 | GO:0061077: chaperone-mediated protein folding | 1.07E-02 |
| 78 | GO:0006730: one-carbon metabolic process | 1.14E-02 |
| 79 | GO:0009693: ethylene biosynthetic process | 1.22E-02 |
| 80 | GO:0070417: cellular response to cold | 1.37E-02 |
| 81 | GO:0000413: protein peptidyl-prolyl isomerization | 1.44E-02 |
| 82 | GO:0010197: polar nucleus fusion | 1.52E-02 |
| 83 | GO:0009960: endosperm development | 1.52E-02 |
| 84 | GO:0006413: translational initiation | 1.59E-02 |
| 85 | GO:0080156: mitochondrial mRNA modification | 1.77E-02 |
| 86 | GO:0009793: embryo development ending in seed dormancy | 1.91E-02 |
| 87 | GO:0071281: cellular response to iron ion | 1.94E-02 |
| 88 | GO:0016049: cell growth | 2.68E-02 |
| 89 | GO:0048527: lateral root development | 3.08E-02 |
| 90 | GO:0006414: translational elongation | 3.70E-02 |
| 91 | GO:0045892: negative regulation of transcription, DNA-templated | 3.97E-02 |
| 92 | GO:0000154: rRNA modification | 4.27E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0016018: cyclosporin A binding | 0.00E+00 |
| 2 | GO:0003963: RNA-3'-phosphate cyclase activity | 0.00E+00 |
| 3 | GO:0061604: molybdopterin-synthase sulfurtransferase activity | 0.00E+00 |
| 4 | GO:0004164: diphthine synthase activity | 0.00E+00 |
| 5 | GO:0061605: molybdopterin-synthase adenylyltransferase activity | 0.00E+00 |
| 6 | GO:0034038: deoxyhypusine synthase activity | 0.00E+00 |
| 7 | GO:0003723: RNA binding | 2.02E-19 |
| 8 | GO:0000166: nucleotide binding | 2.69E-09 |
| 9 | GO:0003735: structural constituent of ribosome | 4.29E-09 |
| 10 | GO:0004407: histone deacetylase activity | 7.86E-07 |
| 11 | GO:0008026: ATP-dependent helicase activity | 1.02E-06 |
| 12 | GO:0030515: snoRNA binding | 1.44E-06 |
| 13 | GO:0043021: ribonucleoprotein complex binding | 1.55E-06 |
| 14 | GO:0003746: translation elongation factor activity | 3.75E-05 |
| 15 | GO:0003899: DNA-directed 5'-3' RNA polymerase activity | 1.06E-04 |
| 16 | GO:1990259: histone-glutamine methyltransferase activity | 1.80E-04 |
| 17 | GO:0042134: rRNA primary transcript binding | 1.80E-04 |
| 18 | GO:0016422: mRNA (2'-O-methyladenosine-N6-)-methyltransferase activity | 1.80E-04 |
| 19 | GO:0001055: RNA polymerase II activity | 2.55E-04 |
| 20 | GO:0004004: ATP-dependent RNA helicase activity | 3.01E-04 |
| 21 | GO:0001054: RNA polymerase I activity | 3.48E-04 |
| 22 | GO:0001056: RNA polymerase III activity | 4.00E-04 |
| 23 | GO:0052640: salicylic acid glucosyltransferase (glucoside-forming) activity | 4.05E-04 |
| 24 | GO:0009982: pseudouridine synthase activity | 4.55E-04 |
| 25 | GO:0004478: methionine adenosyltransferase activity | 6.61E-04 |
| 26 | GO:0008265: Mo-molybdopterin cofactor sulfurase activity | 6.61E-04 |
| 27 | GO:0015462: ATPase-coupled protein transmembrane transporter activity | 6.61E-04 |
| 28 | GO:0070181: small ribosomal subunit rRNA binding | 6.61E-04 |
| 29 | GO:0008649: rRNA methyltransferase activity | 6.61E-04 |
| 30 | GO:0004792: thiosulfate sulfurtransferase activity | 9.45E-04 |
| 31 | GO:0046527: glucosyltransferase activity | 1.25E-03 |
| 32 | GO:0008641: small protein activating enzyme activity | 1.59E-03 |
| 33 | GO:0019843: rRNA binding | 1.93E-03 |
| 34 | GO:0003729: mRNA binding | 2.61E-03 |
| 35 | GO:0008235: metalloexopeptidase activity | 2.77E-03 |
| 36 | GO:0050897: cobalt ion binding | 3.63E-03 |
| 37 | GO:0008173: RNA methyltransferase activity | 3.67E-03 |
| 38 | GO:0003678: DNA helicase activity | 4.15E-03 |
| 39 | GO:0008168: methyltransferase activity | 4.81E-03 |
| 40 | GO:0016787: hydrolase activity | 5.36E-03 |
| 41 | GO:0044183: protein binding involved in protein folding | 5.72E-03 |
| 42 | GO:0004521: endoribonuclease activity | 6.28E-03 |
| 43 | GO:0000049: tRNA binding | 6.28E-03 |
| 44 | GO:0051082: unfolded protein binding | 9.83E-03 |
| 45 | GO:0051087: chaperone binding | 1.00E-02 |
| 46 | GO:0004519: endonuclease activity | 1.21E-02 |
| 47 | GO:0004527: exonuclease activity | 1.52E-02 |
| 48 | GO:0010181: FMN binding | 1.60E-02 |
| 49 | GO:0003676: nucleic acid binding | 1.89E-02 |
| 50 | GO:0003743: translation initiation factor activity | 1.99E-02 |
| 51 | GO:0004721: phosphoprotein phosphatase activity | 2.58E-02 |
| 52 | GO:0008757: S-adenosylmethionine-dependent methyltransferase activity | 2.68E-02 |
| 53 | GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity | 2.77E-02 |
| 54 | GO:0000987: core promoter proximal region sequence-specific DNA binding | 3.39E-02 |
| 55 | GO:0051539: 4 iron, 4 sulfur cluster binding | 3.60E-02 |
| 56 | GO:0003755: peptidyl-prolyl cis-trans isomerase activity | 4.39E-02 |
| 57 | GO:0003924: GTPase activity | 4.81E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0034455: t-UTP complex | 0.00E+00 |
| 2 | GO:0036396: MIS complex | 0.00E+00 |
| 3 | GO:0042719: mitochondrial intermembrane space protein transporter complex | 0.00E+00 |
| 4 | GO:0034457: Mpp10 complex | 0.00E+00 |
| 5 | GO:0005730: nucleolus | 3.53E-37 |
| 6 | GO:0032040: small-subunit processome | 1.33E-11 |
| 7 | GO:0005634: nucleus | 5.86E-08 |
| 8 | GO:0005840: ribosome | 1.29E-07 |
| 9 | GO:0030687: preribosome, large subunit precursor | 1.44E-06 |
| 10 | GO:0080008: Cul4-RING E3 ubiquitin ligase complex | 1.52E-06 |
| 11 | GO:0070545: PeBoW complex | 1.55E-06 |
| 12 | GO:0022625: cytosolic large ribosomal subunit | 3.20E-05 |
| 13 | GO:0031428: box C/D snoRNP complex | 5.89E-05 |
| 14 | GO:0005744: mitochondrial inner membrane presequence translocase complex | 7.39E-05 |
| 15 | GO:0030688: preribosome, small subunit precursor | 1.80E-04 |
| 16 | GO:0005736: DNA-directed RNA polymerase I complex | 2.13E-04 |
| 17 | GO:0005666: DNA-directed RNA polymerase III complex | 2.55E-04 |
| 18 | GO:0015030: Cajal body | 2.55E-04 |
| 19 | GO:0022626: cytosolic ribosome | 2.60E-04 |
| 20 | GO:0000418: DNA-directed RNA polymerase IV complex | 3.00E-04 |
| 21 | GO:0005665: DNA-directed RNA polymerase II, core complex | 4.00E-04 |
| 22 | GO:0005759: mitochondrial matrix | 4.12E-04 |
| 23 | GO:0005743: mitochondrial inner membrane | 4.15E-04 |
| 24 | GO:0000419: DNA-directed RNA polymerase V complex | 6.38E-04 |
| 25 | GO:0022627: cytosolic small ribosomal subunit | 7.33E-04 |
| 26 | GO:0015935: small ribosomal subunit | 8.51E-04 |
| 27 | GO:0031429: box H/ACA snoRNP complex | 9.45E-04 |
| 28 | GO:0005747: mitochondrial respiratory chain complex I | 1.20E-03 |
| 29 | GO:0005834: heterotrimeric G-protein complex | 1.25E-03 |
| 30 | GO:0000178: exosome (RNase complex) | 1.59E-03 |
| 31 | GO:0005618: cell wall | 2.16E-03 |
| 32 | GO:0016363: nuclear matrix | 2.35E-03 |
| 33 | GO:0030529: intracellular ribonucleoprotein complex | 2.42E-03 |
| 34 | GO:0034399: nuclear periphery | 3.21E-03 |
| 35 | GO:0005739: mitochondrion | 3.41E-03 |
| 36 | GO:0015934: large ribosomal subunit | 3.63E-03 |
| 37 | GO:0005763: mitochondrial small ribosomal subunit | 4.15E-03 |
| 38 | GO:0005774: vacuolar membrane | 4.70E-03 |
| 39 | GO:0005852: eukaryotic translation initiation factor 3 complex | 5.72E-03 |
| 40 | GO:0031307: integral component of mitochondrial outer membrane | 6.28E-03 |
| 41 | GO:0019013: viral nucleocapsid | 6.86E-03 |
| 42 | GO:0005758: mitochondrial intermembrane space | 9.37E-03 |
| 43 | GO:0005654: nucleoplasm | 1.20E-02 |
| 44 | GO:0016592: mediator complex | 1.85E-02 |
| 45 | GO:0005773: vacuole | 3.05E-02 |
| 46 | GO:0005622: intracellular | 4.58E-02 |
| 47 | GO:0005829: cytosol | 4.64E-02 |