co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT4G28350

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0019593: mannitol biosynthetic process	0.00E+00
2	GO:0071289: cellular response to nickel ion	0.00E+00
3	GO:0070328: triglyceride homeostasis	0.00E+00
4	GO:0006862: nucleotide transport	0.00E+00
5	GO:0042353: fucose biosynthetic process	0.00E+00
6	GO:0055091: phospholipid homeostasis	0.00E+00
7	GO:0034775: glutathione transmembrane transport	0.00E+00
8	GO:0032497: detection of lipopolysaccharide	0.00E+00
9	GO:0035024: negative regulation of Rho protein signal transduction	0.00E+00
10	GO:0071629: ubiquitin-dependent catabolism of misfolded proteins by cytoplasm-associated proteasome	0.00E+00
11	GO:0010200: response to chitin	1.89E-14
12	GO:0006751: glutathione catabolic process	2.48E-06
13	GO:0006955: immune response	6.86E-06
14	GO:0006468: protein phosphorylation	7.49E-06
15	GO:0042344: indole glucosinolate catabolic process	1.79E-05
16	GO:2000280: regulation of root development	2.75E-05
17	GO:0015700: arsenite transport	3.96E-05
18	GO:0002679: respiratory burst involved in defense response	3.96E-05
19	GO:0009737: response to abscisic acid	4.36E-05
20	GO:0052544: defense response by callose deposition in cell wall	4.56E-05
21	GO:0006952: defense response	6.01E-05
22	GO:0009611: response to wounding	1.18E-04
23	GO:0010337: regulation of salicylic acid metabolic process	1.60E-04
24	GO:0031408: oxylipin biosynthetic process	1.83E-04
25	GO:0009873: ethylene-activated signaling pathway	2.27E-04
26	GO:0090421: embryonic meristem initiation	3.34E-04
27	GO:0010726: positive regulation of hydrogen peroxide metabolic process	3.34E-04
28	GO:1902265: abscisic acid homeostasis	3.34E-04
29	GO:0051180: vitamin transport	3.34E-04
30	GO:0046938: phytochelatin biosynthetic process	3.34E-04
31	GO:0030974: thiamine pyrophosphate transport	3.34E-04
32	GO:0009865: pollen tube adhesion	3.34E-04
33	GO:0050691: regulation of defense response to virus by host	3.34E-04
34	GO:0006680: glucosylceramide catabolic process	3.34E-04
35	GO:2000070: regulation of response to water deprivation	3.55E-04
36	GO:0048544: recognition of pollen	3.99E-04
37	GO:0046685: response to arsenic-containing substance	5.24E-04
38	GO:0051865: protein autoubiquitination	5.24E-04
39	GO:0031407: oxylipin metabolic process	7.29E-04
40	GO:0042754: negative regulation of circadian rhythm	7.29E-04
41	GO:0010289: homogalacturonan biosynthetic process	7.29E-04
42	GO:0055088: lipid homeostasis	7.29E-04
43	GO:0006898: receptor-mediated endocytosis	7.29E-04
44	GO:0015893: drug transport	7.29E-04
45	GO:0052542: defense response by callose deposition	7.29E-04
46	GO:0010507: negative regulation of autophagy	7.29E-04
47	GO:0006970: response to osmotic stress	9.09E-04
48	GO:0009961: response to 1-aminocyclopropane-1-carboxylic acid	1.18E-03
49	GO:0010325: raffinose family oligosaccharide biosynthetic process	1.18E-03
50	GO:0080168: abscisic acid transport	1.18E-03
51	GO:0007188: adenylate cyclase-modulating G-protein coupled receptor signaling pathway	1.18E-03
52	GO:0016045: detection of bacterium	1.18E-03
53	GO:0010359: regulation of anion channel activity	1.18E-03
54	GO:0010288: response to lead ion	1.18E-03
55	GO:0090630: activation of GTPase activity	1.18E-03
56	GO:0009863: salicylic acid mediated signaling pathway	1.66E-03
57	GO:0080170: hydrogen peroxide transmembrane transport	1.70E-03
58	GO:0030100: regulation of endocytosis	1.70E-03
59	GO:0033014: tetrapyrrole biosynthetic process	1.70E-03
60	GO:0055089: fatty acid homeostasis	1.70E-03
61	GO:0009695: jasmonic acid biosynthetic process	1.84E-03
62	GO:0051707: response to other organism	1.98E-03
63	GO:0007166: cell surface receptor signaling pathway	2.28E-03
64	GO:0009687: abscisic acid metabolic process	2.28E-03
65	GO:0046345: abscisic acid catabolic process	2.28E-03
66	GO:0009652: thigmotropism	2.28E-03
67	GO:0045727: positive regulation of translation	2.28E-03
68	GO:0034440: lipid oxidation	2.28E-03
69	GO:1902347: response to strigolactone	2.28E-03
70	GO:0009617: response to bacterium	2.44E-03
71	GO:0006665: sphingolipid metabolic process	2.91E-03
72	GO:0032957: inositol trisphosphate metabolic process	2.91E-03
73	GO:0045487: gibberellin catabolic process	2.91E-03
74	GO:0048497: maintenance of floral organ identity	2.91E-03
75	GO:0010256: endomembrane system organization	3.60E-03
76	GO:0047484: regulation of response to osmotic stress	3.60E-03
77	GO:0010942: positive regulation of cell death	3.60E-03
78	GO:0009749: response to glucose	3.81E-03
79	GO:0016567: protein ubiquitination	3.86E-03
80	GO:0010193: response to ozone	4.08E-03
81	GO:0010555: response to mannitol	4.33E-03
82	GO:0080086: stamen filament development	4.33E-03
83	GO:2000067: regulation of root morphogenesis	4.33E-03
84	GO:1901001: negative regulation of response to salt stress	4.33E-03
85	GO:0052033: pathogen-associated molecular pattern dependent induction by symbiont of host innate immune response	4.33E-03
86	GO:0098655: cation transmembrane transport	4.33E-03
87	GO:0019760: glucosinolate metabolic process	4.94E-03
88	GO:0009864: induced systemic resistance, jasmonic acid mediated signaling pathway	5.11E-03
89	GO:0007155: cell adhesion	5.94E-03
90	GO:0009061: anaerobic respiration	5.94E-03
91	GO:0009819: drought recovery	5.94E-03
92	GO:1900150: regulation of defense response to fungus	5.94E-03
93	GO:0006875: cellular metal ion homeostasis	5.94E-03
94	GO:0045010: actin nucleation	5.94E-03
95	GO:0009414: response to water deprivation	6.80E-03
96	GO:0009699: phenylpropanoid biosynthetic process	6.81E-03
97	GO:0009932: cell tip growth	6.81E-03
98	GO:0009880: embryonic pattern specification	6.81E-03
99	GO:0009827: plant-type cell wall modification	6.81E-03
100	GO:0007186: G-protein coupled receptor signaling pathway	6.81E-03
101	GO:0035556: intracellular signal transduction	6.94E-03
102	GO:0042742: defense response to bacterium	7.13E-03
103	GO:0006979: response to oxidative stress	7.24E-03
104	GO:0008219: cell death	7.70E-03
105	GO:0001708: cell fate specification	7.73E-03
106	GO:0098656: anion transmembrane transport	7.73E-03
107	GO:0090305: nucleic acid phosphodiester bond hydrolysis	7.73E-03
108	GO:0006783: heme biosynthetic process	7.73E-03
109	GO:0006811: ion transport	8.49E-03
110	GO:0006779: porphyrin-containing compound biosynthetic process	8.68E-03
111	GO:0048268: clathrin coat assembly	8.68E-03
112	GO:0009751: response to salicylic acid	8.89E-03
113	GO:0006351: transcription, DNA-templated	9.15E-03
114	GO:0010629: negative regulation of gene expression	9.69E-03
115	GO:0055062: phosphate ion homeostasis	9.69E-03
116	GO:0006782: protoporphyrinogen IX biosynthetic process	9.69E-03
117	GO:0019538: protein metabolic process	9.69E-03
118	GO:0045087: innate immune response	9.77E-03
119	GO:0006355: regulation of transcription, DNA-templated	1.02E-02
120	GO:0010015: root morphogenesis	1.07E-02
121	GO:0009698: phenylpropanoid metabolic process	1.07E-02
122	GO:0009682: induced systemic resistance	1.07E-02
123	GO:0009750: response to fructose	1.07E-02
124	GO:0006839: mitochondrial transport	1.12E-02
125	GO:0006897: endocytosis	1.16E-02
126	GO:0000266: mitochondrial fission	1.18E-02
127	GO:0010105: negative regulation of ethylene-activated signaling pathway	1.18E-02
128	GO:0009651: response to salt stress	1.24E-02
129	GO:0018107: peptidyl-threonine phosphorylation	1.29E-02
130	GO:0055046: microgametogenesis	1.29E-02
131	GO:0005986: sucrose biosynthetic process	1.29E-02
132	GO:0048467: gynoecium development	1.41E-02
133	GO:0002237: response to molecule of bacterial origin	1.41E-02
134	GO:0006855: drug transmembrane transport	1.48E-02
135	GO:0009969: xyloglucan biosynthetic process	1.53E-02
136	GO:0009901: anther dehiscence	1.53E-02
137	GO:0071732: cellular response to nitric oxide	1.53E-02
138	GO:0010030: positive regulation of seed germination	1.53E-02
139	GO:0070588: calcium ion transmembrane transport	1.53E-02
140	GO:0009626: plant-type hypersensitive response	2.15E-02
141	GO:0030245: cellulose catabolic process	2.17E-02
142	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	2.17E-02
143	GO:0030433: ubiquitin-dependent ERAD pathway	2.17E-02
144	GO:0009620: response to fungus	2.22E-02
145	GO:0009686: gibberellin biosynthetic process	2.31E-02
146	GO:0071369: cellular response to ethylene stimulus	2.31E-02
147	GO:0040007: growth	2.31E-02
148	GO:0001944: vasculature development	2.31E-02
149	GO:0042545: cell wall modification	2.36E-02
150	GO:0009624: response to nematode	2.43E-02
151	GO:0010089: xylem development	2.45E-02
152	GO:0048443: stamen development	2.45E-02
153	GO:0010091: trichome branching	2.45E-02
154	GO:0018105: peptidyl-serine phosphorylation	2.51E-02
155	GO:0009742: brassinosteroid mediated signaling pathway	2.58E-02
156	GO:0045892: negative regulation of transcription, DNA-templated	2.66E-02
157	GO:0048653: anther development	2.74E-02
158	GO:0000271: polysaccharide biosynthetic process	2.74E-02
159	GO:0048868: pollen tube development	2.89E-02
160	GO:0045489: pectin biosynthetic process	2.89E-02
161	GO:0006520: cellular amino acid metabolic process	2.89E-02
162	GO:0007165: signal transduction	2.90E-02
163	GO:0055072: iron ion homeostasis	3.20E-02
164	GO:0008654: phospholipid biosynthetic process	3.20E-02
165	GO:0002229: defense response to oomycetes	3.36E-02
166	GO:0009630: gravitropism	3.52E-02
167	GO:0009790: embryo development	3.55E-02
168	GO:1901657: glycosyl compound metabolic process	3.69E-02
169	GO:0071281: cellular response to iron ion	3.69E-02
170	GO:0009639: response to red or far red light	3.85E-02
171	GO:0016310: phosphorylation	3.91E-02
172	GO:0006810: transport	4.05E-02
173	GO:0051607: defense response to virus	4.19E-02
174	GO:0007623: circadian rhythm	4.19E-02
175	GO:0010150: leaf senescence	4.19E-02
176	GO:0045490: pectin catabolic process	4.19E-02
177	GO:0046686: response to cadmium ion	4.45E-02
178	GO:0009788: negative regulation of abscisic acid-activated signaling pathway	4.54E-02
179	GO:0010029: regulation of seed germination	4.54E-02
180	GO:0015995: chlorophyll biosynthetic process	4.90E-02
181	GO:0010468: regulation of gene expression	4.99E-02

Rank	GO Term	Adjusted P value
1	GO:0032442: phenylcoumaran benzylic ether reductase activity	0.00E+00
2	GO:0015215: nucleotide transmembrane transporter activity	0.00E+00
3	GO:0004698: calcium-dependent protein kinase C activity	0.00E+00
4	GO:0017048: Rho GTPase binding	0.00E+00
5	GO:0005522: profilin binding	0.00E+00
6	GO:0008419: RNA lariat debranching enzyme activity	0.00E+00
7	GO:0042171: lysophosphatidic acid acyltransferase activity	0.00E+00
8	GO:0016756: glutathione gamma-glutamylcysteinyltransferase activity	1.96E-07
9	GO:0016629: 12-oxophytodienoate reductase activity	5.06E-06
10	GO:0003840: gamma-glutamyltransferase activity	1.79E-05
11	GO:0036374: glutathione hydrolase activity	1.79E-05
12	GO:0016301: kinase activity	2.54E-05
13	GO:0010294: abscisic acid glucosyltransferase activity	1.11E-04
14	GO:0004675: transmembrane receptor protein serine/threonine kinase activity	3.19E-04
15	GO:0090422: thiamine pyrophosphate transporter activity	3.34E-04
16	GO:0046870: cadmium ion binding	3.34E-04
17	GO:0015446: ATPase-coupled arsenite transmembrane transporter activity	3.34E-04
18	GO:0004348: glucosylceramidase activity	3.34E-04
19	GO:0090440: abscisic acid transporter activity	3.34E-04
20	GO:0071992: phytochelatin transmembrane transporter activity	3.34E-04
21	GO:0043565: sequence-specific DNA binding	3.92E-04
22	GO:0010181: FMN binding	3.99E-04
23	GO:0004842: ubiquitin-protein transferase activity	5.02E-04
24	GO:0017040: ceramidase activity	7.29E-04
25	GO:0003839: gamma-glutamylcyclotransferase activity	7.29E-04
26	GO:0003958: NADPH-hemoprotein reductase activity	7.29E-04
27	GO:0015105: arsenite transmembrane transporter activity	7.29E-04
28	GO:0017022: myosin binding	7.29E-04
29	GO:0004103: choline kinase activity	7.29E-04
30	GO:0008883: glutamyl-tRNA reductase activity	7.29E-04
31	GO:0001047: core promoter binding	7.29E-04
32	GO:0019888: protein phosphatase regulator activity	1.07E-03
33	GO:0047325: inositol tetrakisphosphate 1-kinase activity	1.18E-03
34	GO:0001664: G-protein coupled receptor binding	1.18E-03
35	GO:0047274: galactinol-sucrose galactosyltransferase activity	1.18E-03
36	GO:0052726: inositol-1,3,4-trisphosphate 5-kinase activity	1.18E-03
37	GO:0031683: G-protein beta/gamma-subunit complex binding	1.18E-03
38	GO:0004383: guanylate cyclase activity	1.18E-03
39	GO:0016165: linoleate 13S-lipoxygenase activity	1.18E-03
40	GO:0016614: oxidoreductase activity, acting on CH-OH group of donors	1.28E-03
41	GO:0052725: inositol-1,3,4-trisphosphate 6-kinase activity	1.70E-03
42	GO:0052634: C-19 gibberellin 2-beta-dioxygenase activity	1.70E-03
43	GO:0001653: peptide receptor activity	1.70E-03
44	GO:0005524: ATP binding	1.81E-03
45	GO:0004674: protein serine/threonine kinase activity	2.23E-03
46	GO:0003841: 1-acylglycerol-3-phosphate O-acyltransferase activity	2.28E-03
47	GO:0070696: transmembrane receptor protein serine/threonine kinase binding	2.91E-03
48	GO:0009922: fatty acid elongase activity	2.91E-03
49	GO:0004623: phospholipase A2 activity	2.91E-03
50	GO:0030246: carbohydrate binding	3.19E-03
51	GO:0019137: thioglucosidase activity	3.60E-03
52	GO:0080043: quercetin 3-O-glucosyltransferase activity	4.04E-03
53	GO:0080044: quercetin 7-O-glucosyltransferase activity	4.04E-03
54	GO:0051020: GTPase binding	4.33E-03
55	GO:0102425: myricetin 3-O-glucosyltransferase activity	5.11E-03
56	GO:0102360: daphnetin 3-O-glucosyltransferase activity	5.11E-03
57	GO:0016621: cinnamoyl-CoA reductase activity	5.11E-03
58	GO:0015103: inorganic anion transmembrane transporter activity	5.11E-03
59	GO:0008143: poly(A) binding	5.11E-03
60	GO:0004672: protein kinase activity	5.27E-03
61	GO:0047893: flavonol 3-O-glucosyltransferase activity	5.94E-03
62	GO:0102483: scopolin beta-glucosidase activity	6.94E-03
63	GO:0044212: transcription regulatory region DNA binding	7.13E-03
64	GO:0015238: drug transmembrane transporter activity	8.09E-03
65	GO:0005096: GTPase activator activity	8.09E-03
66	GO:0003700: transcription factor activity, sequence-specific DNA binding	8.22E-03
67	GO:0015297: antiporter activity	8.58E-03
68	GO:0005215: transporter activity	8.67E-03
69	GO:0016308: 1-phosphatidylinositol-4-phosphate 5-kinase activity	9.69E-03
70	GO:0005545: 1-phosphatidylinositol binding	9.69E-03
71	GO:0004713: protein tyrosine kinase activity	9.69E-03
72	GO:0008194: UDP-glycosyltransferase activity	1.05E-02
73	GO:0008422: beta-glucosidase activity	1.07E-02
74	GO:0005262: calcium channel activity	1.29E-02
75	GO:0005516: calmodulin binding	1.29E-02
76	GO:0005315: inorganic phosphate transmembrane transporter activity	1.29E-02
77	GO:0102336: 3-oxo-arachidoyl-CoA synthase activity	1.65E-02
78	GO:0102337: 3-oxo-cerotoyl-CoA synthase activity	1.65E-02
79	GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity	1.65E-02
80	GO:0031625: ubiquitin protein ligase binding	1.89E-02
81	GO:0045330: aspartyl esterase activity	1.89E-02
82	GO:0051087: chaperone binding	1.90E-02
83	GO:0050660: flavin adenine dinucleotide binding	1.91E-02
84	GO:0008408: 3'-5' exonuclease activity	2.03E-02
85	GO:0035251: UDP-glucosyltransferase activity	2.03E-02
86	GO:0004707: MAP kinase activity	2.03E-02
87	GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity	2.17E-02
88	GO:0030599: pectinesterase activity	2.29E-02
89	GO:0003779: actin binding	2.36E-02
90	GO:0008514: organic anion transmembrane transporter activity	2.45E-02
91	GO:0005199: structural constituent of cell wall	2.89E-02
92	GO:0046873: metal ion transmembrane transporter activity	2.89E-02
93	GO:0030276: clathrin binding	2.89E-02
94	GO:0016758: transferase activity, transferring hexosyl groups	2.97E-02
95	GO:0050662: coenzyme binding	3.05E-02
96	GO:0051015: actin filament binding	3.69E-02
97	GO:0009055: electron carrier activity	3.70E-02
98	GO:0016722: oxidoreductase activity, oxidizing metal ions	4.02E-02
99	GO:0004702: signal transducer, downstream of receptor, with serine/threonine kinase activity	4.02E-02
100	GO:0015250: water channel activity	4.37E-02
101	GO:0004683: calmodulin-dependent protein kinase activity	4.90E-02
102	GO:0004004: ATP-dependent RNA helicase activity	4.90E-02

Rank	GO Term	Adjusted P value
1	GO:0005911: cell-cell junction	3.34E-04
2	GO:0070382: exocytic vesicle	3.34E-04
3	GO:0030133: transport vesicle	7.29E-04
4	GO:0000159: protein phosphatase type 2A complex	8.32E-04
5	GO:0009530: primary cell wall	1.18E-03
6	GO:0045177: apical part of cell	1.70E-03
7	GO:0030136: clathrin-coated vesicle	2.84E-03
8	GO:0031463: Cul3-RING ubiquitin ligase complex	3.60E-03
9	GO:0030173: integral component of Golgi membrane	4.33E-03
10	GO:0005886: plasma membrane	5.57E-03
11	GO:0005768: endosome	5.80E-03
12	GO:0010494: cytoplasmic stress granule	7.73E-03
13	GO:0016604: nuclear body	8.68E-03
14	GO:0009505: plant-type cell wall	1.11E-02
15	GO:0031902: late endosome membrane	1.16E-02
16	GO:0005938: cell cortex	1.29E-02
17	GO:0005905: clathrin-coated pit	2.03E-02
18	GO:0010008: endosome membrane	2.09E-02
19	GO:0005770: late endosome	2.89E-02
20	GO:0005743: mitochondrial inner membrane	3.10E-02
21	GO:0043231: intracellular membrane-bounded organelle	3.82E-02
22	GO:0032580: Golgi cisterna membrane	3.85E-02
23	GO:0005634: nucleus	4.61E-02
24	GO:0005622: intracellular	4.97E-02