co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT4G28210

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0032928: regulation of superoxide anion generation	0.00E+00
2	GO:0046085: adenosine metabolic process	0.00E+00
3	GO:0006720: isoprenoid metabolic process	0.00E+00
4	GO:0046040: IMP metabolic process	0.00E+00
5	GO:0048870: cell motility	0.00E+00
6	GO:0009249: protein lipoylation	0.00E+00
7	GO:0009583: detection of light stimulus	0.00E+00
8	GO:0006167: AMP biosynthetic process	0.00E+00
9	GO:0009106: lipoate metabolic process	0.00E+00
10	GO:0036172: thiamine salvage	0.00E+00
11	GO:0045747: positive regulation of Notch signaling pathway	0.00E+00
12	GO:0071000: response to magnetism	0.00E+00
13	GO:0046460: neutral lipid biosynthetic process	0.00E+00
14	GO:0080064: 4,4-dimethyl-9beta,19-cyclopropylsterol oxidation	2.14E-06
15	GO:0010117: photoprotection	5.28E-05
16	GO:0034971: histone H3-R17 methylation	2.13E-04
17	GO:0072387: flavin adenine dinucleotide metabolic process	2.13E-04
18	GO:0034970: histone H3-R2 methylation	2.13E-04
19	GO:0016487: farnesol metabolic process	2.13E-04
20	GO:0016031: tRNA import into mitochondrion	2.13E-04
21	GO:0034972: histone H3-R26 methylation	2.13E-04
22	GO:0010617: circadian regulation of calcium ion oscillation	4.76E-04
23	GO:0007163: establishment or maintenance of cell polarity	4.76E-04
24	GO:0099402: plant organ development	4.76E-04
25	GO:0009220: pyrimidine ribonucleotide biosynthetic process	4.76E-04
26	GO:0016122: xanthophyll metabolic process	4.76E-04
27	GO:0019919: peptidyl-arginine methylation, to asymmetrical-dimethyl arginine	4.76E-04
28	GO:0010343: singlet oxygen-mediated programmed cell death	4.76E-04
29	GO:1901529: positive regulation of anion channel activity	4.76E-04
30	GO:0044208: 'de novo' AMP biosynthetic process	4.76E-04
31	GO:2000071: regulation of defense response by callose deposition	4.76E-04
32	GO:0071492: cellular response to UV-A	7.74E-04
33	GO:0010476: gibberellin mediated signaling pathway	7.74E-04
34	GO:0010325: raffinose family oligosaccharide biosynthetic process	7.74E-04
35	GO:0000394: RNA splicing, via endonucleolytic cleavage and ligation	7.74E-04
36	GO:1902448: positive regulation of shade avoidance	7.74E-04
37	GO:1901672: positive regulation of systemic acquired resistance	7.74E-04
38	GO:1901332: negative regulation of lateral root development	1.10E-03
39	GO:0009152: purine ribonucleotide biosynthetic process	1.10E-03
40	GO:0009399: nitrogen fixation	1.10E-03
41	GO:0033014: tetrapyrrole biosynthetic process	1.10E-03
42	GO:0044205: 'de novo' UMP biosynthetic process	1.47E-03
43	GO:1902347: response to strigolactone	1.47E-03
44	GO:0034613: cellular protein localization	1.47E-03
45	GO:0006542: glutamine biosynthetic process	1.47E-03
46	GO:1900864: mitochondrial RNA modification	1.47E-03
47	GO:0071486: cellular response to high light intensity	1.47E-03
48	GO:0009939: positive regulation of gibberellic acid mediated signaling pathway	1.47E-03
49	GO:0042274: ribosomal small subunit biogenesis	1.47E-03
50	GO:0009765: photosynthesis, light harvesting	1.47E-03
51	GO:0006221: pyrimidine nucleotide biosynthetic process	1.47E-03
52	GO:0008295: spermidine biosynthetic process	1.47E-03
53	GO:0010118: stomatal movement	1.61E-03
54	GO:0030041: actin filament polymerization	1.87E-03
55	GO:0046283: anthocyanin-containing compound metabolic process	1.87E-03
56	GO:0009229: thiamine diphosphate biosynthetic process	1.87E-03
57	GO:0009107: lipoate biosynthetic process	1.87E-03
58	GO:0016120: carotene biosynthetic process	1.87E-03
59	GO:0006544: glycine metabolic process	1.87E-03
60	GO:0042793: transcription from plastid promoter	2.31E-03
61	GO:0010190: cytochrome b6f complex assembly	2.31E-03
62	GO:0033365: protein localization to organelle	2.31E-03
63	GO:0009117: nucleotide metabolic process	2.31E-03
64	GO:0006574: valine catabolic process	2.31E-03
65	GO:0006563: L-serine metabolic process	2.31E-03
66	GO:0010304: PSII associated light-harvesting complex II catabolic process	2.31E-03
67	GO:0016070: RNA metabolic process	2.31E-03
68	GO:0031053: primary miRNA processing	2.31E-03
69	GO:1901371: regulation of leaf morphogenesis	2.31E-03
70	GO:0007035: vacuolar acidification	2.31E-03
71	GO:0009228: thiamine biosynthetic process	2.31E-03
72	GO:0060918: auxin transport	2.31E-03
73	GO:0010090: trichome morphogenesis	2.43E-03
74	GO:0048444: floral organ morphogenesis	2.77E-03
75	GO:0010310: regulation of hydrogen peroxide metabolic process	2.77E-03
76	GO:0010244: response to low fluence blue light stimulus by blue low-fluence system	2.77E-03
77	GO:0034389: lipid particle organization	2.77E-03
78	GO:0006120: mitochondrial electron transport, NADH to ubiquinone	2.77E-03
79	GO:0016126: sterol biosynthetic process	3.07E-03
80	GO:0051510: regulation of unidimensional cell growth	3.26E-03
81	GO:0006207: 'de novo' pyrimidine nucleobase biosynthetic process	3.26E-03
82	GO:0055114: oxidation-reduction process	3.37E-03
83	GO:0009704: de-etiolation	3.78E-03
84	GO:0045010: actin nucleation	3.78E-03
85	GO:0045292: mRNA cis splicing, via spliceosome	3.78E-03
86	GO:0009787: regulation of abscisic acid-activated signaling pathway	3.78E-03
87	GO:0010100: negative regulation of photomorphogenesis	4.33E-03
88	GO:0032544: plastid translation	4.33E-03
89	GO:0022900: electron transport chain	4.33E-03
90	GO:0019430: removal of superoxide radicals	4.33E-03
91	GO:0006783: heme biosynthetic process	4.90E-03
92	GO:0009056: catabolic process	4.90E-03
93	GO:0000902: cell morphogenesis	4.90E-03
94	GO:0098656: anion transmembrane transport	4.90E-03
95	GO:0009245: lipid A biosynthetic process	4.90E-03
96	GO:0019432: triglyceride biosynthetic process	4.90E-03
97	GO:1900426: positive regulation of defense response to bacterium	5.50E-03
98	GO:0009638: phototropism	5.50E-03
99	GO:0006779: porphyrin-containing compound biosynthetic process	5.50E-03
100	GO:0035999: tetrahydrofolate interconversion	5.50E-03
101	GO:1900865: chloroplast RNA modification	5.50E-03
102	GO:0009688: abscisic acid biosynthetic process	6.12E-03
103	GO:0009682: induced systemic resistance	6.77E-03
104	GO:0010075: regulation of meristem growth	8.13E-03
105	GO:0009785: blue light signaling pathway	8.13E-03
106	GO:0048440: carpel development	8.84E-03
107	GO:0006071: glycerol metabolic process	1.03E-02
108	GO:0000162: tryptophan biosynthetic process	1.03E-02
109	GO:0034976: response to endoplasmic reticulum stress	1.03E-02
110	GO:2000377: regulation of reactive oxygen species metabolic process	1.11E-02
111	GO:0009116: nucleoside metabolic process	1.11E-02
112	GO:2000022: regulation of jasmonic acid mediated signaling pathway	1.36E-02
113	GO:0007005: mitochondrion organization	1.36E-02
114	GO:0016226: iron-sulfur cluster assembly	1.36E-02
115	GO:0006012: galactose metabolic process	1.45E-02
116	GO:0006281: DNA repair	1.48E-02
117	GO:0016117: carotenoid biosynthetic process	1.62E-02
118	GO:0015991: ATP hydrolysis coupled proton transport	1.72E-02
119	GO:0042752: regulation of circadian rhythm	1.91E-02
120	GO:0009646: response to absence of light	1.91E-02
121	GO:0008654: phospholipid biosynthetic process	2.00E-02
122	GO:0009851: auxin biosynthetic process	2.00E-02
123	GO:0080156: mitochondrial mRNA modification	2.10E-02
124	GO:0002229: defense response to oomycetes	2.10E-02
125	GO:0030163: protein catabolic process	2.31E-02
126	GO:0042128: nitrate assimilation	2.95E-02
127	GO:0006950: response to stress	3.07E-02
128	GO:0018298: protein-chromophore linkage	3.30E-02
129	GO:0010218: response to far red light	3.54E-02
130	GO:0010043: response to zinc ion	3.66E-02
131	GO:0048527: lateral root development	3.66E-02
132	GO:0009637: response to blue light	3.91E-02
133	GO:0009853: photorespiration	3.91E-02
134	GO:0009867: jasmonic acid mediated signaling pathway	3.91E-02
135	GO:0046777: protein autophosphorylation	4.45E-02
136	GO:0010114: response to red light	4.68E-02
137	GO:0009640: photomorphogenesis	4.68E-02
138	GO:0008283: cell proliferation	4.68E-02
139	GO:0009644: response to high light intensity	4.94E-02

Rank	GO Term	Adjusted P value
1	GO:0004588: orotate phosphoribosyltransferase activity	0.00E+00
2	GO:0004590: orotidine-5'-phosphate decarboxylase activity	0.00E+00
3	GO:0052669: CTP:2-trans,-6-trans-farnesol kinase activity	0.00E+00
4	GO:0004417: hydroxyethylthiazole kinase activity	0.00E+00
5	GO:0052670: geraniol kinase activity	0.00E+00
6	GO:0052668: farnesol kinase activity	0.00E+00
7	GO:0033819: lipoyl(octanoyl) transferase activity	0.00E+00
8	GO:0004019: adenylosuccinate synthase activity	0.00E+00
9	GO:0045436: lycopene beta cyclase activity	0.00E+00
10	GO:0052671: geranylgeraniol kinase activity	0.00E+00
11	GO:0004848: ureidoglycolate hydrolase activity	7.85E-06
12	GO:0000254: C-4 methylsterol oxidase activity	1.79E-05
13	GO:0033984: indole-3-glycerol-phosphate lyase activity	2.13E-04
14	GO:0004325: ferrochelatase activity	2.13E-04
15	GO:0071949: FAD binding	2.74E-04
16	GO:0016277: [myelin basic protein]-arginine N-methyltransferase activity	4.76E-04
17	GO:0017118: lipoyltransferase activity	4.76E-04
18	GO:0035242: protein-arginine omega-N asymmetric methyltransferase activity	4.76E-04
19	GO:0010331: gibberellin binding	4.76E-04
20	GO:0016415: octanoyltransferase activity	4.76E-04
21	GO:0004766: spermidine synthase activity	4.76E-04
22	GO:0004046: aminoacylase activity	4.76E-04
23	GO:0000179: rRNA (adenine-N6,N6-)-dimethyltransferase activity	4.76E-04
24	GO:0035241: protein-arginine omega-N monomethyltransferase activity	4.76E-04
25	GO:0003824: catalytic activity	6.57E-04
26	GO:0032403: protein complex binding	7.74E-04
27	GO:0008649: rRNA methyltransferase activity	7.74E-04
28	GO:0017176: phosphatidylinositol N-acetylglucosaminyltransferase activity	7.74E-04
29	GO:0008469: histone-arginine N-methyltransferase activity	7.74E-04
30	GO:0008442: 3-hydroxyisobutyrate dehydrogenase activity	7.74E-04
31	GO:0016787: hydrolase activity	9.00E-04
32	GO:0016656: monodehydroascorbate reductase (NADH) activity	1.10E-03
33	GO:0000339: RNA cap binding	1.10E-03
34	GO:0009882: blue light photoreceptor activity	1.10E-03
35	GO:0035529: NADH pyrophosphatase activity	1.10E-03
36	GO:0016616: oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor	1.47E-03
37	GO:0004834: tryptophan synthase activity	1.47E-03
38	GO:0004356: glutamate-ammonia ligase activity	1.87E-03
39	GO:0004372: glycine hydroxymethyltransferase activity	1.87E-03
40	GO:0031177: phosphopantetheine binding	2.31E-03
41	GO:0004605: phosphatidate cytidylyltransferase activity	2.31E-03
42	GO:0004784: superoxide dismutase activity	2.31E-03
43	GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity	2.77E-03
44	GO:0000035: acyl binding	2.77E-03
45	GO:0004144: diacylglycerol O-acyltransferase activity	2.77E-03
46	GO:0070300: phosphatidic acid binding	2.77E-03
47	GO:0008143: poly(A) binding	3.26E-03
48	GO:0016621: cinnamoyl-CoA reductase activity	3.26E-03
49	GO:0000036: ACP phosphopantetheine attachment site binding involved in fatty acid biosynthetic process	3.78E-03
50	GO:0004034: aldose 1-epimerase activity	3.78E-03
51	GO:0015078: hydrogen ion transmembrane transporter activity	4.33E-03
52	GO:0008047: enzyme activator activity	6.12E-03
53	GO:0008168: methyltransferase activity	6.55E-03
54	GO:0046961: proton-transporting ATPase activity, rotational mechanism	6.77E-03
55	GO:0051287: NAD binding	7.91E-03
56	GO:0005315: inorganic phosphate transmembrane transporter activity	8.13E-03
57	GO:0031072: heat shock protein binding	8.13E-03
58	GO:0015266: protein channel activity	8.13E-03
59	GO:0003887: DNA-directed DNA polymerase activity	1.03E-02
60	GO:0016491: oxidoreductase activity	1.10E-02
61	GO:0004176: ATP-dependent peptidase activity	1.27E-02
62	GO:0004386: helicase activity	1.37E-02
63	GO:0008514: organic anion transmembrane transporter activity	1.53E-02
64	GO:0003756: protein disulfide isomerase activity	1.53E-02
65	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	1.62E-02
66	GO:0003713: transcription coactivator activity	1.81E-02
67	GO:0008080: N-acetyltransferase activity	1.81E-02
68	GO:0003723: RNA binding	1.87E-02
69	GO:0050662: coenzyme binding	1.91E-02
70	GO:0016853: isomerase activity	1.91E-02
71	GO:0048038: quinone binding	2.10E-02
72	GO:0008237: metallopeptidase activity	2.52E-02
73	GO:0042802: identical protein binding	2.77E-02
74	GO:0016168: chlorophyll binding	2.84E-02
75	GO:0008375: acetylglucosaminyltransferase activity	2.95E-02
76	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	3.30E-02
77	GO:0004222: metalloendopeptidase activity	3.54E-02
78	GO:0050897: cobalt ion binding	3.66E-02
79	GO:0003697: single-stranded DNA binding	3.91E-02
80	GO:0051537: 2 iron, 2 sulfur cluster binding	4.94E-02
81	GO:0043621: protein self-association	4.94E-02

Rank	GO Term	Adjusted P value
1	GO:0009507: chloroplast	1.68E-16
2	GO:0009535: chloroplast thylakoid membrane	7.58E-05
3	GO:0005845: mRNA cap binding complex	2.13E-04
4	GO:0005846: nuclear cap binding complex	4.76E-04
5	GO:0009570: chloroplast stroma	7.22E-04
6	GO:0016605: PML body	7.74E-04
7	GO:0009536: plastid	8.38E-04
8	GO:0042646: plastid nucleoid	1.10E-03
9	GO:0009517: PSII associated light-harvesting complex II	1.47E-03
10	GO:0033179: proton-transporting V-type ATPase, V0 domain	1.47E-03
11	GO:0031969: chloroplast membrane	1.85E-03
12	GO:0000220: vacuolar proton-transporting V-type ATPase, V0 domain	1.87E-03
13	GO:0055035: plastid thylakoid membrane	1.87E-03
14	GO:0031209: SCAR complex	2.31E-03
15	GO:0009295: nucleoid	2.74E-03
16	GO:0005811: lipid particle	4.33E-03
17	GO:0042644: chloroplast nucleoid	4.90E-03
18	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	4.90E-03
19	GO:0016604: nuclear body	5.50E-03
20	GO:0009508: plastid chromosome	8.13E-03
21	GO:0031966: mitochondrial membrane	8.20E-03
22	GO:0005747: mitochondrial respiratory chain complex I	1.08E-02
23	GO:0042651: thylakoid membrane	1.19E-02
24	GO:0045271: respiratory chain complex I	1.19E-02
25	GO:0070469: respiratory chain	1.19E-02
26	GO:0015935: small ribosomal subunit	1.27E-02
27	GO:0005744: mitochondrial inner membrane presequence translocase complex	1.53E-02
28	GO:0005829: cytosol	1.65E-02
29	GO:0009523: photosystem II	2.00E-02
30	GO:0071944: cell periphery	2.31E-02
31	GO:0005840: ribosome	2.47E-02
32	GO:0005778: peroxisomal membrane	2.52E-02
33	GO:0009941: chloroplast envelope	3.82E-02
34	GO:0005737: cytoplasm	4.45E-02