Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT4G28080

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0010323: negative regulation of isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway0.00E+00
2GO:1901918: negative regulation of exoribonuclease activity0.00E+00
3GO:0098586: cellular response to virus0.00E+00
4GO:0017009: protein-phycocyanobilin linkage0.00E+00
5GO:0042821: pyridoxal biosynthetic process0.00E+00
6GO:0042820: vitamin B6 catabolic process0.00E+00
7GO:0015882: L-ascorbic acid transport0.00E+00
8GO:0019265: glycine biosynthetic process, by transamination of glyoxylate0.00E+00
9GO:0051246: regulation of protein metabolic process0.00E+00
10GO:1905157: positive regulation of photosynthesis0.00E+00
11GO:1901401: regulation of tetrapyrrole metabolic process0.00E+00
12GO:0009658: chloroplast organization1.82E-07
13GO:0009767: photosynthetic electron transport chain4.95E-07
14GO:0015979: photosynthesis7.06E-07
15GO:0009643: photosynthetic acclimation8.17E-07
16GO:0015995: chlorophyll biosynthetic process1.33E-06
17GO:0018298: protein-chromophore linkage1.76E-06
18GO:0080005: photosystem stoichiometry adjustment2.23E-06
19GO:0048564: photosystem I assembly3.56E-06
20GO:0009773: photosynthetic electron transport in photosystem I1.68E-05
21GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly1.87E-05
22GO:0009902: chloroplast relocation3.41E-05
23GO:0016120: carotene biosynthetic process5.47E-05
24GO:0016123: xanthophyll biosynthetic process5.47E-05
25GO:0009735: response to cytokinin8.00E-05
26GO:0010190: cytochrome b6f complex assembly8.04E-05
27GO:0009644: response to high light intensity1.17E-04
28GO:0055114: oxidation-reduction process1.49E-04
29GO:0010362: negative regulation of anion channel activity by blue light2.18E-04
30GO:0009443: pyridoxal 5'-phosphate salvage2.18E-04
31GO:0031426: polycistronic mRNA processing2.18E-04
32GO:0033506: glucosinolate biosynthetic process from homomethionine2.18E-04
33GO:1904966: positive regulation of vitamin E biosynthetic process2.18E-04
34GO:0010322: regulation of isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway2.18E-04
35GO:0071277: cellular response to calcium ion2.18E-04
36GO:1904964: positive regulation of phytol biosynthetic process2.18E-04
37GO:0042371: vitamin K biosynthetic process2.18E-04
38GO:0071461: cellular response to redox state2.18E-04
39GO:0006436: tryptophanyl-tRNA aminoacylation2.18E-04
40GO:0010028: xanthophyll cycle2.18E-04
41GO:0006419: alanyl-tRNA aminoacylation2.18E-04
42GO:0009657: plastid organization2.33E-04
43GO:0046741: transport of virus in host, tissue to tissue4.86E-04
44GO:0042853: L-alanine catabolic process4.86E-04
45GO:0009915: phloem sucrose loading4.86E-04
46GO:1902326: positive regulation of chlorophyll biosynthetic process4.86E-04
47GO:2000030: regulation of response to red or far red light4.86E-04
48GO:0042548: regulation of photosynthesis, light reaction4.86E-04
49GO:0034755: iron ion transmembrane transport4.86E-04
50GO:0006435: threonyl-tRNA aminoacylation4.86E-04
51GO:0000256: allantoin catabolic process4.86E-04
52GO:0080183: response to photooxidative stress4.86E-04
53GO:0016122: xanthophyll metabolic process4.86E-04
54GO:0010207: photosystem II assembly6.66E-04
55GO:0019253: reductive pentose-phosphate cycle6.66E-04
56GO:0090391: granum assembly7.90E-04
57GO:0010136: ureide catabolic process7.90E-04
58GO:0006013: mannose metabolic process7.90E-04
59GO:0006696: ergosterol biosynthetic process7.90E-04
60GO:0007017: microtubule-based process1.01E-03
61GO:0009768: photosynthesis, light harvesting in photosystem I1.01E-03
62GO:0090307: mitotic spindle assembly1.13E-03
63GO:0006809: nitric oxide biosynthetic process1.13E-03
64GO:0006145: purine nucleobase catabolic process1.13E-03
65GO:0051415: interphase microtubule nucleation by interphase microtubule organizing center1.13E-03
66GO:0043572: plastid fission1.13E-03
67GO:2001141: regulation of RNA biosynthetic process1.13E-03
68GO:0071484: cellular response to light intensity1.13E-03
69GO:0010239: chloroplast mRNA processing1.13E-03
70GO:0006364: rRNA processing1.31E-03
71GO:0015994: chlorophyll metabolic process1.50E-03
72GO:0031122: cytoplasmic microtubule organization1.50E-03
73GO:0006021: inositol biosynthetic process1.50E-03
74GO:0010021: amylopectin biosynthetic process1.50E-03
75GO:0009765: photosynthesis, light harvesting1.50E-03
76GO:0016117: carotenoid biosynthetic process1.54E-03
77GO:0010117: photoprotection1.91E-03
78GO:0043097: pyrimidine nucleoside salvage1.91E-03
79GO:0009791: post-embryonic development2.06E-03
80GO:0010193: response to ozone2.20E-03
81GO:0006206: pyrimidine nucleobase metabolic process2.35E-03
82GO:0046855: inositol phosphate dephosphorylation2.35E-03
83GO:0050665: hydrogen peroxide biosynthetic process2.35E-03
84GO:0042549: photosystem II stabilization2.35E-03
85GO:0010189: vitamin E biosynthetic process2.83E-03
86GO:0009854: oxidative photosynthetic carbon pathway2.83E-03
87GO:0071470: cellular response to osmotic stress2.83E-03
88GO:0009058: biosynthetic process2.91E-03
89GO:0010027: thylakoid membrane organization3.17E-03
90GO:0010196: nonphotochemical quenching3.33E-03
91GO:0009645: response to low light intensity stimulus3.33E-03
92GO:0006400: tRNA modification3.33E-03
93GO:0006401: RNA catabolic process3.33E-03
94GO:0009772: photosynthetic electron transport in photosystem II3.33E-03
95GO:0009409: response to cold3.75E-03
96GO:0006402: mRNA catabolic process3.86E-03
97GO:0009642: response to light intensity3.86E-03
98GO:0009704: de-etiolation3.86E-03
99GO:0007623: circadian rhythm4.10E-03
100GO:0006810: transport4.40E-03
101GO:0032544: plastid translation4.42E-03
102GO:0071482: cellular response to light stimulus4.42E-03
103GO:0009821: alkaloid biosynthetic process5.00E-03
104GO:0090305: nucleic acid phosphodiester bond hydrolysis5.00E-03
105GO:0090333: regulation of stomatal closure5.00E-03
106GO:0048507: meristem development5.00E-03
107GO:0006783: heme biosynthetic process5.00E-03
108GO:0000373: Group II intron splicing5.00E-03
109GO:0098656: anion transmembrane transport5.00E-03
110GO:0009637: response to blue light5.22E-03
111GO:0009853: photorespiration5.22E-03
112GO:0009098: leucine biosynthetic process5.62E-03
113GO:0031425: chloroplast RNA processing5.62E-03
114GO:0009638: phototropism5.62E-03
115GO:0006779: porphyrin-containing compound biosynthetic process5.62E-03
116GO:0006782: protoporphyrinogen IX biosynthetic process6.25E-03
117GO:0045036: protein targeting to chloroplast6.25E-03
118GO:0006259: DNA metabolic process6.25E-03
119GO:0010114: response to red light6.73E-03
120GO:0006265: DNA topological change6.91E-03
121GO:0006879: cellular iron ion homeostasis6.91E-03
122GO:0006352: DNA-templated transcription, initiation6.91E-03
123GO:0018119: peptidyl-cysteine S-nitrosylation6.91E-03
124GO:0016485: protein processing6.91E-03
125GO:0006790: sulfur compound metabolic process7.60E-03
126GO:0006006: glucose metabolic process8.30E-03
127GO:0009725: response to hormone8.30E-03
128GO:0005986: sucrose biosynthetic process8.30E-03
129GO:0042538: hyperosmotic salinity response8.45E-03
130GO:0010020: chloroplast fission9.03E-03
131GO:0009266: response to temperature stimulus9.03E-03
132GO:0080167: response to karrikin9.40E-03
133GO:0019853: L-ascorbic acid biosynthetic process9.79E-03
134GO:0046854: phosphatidylinositol phosphorylation9.79E-03
135GO:0009793: embryo development ending in seed dormancy1.07E-02
136GO:0080147: root hair cell development1.14E-02
137GO:0006418: tRNA aminoacylation for protein translation1.22E-02
138GO:0006825: copper ion transport1.22E-02
139GO:0051302: regulation of cell division1.22E-02
140GO:0016226: iron-sulfur cluster assembly1.39E-02
141GO:0080092: regulation of pollen tube growth1.39E-02
142GO:0009306: protein secretion1.57E-02
143GO:0008033: tRNA processing1.75E-02
144GO:0010118: stomatal movement1.75E-02
145GO:0006606: protein import into nucleus1.75E-02
146GO:0015986: ATP synthesis coupled proton transport1.95E-02
147GO:0007059: chromosome segregation1.95E-02
148GO:0019252: starch biosynthetic process2.05E-02
149GO:0006413: translational initiation2.09E-02
150GO:0000302: response to reactive oxygen species2.15E-02
151GO:0019761: glucosinolate biosynthetic process2.25E-02
152GO:0010286: heat acclimation2.57E-02
153GO:0010468: regulation of gene expression2.68E-02
154GO:0009816: defense response to bacterium, incompatible interaction2.91E-02
155GO:0042128: nitrate assimilation3.02E-02
156GO:0009416: response to light stimulus3.17E-02
157GO:0009817: defense response to fungus, incompatible interaction3.37E-02
158GO:0048481: plant ovule development3.37E-02
159GO:0000160: phosphorelay signal transduction system3.49E-02
160GO:0009407: toxin catabolic process3.62E-02
161GO:0006811: ion transport3.62E-02
162GO:0010218: response to far red light3.62E-02
163GO:0007568: aging3.74E-02
164GO:0034599: cellular response to oxidative stress4.12E-02
165GO:0055085: transmembrane transport4.25E-02
166GO:0006631: fatty acid metabolic process4.51E-02
167GO:0046777: protein autophosphorylation4.59E-02
168GO:0046686: response to cadmium ion4.60E-02
169GO:0009744: response to sucrose4.78E-02
RankGO TermAdjusted P value
1GO:0050236: pyridoxine:NADP 4-dehydrogenase activity0.00E+00
2GO:0071522: ureidoglycine aminohydrolase activity0.00E+00
3GO:0009976: tocopherol cyclase activity0.00E+00
4GO:0045435: lycopene epsilon cyclase activity0.00E+00
5GO:0004760: serine-pyruvate transaminase activity0.00E+00
6GO:0008974: phosphoribulokinase activity0.00E+00
7GO:0015229: L-ascorbic acid transporter activity0.00E+00
8GO:0046905: phytoene synthase activity0.00E+00
9GO:0048529: magnesium-protoporphyrin IX monomethyl ester (oxidative) cyclase activity0.00E+00
10GO:0008935: 1,4-dihydroxy-2-naphthoyl-CoA synthase activity0.00E+00
11GO:0008942: nitrite reductase [NAD(P)H] activity0.00E+00
12GO:0035798: 2-alkenal reductase (NADP+) activity0.00E+00
13GO:0016767: geranylgeranyl-diphosphate geranylgeranyltransferase activity0.00E+00
14GO:0050281: serine-glyoxylate transaminase activity0.00E+00
15GO:0016168: chlorophyll binding2.63E-05
16GO:0008453: alanine-glyoxylate transaminase activity3.41E-05
17GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor3.41E-05
18GO:0019899: enzyme binding1.47E-04
19GO:0048038: quinone binding2.10E-04
20GO:0047958: glycine:2-oxoglutarate aminotransferase activity2.18E-04
21GO:0004813: alanine-tRNA ligase activity2.18E-04
22GO:0004008: copper-exporting ATPase activity2.18E-04
23GO:0080105: 6-methylthiopropyl glucosinolate S-oxygenase activity2.18E-04
24GO:0051996: squalene synthase activity2.18E-04
25GO:0004830: tryptophan-tRNA ligase activity2.18E-04
26GO:0030941: chloroplast targeting sequence binding2.18E-04
27GO:0004654: polyribonucleotide nucleotidyltransferase activity2.18E-04
28GO:0010347: L-galactose-1-phosphate phosphatase activity2.18E-04
29GO:0035671: enone reductase activity2.18E-04
30GO:0004451: isocitrate lyase activity2.18E-04
31GO:0005089: Rho guanyl-nucleotide exchange factor activity4.56E-04
32GO:0080104: 5-methylthiopropyl glucosinolate S-oxygenase activity4.86E-04
33GO:0008934: inositol monophosphate 1-phosphatase activity4.86E-04
34GO:0052833: inositol monophosphate 4-phosphatase activity4.86E-04
35GO:0004829: threonine-tRNA ligase activity4.86E-04
36GO:0080106: 7-methylthiopropyl glucosinolate S-oxygenase activity4.86E-04
37GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity4.86E-04
38GO:0004310: farnesyl-diphosphate farnesyltransferase activity4.86E-04
39GO:0003862: 3-isopropylmalate dehydrogenase activity4.86E-04
40GO:0008883: glutamyl-tRNA reductase activity4.86E-04
41GO:0080102: 3-methylthiopropyl glucosinolate S-oxygenase activity4.86E-04
42GO:0052832: inositol monophosphate 3-phosphatase activity4.86E-04
43GO:0033201: alpha-1,4-glucan synthase activity4.86E-04
44GO:0050661: NADP binding7.78E-04
45GO:0004373: glycogen (starch) synthase activity7.90E-04
46GO:0003913: DNA photolyase activity7.90E-04
47GO:0032947: protein complex scaffold7.90E-04
48GO:0004148: dihydrolipoyl dehydrogenase activity7.90E-04
49GO:0050307: sucrose-phosphate phosphatase activity7.90E-04
50GO:0080103: 4-methylthiopropyl glucosinolate S-oxygenase activity7.90E-04
51GO:0070402: NADPH binding7.90E-04
52GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor7.90E-04
53GO:0010277: chlorophyllide a oxygenase [overall] activity7.90E-04
54GO:0031409: pigment binding8.29E-04
55GO:0051537: 2 iron, 2 sulfur cluster binding9.99E-04
56GO:0016491: oxidoreductase activity1.05E-03
57GO:0048027: mRNA 5'-UTR binding1.13E-03
58GO:0004021: L-alanine:2-oxoglutarate aminotransferase activity1.13E-03
59GO:0080107: 8-methylthiopropyl glucosinolate S-oxygenase activity1.13E-03
60GO:0022890: inorganic cation transmembrane transporter activity1.13E-03
61GO:0052852: very-long-chain-(S)-2-hydroxy-acid oxidase activity1.13E-03
62GO:0016851: magnesium chelatase activity1.13E-03
63GO:0009882: blue light photoreceptor activity1.13E-03
64GO:0052853: long-chain-(S)-2-hydroxy-long-chain-acid oxidase activity1.13E-03
65GO:0052854: medium-chain-(S)-2-hydroxy-acid oxidase activity1.13E-03
66GO:0022891: substrate-specific transmembrane transporter activity1.31E-03
67GO:0016987: sigma factor activity1.50E-03
68GO:0043015: gamma-tubulin binding1.50E-03
69GO:0009011: starch synthase activity1.50E-03
70GO:0043495: protein anchor1.50E-03
71GO:0016616: oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor1.50E-03
72GO:0008891: glycolate oxidase activity1.50E-03
73GO:0001053: plastid sigma factor activity1.50E-03
74GO:0051861: glycolipid binding1.50E-03
75GO:0008080: N-acetyltransferase activity1.78E-03
76GO:0051011: microtubule minus-end binding1.91E-03
77GO:0010181: FMN binding1.92E-03
78GO:0016853: isomerase activity1.92E-03
79GO:0000293: ferric-chelate reductase activity2.35E-03
80GO:0015631: tubulin binding2.83E-03
81GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity2.83E-03
82GO:0004849: uridine kinase activity2.83E-03
83GO:0004559: alpha-mannosidase activity2.83E-03
84GO:0004033: aldo-keto reductase (NADP) activity3.86E-03
85GO:0005375: copper ion transmembrane transporter activity4.42E-03
86GO:0003918: DNA topoisomerase type II (ATP-hydrolyzing) activity4.42E-03
87GO:0005381: iron ion transmembrane transporter activity5.62E-03
88GO:0016844: strictosidine synthase activity5.62E-03
89GO:0015386: potassium:proton antiporter activity6.91E-03
90GO:0000049: tRNA binding7.60E-03
91GO:0051287: NAD binding8.15E-03
92GO:0000175: 3'-5'-exoribonuclease activity8.30E-03
93GO:0015662: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism8.30E-03
94GO:0005315: inorganic phosphate transmembrane transporter activity8.30E-03
95GO:0031072: heat shock protein binding8.30E-03
96GO:0000155: phosphorelay sensor kinase activity8.30E-03
97GO:0051536: iron-sulfur cluster binding1.14E-02
98GO:0015079: potassium ion transmembrane transporter activity1.22E-02
99GO:0004499: N,N-dimethylaniline monooxygenase activity1.57E-02
100GO:0003727: single-stranded RNA binding1.57E-02
101GO:0008514: organic anion transmembrane transporter activity1.57E-02
102GO:0004812: aminoacyl-tRNA ligase activity1.66E-02
103GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen1.67E-02
104GO:0009055: electron carrier activity1.69E-02
105GO:0046933: proton-transporting ATP synthase activity, rotational mechanism1.85E-02
106GO:0015299: solute:proton antiporter activity1.95E-02
107GO:0008565: protein transporter activity1.95E-02
108GO:0004872: receptor activity2.05E-02
109GO:0004518: nuclease activity2.25E-02
110GO:0005200: structural constituent of cytoskeleton2.57E-02
111GO:0016887: ATPase activity2.68E-02
112GO:0016597: amino acid binding2.68E-02
113GO:0042802: identical protein binding2.85E-02
114GO:0000287: magnesium ion binding3.41E-02
115GO:0050897: cobalt ion binding3.74E-02
116GO:0003746: translation elongation factor activity3.99E-02
117GO:0050660: flavin adenine dinucleotide binding4.01E-02
118GO:0004364: glutathione transferase activity4.65E-02
119GO:0046872: metal ion binding4.99E-02
RankGO TermAdjusted P value
1GO:0009507: chloroplast3.09E-47
2GO:0009535: chloroplast thylakoid membrane2.28E-34
3GO:0009570: chloroplast stroma1.23E-16
4GO:0009941: chloroplast envelope3.56E-15
5GO:0009534: chloroplast thylakoid3.70E-14
6GO:0009579: thylakoid1.03E-11
7GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)7.91E-08
8GO:0010287: plastoglobule3.28E-06
9GO:0031969: chloroplast membrane5.72E-06
10GO:0009523: photosystem II9.38E-06
11GO:0030286: dynein complex3.41E-05
12GO:0009654: photosystem II oxygen evolving complex6.42E-05
13GO:0042651: thylakoid membrane6.42E-05
14GO:0009782: photosystem I antenna complex2.18E-04
15GO:0009515: granal stacked thylakoid2.18E-04
16GO:0010319: stromule2.97E-04
17GO:0009706: chloroplast inner membrane3.09E-04
18GO:0009543: chloroplast thylakoid lumen4.42E-04
19GO:0008274: gamma-tubulin ring complex4.86E-04
20GO:0009707: chloroplast outer membrane4.90E-04
21GO:0030095: chloroplast photosystem II6.66E-04
22GO:0010007: magnesium chelatase complex7.90E-04
23GO:0033281: TAT protein transport complex7.90E-04
24GO:0031977: thylakoid lumen8.21E-04
25GO:0000923: equatorial microtubule organizing center1.13E-03
26GO:0009330: DNA topoisomerase complex (ATP-hydrolyzing)1.50E-03
27GO:0019898: extrinsic component of membrane2.06E-03
28GO:0045261: proton-transporting ATP synthase complex, catalytic core F(1)2.35E-03
29GO:0031359: integral component of chloroplast outer membrane3.33E-03
30GO:0048046: apoplast3.41E-03
31GO:0009501: amyloplast3.86E-03
32GO:0009539: photosystem II reaction center4.42E-03
33GO:0042644: chloroplast nucleoid5.00E-03
34GO:0000922: spindle pole5.00E-03
35GO:0016324: apical plasma membrane6.25E-03
36GO:0030076: light-harvesting complex9.79E-03
37GO:0005777: peroxisome1.03E-02
38GO:0043234: protein complex1.06E-02
39GO:0005875: microtubule associated complex1.06E-02
40GO:0009532: plastid stroma1.30E-02
41GO:0009522: photosystem I1.95E-02
42GO:0009295: nucleoid2.57E-02
43GO:0005778: peroxisomal membrane2.57E-02
44GO:0009536: plastid3.26E-02
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Gene type



Gene DE type