Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT4G27970

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0035024: negative regulation of Rho protein signal transduction0.00E+00
2GO:0010412: mannan metabolic process0.00E+00
3GO:0032953: regulation of (1->3)-beta-D-glucan biosynthetic process0.00E+00
4GO:0071289: cellular response to nickel ion0.00E+00
5GO:0070328: triglyceride homeostasis0.00E+00
6GO:0006862: nucleotide transport0.00E+00
7GO:0055091: phospholipid homeostasis0.00E+00
8GO:0010200: response to chitin2.54E-06
9GO:0042344: indole glucosinolate catabolic process1.41E-05
10GO:0042538: hyperosmotic salinity response3.20E-05
11GO:0052544: defense response by callose deposition in cell wall3.39E-05
12GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway1.77E-04
13GO:0030974: thiamine pyrophosphate transport2.94E-04
14GO:0009865: pollen tube adhesion2.94E-04
15GO:0090421: embryonic meristem initiation2.94E-04
16GO:0060627: regulation of vesicle-mediated transport2.94E-04
17GO:0009609: response to symbiotic bacterium2.94E-04
18GO:1902265: abscisic acid homeostasis2.94E-04
19GO:0046938: phytochelatin biosynthetic process2.94E-04
20GO:0051180: vitamin transport2.94E-04
21GO:0009737: response to abscisic acid3.07E-04
22GO:0009611: response to wounding3.27E-04
23GO:2000280: regulation of root development5.16E-04
24GO:0015786: UDP-glucose transport6.45E-04
25GO:0010507: negative regulation of autophagy6.45E-04
26GO:0015709: thiosulfate transport6.45E-04
27GO:0071422: succinate transmembrane transport6.45E-04
28GO:0031407: oxylipin metabolic process6.45E-04
29GO:0010289: homogalacturonan biosynthetic process6.45E-04
30GO:0055088: lipid homeostasis6.45E-04
31GO:0015908: fatty acid transport6.45E-04
32GO:0006898: receptor-mediated endocytosis6.45E-04
33GO:0015893: drug transport6.45E-04
34GO:0009873: ethylene-activated signaling pathway6.49E-04
35GO:0046786: viral replication complex formation and maintenance1.04E-03
36GO:0016045: detection of bacterium1.04E-03
37GO:0010359: regulation of anion channel activity1.04E-03
38GO:0090630: activation of GTPase activity1.04E-03
39GO:0009961: response to 1-aminocyclopropane-1-carboxylic acid1.04E-03
40GO:0015783: GDP-fucose transport1.04E-03
41GO:0080168: abscisic acid transport1.04E-03
42GO:0044210: 'de novo' CTP biosynthetic process1.04E-03
43GO:0006839: mitochondrial transport1.33E-03
44GO:0055089: fatty acid homeostasis1.50E-03
45GO:0010371: regulation of gibberellin biosynthetic process1.50E-03
46GO:0015729: oxaloacetate transport1.50E-03
47GO:0072334: UDP-galactose transmembrane transport1.50E-03
48GO:0033014: tetrapyrrole biosynthetic process1.50E-03
49GO:0015700: arsenite transport1.50E-03
50GO:0031408: oxylipin biosynthetic process1.68E-03
51GO:0006468: protein phosphorylation1.99E-03
52GO:0009687: abscisic acid metabolic process2.01E-03
53GO:0046355: mannan catabolic process2.01E-03
54GO:0022622: root system development2.01E-03
55GO:0006355: regulation of transcription, DNA-templated2.28E-03
56GO:0048497: maintenance of floral organ identity2.56E-03
57GO:0006665: sphingolipid metabolic process2.56E-03
58GO:0032957: inositol trisphosphate metabolic process2.56E-03
59GO:0009247: glycolipid biosynthetic process2.56E-03
60GO:0070897: DNA-templated transcriptional preinitiation complex assembly2.56E-03
61GO:0071423: malate transmembrane transport2.56E-03
62GO:0009823: cytokinin catabolic process2.56E-03
63GO:0006970: response to osmotic stress3.04E-03
64GO:1900425: negative regulation of defense response to bacterium3.16E-03
65GO:0009749: response to glucose3.16E-03
66GO:0047484: regulation of response to osmotic stress3.16E-03
67GO:0035435: phosphate ion transmembrane transport3.16E-03
68GO:0009624: response to nematode3.56E-03
69GO:0048280: vesicle fusion with Golgi apparatus3.81E-03
70GO:0010555: response to mannitol3.81E-03
71GO:1901001: negative regulation of response to salt stress3.81E-03
72GO:2000033: regulation of seed dormancy process3.81E-03
73GO:0019760: glucosinolate metabolic process4.09E-03
74GO:1902074: response to salt4.49E-03
75GO:0010103: stomatal complex morphogenesis4.49E-03
76GO:0032880: regulation of protein localization4.49E-03
77GO:0009864: induced systemic resistance, jasmonic acid mediated signaling pathway4.49E-03
78GO:0009610: response to symbiotic fungus4.49E-03
79GO:0006955: immune response4.49E-03
80GO:0030497: fatty acid elongation4.49E-03
81GO:0007205: protein kinase C-activating G-protein coupled receptor signaling pathway4.49E-03
82GO:0008272: sulfate transport4.49E-03
83GO:0009690: cytokinin metabolic process5.21E-03
84GO:0019375: galactolipid biosynthetic process5.21E-03
85GO:2000070: regulation of response to water deprivation5.21E-03
86GO:0007155: cell adhesion5.21E-03
87GO:0009819: drought recovery5.21E-03
88GO:0009938: negative regulation of gibberellic acid mediated signaling pathway5.21E-03
89GO:0009880: embryonic pattern specification5.98E-03
90GO:0009751: response to salicylic acid6.67E-03
91GO:0048767: root hair elongation6.69E-03
92GO:0006783: heme biosynthetic process6.77E-03
93GO:0001708: cell fate specification6.77E-03
94GO:0098656: anion transmembrane transport6.77E-03
95GO:0046685: response to arsenic-containing substance6.77E-03
96GO:0006811: ion transport7.03E-03
97GO:0007346: regulation of mitotic cell cycle7.60E-03
98GO:0006779: porphyrin-containing compound biosynthetic process7.60E-03
99GO:0048268: clathrin coat assembly7.60E-03
100GO:0009641: shade avoidance8.48E-03
101GO:0006896: Golgi to vacuole transport8.48E-03
102GO:0006782: protoporphyrinogen IX biosynthetic process8.48E-03
103GO:0009617: response to bacterium8.96E-03
104GO:0010468: regulation of gene expression8.96E-03
105GO:0010015: root morphogenesis9.38E-03
106GO:0000038: very long-chain fatty acid metabolic process9.38E-03
107GO:0009682: induced systemic resistance9.38E-03
108GO:0010105: negative regulation of ethylene-activated signaling pathway1.03E-02
109GO:0045037: protein import into chloroplast stroma1.03E-02
110GO:0051707: response to other organism1.04E-02
111GO:0050826: response to freezing1.13E-02
112GO:0018107: peptidyl-threonine phosphorylation1.13E-02
113GO:2000012: regulation of auxin polar transport1.13E-02
114GO:0030048: actin filament-based movement1.13E-02
115GO:0048467: gynoecium development1.23E-02
116GO:0006351: transcription, DNA-templated1.32E-02
117GO:0010030: positive regulation of seed germination1.33E-02
118GO:0070588: calcium ion transmembrane transport1.33E-02
119GO:0009969: xyloglucan biosynthetic process1.33E-02
120GO:0009833: plant-type primary cell wall biogenesis1.44E-02
121GO:0010025: wax biosynthetic process1.44E-02
122GO:0009414: response to water deprivation1.48E-02
123GO:0042742: defense response to bacterium1.54E-02
124GO:0010187: negative regulation of seed germination1.55E-02
125GO:2000377: regulation of reactive oxygen species metabolic process1.55E-02
126GO:0009863: salicylic acid mediated signaling pathway1.55E-02
127GO:0030150: protein import into mitochondrial matrix1.55E-02
128GO:0009695: jasmonic acid biosynthetic process1.66E-02
129GO:0009269: response to desiccation1.78E-02
130GO:0051321: meiotic cell cycle1.78E-02
131GO:0030154: cell differentiation1.79E-02
132GO:0080092: regulation of pollen tube growth1.90E-02
133GO:0042545: cell wall modification1.95E-02
134GO:0001944: vasculature development2.02E-02
135GO:0009831: plant-type cell wall modification involved in multidimensional cell growth2.02E-02
136GO:0010584: pollen exine formation2.14E-02
137GO:0048443: stamen development2.14E-02
138GO:0042147: retrograde transport, endosome to Golgi2.27E-02
139GO:0070417: cellular response to cold2.27E-02
140GO:0008284: positive regulation of cell proliferation2.27E-02
141GO:0042631: cellular response to water deprivation2.40E-02
142GO:0042335: cuticle development2.40E-02
143GO:0048868: pollen tube development2.53E-02
144GO:0009960: endosperm development2.53E-02
145GO:0009958: positive gravitropism2.53E-02
146GO:0009409: response to cold2.58E-02
147GO:0009646: response to absence of light2.66E-02
148GO:0008654: phospholipid biosynthetic process2.80E-02
149GO:0006623: protein targeting to vacuole2.80E-02
150GO:0010183: pollen tube guidance2.80E-02
151GO:0009753: response to jasmonic acid2.92E-02
152GO:0010193: response to ozone2.94E-02
153GO:0000302: response to reactive oxygen species2.94E-02
154GO:0006891: intra-Golgi vesicle-mediated transport2.94E-02
155GO:0048510: regulation of timing of transition from vegetative to reproductive phase2.94E-02
156GO:0009790: embryo development2.94E-02
157GO:0006810: transport2.96E-02
158GO:0009828: plant-type cell wall loosening3.37E-02
159GO:0010150: leaf senescence3.48E-02
160GO:0045490: pectin catabolic process3.48E-02
161GO:0000910: cytokinesis3.66E-02
162GO:0001666: response to hypoxia3.82E-02
163GO:0010027: thylakoid membrane organization3.82E-02
164GO:0009739: response to gibberellin3.88E-02
165GO:0006470: protein dephosphorylation3.97E-02
166GO:0009788: negative regulation of abscisic acid-activated signaling pathway3.97E-02
167GO:0010029: regulation of seed germination3.97E-02
168GO:0006888: ER to Golgi vesicle-mediated transport4.29E-02
169GO:0010411: xyloglucan metabolic process4.29E-02
170GO:0015995: chlorophyll biosynthetic process4.29E-02
171GO:0016049: cell growth4.44E-02
172GO:0009817: defense response to fungus, incompatible interaction4.61E-02
173GO:0048481: plant ovule development4.61E-02
174GO:0006979: response to oxidative stress4.62E-02
RankGO TermAdjusted P value
1GO:0042171: lysophosphatidic acid acyltransferase activity0.00E+00
2GO:0015215: nucleotide transmembrane transporter activity0.00E+00
3GO:0017048: Rho GTPase binding0.00E+00
4GO:0016629: 12-oxophytodienoate reductase activity3.96E-06
5GO:0003883: CTP synthase activity3.17E-05
6GO:0090440: abscisic acid transporter activity2.94E-04
7GO:0071992: phytochelatin transmembrane transporter activity2.94E-04
8GO:0090422: thiamine pyrophosphate transporter activity2.94E-04
9GO:0046870: cadmium ion binding2.94E-04
10GO:0015446: ATPase-coupled arsenite transmembrane transporter activity2.94E-04
11GO:1901677: phosphate transmembrane transporter activity6.45E-04
12GO:0017022: myosin binding6.45E-04
13GO:0008883: glutamyl-tRNA reductase activity6.45E-04
14GO:0017040: ceramidase activity6.45E-04
15GO:0046509: 1,2-diacylglycerol 3-beta-galactosyltransferase activity6.45E-04
16GO:0015117: thiosulfate transmembrane transporter activity6.45E-04
17GO:0005096: GTPase activator activity8.98E-04
18GO:0008083: growth factor activity1.01E-03
19GO:0016301: kinase activity1.03E-03
20GO:0004383: guanylate cyclase activity1.04E-03
21GO:0005457: GDP-fucose transmembrane transporter activity1.04E-03
22GO:0047325: inositol tetrakisphosphate 1-kinase activity1.04E-03
23GO:0005310: dicarboxylic acid transmembrane transporter activity1.04E-03
24GO:0015141: succinate transmembrane transporter activity1.04E-03
25GO:0052726: inositol-1,3,4-trisphosphate 5-kinase activity1.04E-03
26GO:0043565: sequence-specific DNA binding1.41E-03
27GO:0005460: UDP-glucose transmembrane transporter activity1.50E-03
28GO:0052725: inositol-1,3,4-trisphosphate 6-kinase activity1.50E-03
29GO:0001653: peptide receptor activity1.50E-03
30GO:0033843: xyloglucan 6-xylosyltransferase activity1.50E-03
31GO:0016756: glutathione gamma-glutamylcysteinyltransferase activity1.50E-03
32GO:0015131: oxaloacetate transmembrane transporter activity1.50E-03
33GO:0035250: UDP-galactosyltransferase activity1.50E-03
34GO:0000062: fatty-acyl-CoA binding2.01E-03
35GO:0003841: 1-acylglycerol-3-phosphate O-acyltransferase activity2.01E-03
36GO:0016985: mannan endo-1,4-beta-mannosidase activity2.01E-03
37GO:0004623: phospholipase A2 activity2.56E-03
38GO:0070696: transmembrane receptor protein serine/threonine kinase binding2.56E-03
39GO:0010294: abscisic acid glucosyltransferase activity2.56E-03
40GO:0009922: fatty acid elongase activity2.56E-03
41GO:0005459: UDP-galactose transmembrane transporter activity2.56E-03
42GO:0019139: cytokinin dehydrogenase activity2.56E-03
43GO:0010181: FMN binding2.94E-03
44GO:0019137: thioglucosidase activity3.16E-03
45GO:0004674: protein serine/threonine kinase activity3.23E-03
46GO:0004702: signal transducer, downstream of receptor, with serine/threonine kinase activity4.35E-03
47GO:0004143: diacylglycerol kinase activity4.49E-03
48GO:0015140: malate transmembrane transporter activity4.49E-03
49GO:0044212: transcription regulatory region DNA binding4.91E-03
50GO:0015288: porin activity5.21E-03
51GO:0003700: transcription factor activity, sequence-specific DNA binding6.60E-03
52GO:0015297: antiporter activity6.74E-03
53GO:0000989: transcription factor activity, transcription factor binding6.77E-03
54GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds7.36E-03
55GO:0005545: 1-phosphatidylinositol binding8.48E-03
56GO:0015116: sulfate transmembrane transporter activity1.03E-02
57GO:0005315: inorganic phosphate transmembrane transporter activity1.13E-02
58GO:0005262: calcium channel activity1.13E-02
59GO:0015266: protein channel activity1.13E-02
60GO:0042973: glucan endo-1,3-beta-D-glucosidase activity1.23E-02
61GO:0003774: motor activity1.23E-02
62GO:0017025: TBP-class protein binding1.33E-02
63GO:0102337: 3-oxo-cerotoyl-CoA synthase activity1.44E-02
64GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity1.44E-02
65GO:0102336: 3-oxo-arachidoyl-CoA synthase activity1.44E-02
66GO:0045330: aspartyl esterase activity1.56E-02
67GO:0004707: MAP kinase activity1.78E-02
68GO:0080043: quercetin 3-O-glucosyltransferase activity1.84E-02
69GO:0080044: quercetin 7-O-glucosyltransferase activity1.84E-02
70GO:0030599: pectinesterase activity1.89E-02
71GO:0016746: transferase activity, transferring acyl groups2.07E-02
72GO:0008514: organic anion transmembrane transporter activity2.14E-02
73GO:0003677: DNA binding2.16E-02
74GO:0018024: histone-lysine N-methyltransferase activity2.27E-02
75GO:0030276: clathrin binding2.53E-02
76GO:0004672: protein kinase activity2.96E-02
77GO:0004675: transmembrane receptor protein serine/threonine kinase activity3.24E-02
78GO:0046910: pectinesterase inhibitor activity3.24E-02
79GO:0016722: oxidoreductase activity, oxidizing metal ions3.51E-02
80GO:0008194: UDP-glycosyltransferase activity3.88E-02
81GO:0102483: scopolin beta-glucosidase activity4.29E-02
82GO:0008757: S-adenosylmethionine-dependent methyltransferase activity4.44E-02
83GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity4.61E-02
84GO:0015238: drug transmembrane transporter activity4.77E-02
85GO:0004693: cyclin-dependent protein serine/threonine kinase activity4.94E-02
RankGO TermAdjusted P value
1GO:0034426: etioplast membrane0.00E+00
2GO:0070382: exocytic vesicle2.94E-04
3GO:0031357: integral component of chloroplast inner membrane6.45E-04
4GO:0030133: transport vesicle6.45E-04
5GO:0045177: apical part of cell1.50E-03
6GO:0009527: plastid outer membrane2.01E-03
7GO:0009505: plant-type cell wall2.46E-03
8GO:0000793: condensed chromosome3.16E-03
9GO:0005768: endosome3.99E-03
10GO:0000794: condensed nuclear chromosome4.49E-03
11GO:0031305: integral component of mitochondrial inner membrane5.21E-03
12GO:0012507: ER to Golgi transport vesicle membrane5.21E-03
13GO:0046930: pore complex5.98E-03
14GO:0005743: mitochondrial inner membrane6.10E-03
15GO:0009536: plastid7.32E-03
16GO:0016604: nuclear body7.60E-03
17GO:0005615: extracellular space8.25E-03
18GO:0031902: late endosome membrane9.61E-03
19GO:0046658: anchored component of plasma membrane1.02E-02
20GO:0005802: trans-Golgi network1.03E-02
21GO:0005938: cell cortex1.13E-02
22GO:0016607: nuclear speck1.72E-02
23GO:0005905: clathrin-coated pit1.78E-02
24GO:0009706: chloroplast inner membrane2.01E-02
25GO:0005744: mitochondrial inner membrane presequence translocase complex2.14E-02
26GO:0030136: clathrin-coated vesicle2.27E-02
27GO:0005770: late endosome2.53E-02
28GO:0009504: cell plate2.80E-02
29GO:0005618: cell wall2.85E-02
30GO:0005694: chromosome3.08E-02
31GO:0009941: chloroplast envelope4.01E-02
32GO:0009707: chloroplast outer membrane4.61E-02
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Gene type



Gene DE type