co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT4G27500

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:2001142: nicotinate transport	0.00E+00
2	GO:2000035: regulation of stem cell division	0.00E+00
3	GO:0010247: detection of phosphate ion	0.00E+00
4	GO:0019481: L-alanine catabolic process, by transamination	0.00E+00
5	GO:0032499: detection of peptidoglycan	0.00E+00
6	GO:2001143: N-methylnicotinate transport	0.00E+00
7	GO:0002752: cell surface pattern recognition receptor signaling pathway	0.00E+00
8	GO:0009560: embryo sac egg cell differentiation	0.00E+00
9	GO:0090352: regulation of nitrate assimilation	0.00E+00
10	GO:0006005: L-fucose biosynthetic process	0.00E+00
11	GO:0006468: protein phosphorylation	3.63E-06
12	GO:0046777: protein autophosphorylation	1.87E-05
13	GO:0010337: regulation of salicylic acid metabolic process	4.59E-05
14	GO:0006744: ubiquinone biosynthetic process	8.59E-05
15	GO:0009699: phenylpropanoid biosynthetic process	1.39E-04
16	GO:0006409: tRNA export from nucleus	1.54E-04
17	GO:0018920: glyphosate metabolic process	1.54E-04
18	GO:0006680: glucosylceramide catabolic process	1.54E-04
19	GO:0099636: cytoplasmic streaming	1.54E-04
20	GO:0051014: actin filament severing	1.54E-04
21	GO:0071277: cellular response to calcium ion	1.54E-04
22	GO:0032491: detection of molecule of fungal origin	1.54E-04
23	GO:0034628: 'de novo' NAD biosynthetic process from aspartate	1.54E-04
24	GO:0009966: regulation of signal transduction	1.54E-04
25	GO:2000069: regulation of post-embryonic root development	1.54E-04
26	GO:0042350: GDP-L-fucose biosynthetic process	1.54E-04
27	GO:0099132: ATP hydrolysis coupled cation transmembrane transport	1.54E-04
28	GO:0010113: negative regulation of systemic acquired resistance	1.54E-04
29	GO:0009845: seed germination	2.28E-04
30	GO:0010105: negative regulation of ethylene-activated signaling pathway	3.23E-04
31	GO:0000266: mitochondrial fission	3.23E-04
32	GO:0046740: transport of virus in host, cell to cell	3.51E-04
33	GO:0010372: positive regulation of gibberellin biosynthetic process	3.51E-04
34	GO:0070588: calcium ion transmembrane transport	4.65E-04
35	GO:0046854: phosphatidylinositol phosphorylation	4.65E-04
36	GO:0070475: rRNA base methylation	5.75E-04
37	GO:0010165: response to X-ray	5.75E-04
38	GO:0042351: 'de novo' GDP-L-fucose biosynthetic process	5.75E-04
39	GO:0051176: positive regulation of sulfur metabolic process	5.75E-04
40	GO:0010447: response to acidic pH	5.75E-04
41	GO:0061077: chaperone-mediated protein folding	6.92E-04
42	GO:0030100: regulation of endocytosis	8.23E-04
43	GO:0009399: nitrogen fixation	8.23E-04
44	GO:0009686: gibberellin biosynthetic process	8.23E-04
45	GO:0071323: cellular response to chitin	8.23E-04
46	GO:0051131: chaperone-mediated protein complex assembly	8.23E-04
47	GO:0010071: root meristem specification	8.23E-04
48	GO:0033014: tetrapyrrole biosynthetic process	8.23E-04
49	GO:0071219: cellular response to molecule of bacterial origin	1.09E-03
50	GO:0001709: cell fate determination	1.09E-03
51	GO:1902347: response to strigolactone	1.09E-03
52	GO:0015743: malate transport	1.09E-03
53	GO:0033320: UDP-D-xylose biosynthetic process	1.09E-03
54	GO:0010483: pollen tube reception	1.09E-03
55	GO:0051764: actin crosslink formation	1.09E-03
56	GO:0009742: brassinosteroid mediated signaling pathway	1.19E-03
57	GO:0048544: recognition of pollen	1.19E-03
58	GO:0043484: regulation of RNA splicing	1.38E-03
59	GO:0009164: nucleoside catabolic process	1.38E-03
60	GO:0030041: actin filament polymerization	1.38E-03
61	GO:0009435: NAD biosynthetic process	1.38E-03
62	GO:0030308: negative regulation of cell growth	1.38E-03
63	GO:0009408: response to heat	1.66E-03
64	GO:0033365: protein localization to organelle	1.70E-03
65	GO:0016070: RNA metabolic process	1.70E-03
66	GO:0000470: maturation of LSU-rRNA	1.70E-03
67	GO:0042732: D-xylose metabolic process	1.70E-03
68	GO:0048317: seed morphogenesis	1.70E-03
69	GO:0010286: heat acclimation	1.74E-03
70	GO:0001666: response to hypoxia	1.96E-03
71	GO:0009423: chorismate biosynthetic process	2.03E-03
72	GO:0009788: negative regulation of abscisic acid-activated signaling pathway	2.07E-03
73	GO:0070370: cellular heat acclimation	2.39E-03
74	GO:0010044: response to aluminum ion	2.39E-03
75	GO:0006955: immune response	2.39E-03
76	GO:0051693: actin filament capping	2.39E-03
77	GO:0007205: protein kinase C-activating G-protein coupled receptor signaling pathway	2.39E-03
78	GO:0016049: cell growth	2.42E-03
79	GO:0008219: cell death	2.54E-03
80	GO:0007166: cell surface receptor signaling pathway	2.61E-03
81	GO:0009787: regulation of abscisic acid-activated signaling pathway	2.77E-03
82	GO:0006491: N-glycan processing	2.77E-03
83	GO:1900150: regulation of defense response to fungus	2.77E-03
84	GO:0010078: maintenance of root meristem identity	2.77E-03
85	GO:2000070: regulation of response to water deprivation	2.77E-03
86	GO:0045010: actin nucleation	2.77E-03
87	GO:0048658: anther wall tapetum development	2.77E-03
88	GO:0010492: maintenance of shoot apical meristem identity	2.77E-03
89	GO:0006402: mRNA catabolic process	2.77E-03
90	GO:0017004: cytochrome complex assembly	3.16E-03
91	GO:0009808: lignin metabolic process	3.16E-03
92	GO:0015996: chlorophyll catabolic process	3.16E-03
93	GO:0060321: acceptance of pollen	3.16E-03
94	GO:0045087: innate immune response	3.21E-03
95	GO:0009737: response to abscisic acid	3.44E-03
96	GO:0006783: heme biosynthetic process	3.58E-03
97	GO:0048589: developmental growth	3.58E-03
98	GO:0009060: aerobic respiration	3.58E-03
99	GO:0007062: sister chromatid cohesion	3.58E-03
100	GO:0007338: single fertilization	3.58E-03
101	GO:0046685: response to arsenic-containing substance	3.58E-03
102	GO:0008202: steroid metabolic process	4.01E-03
103	GO:0006779: porphyrin-containing compound biosynthetic process	4.01E-03
104	GO:0030042: actin filament depolymerization	4.01E-03
105	GO:0009611: response to wounding	4.10E-03
106	GO:0035556: intracellular signal transduction	4.30E-03
107	GO:0006782: protoporphyrinogen IX biosynthetic process	4.46E-03
108	GO:0019538: protein metabolic process	4.46E-03
109	GO:0009870: defense response signaling pathway, resistance gene-dependent	4.46E-03
110	GO:0048829: root cap development	4.46E-03
111	GO:0016310: phosphorylation	4.54E-03
112	GO:0009723: response to ethylene	4.61E-03
113	GO:0009073: aromatic amino acid family biosynthetic process	4.92E-03
114	GO:0009750: response to fructose	4.92E-03
115	GO:0010015: root morphogenesis	4.92E-03
116	GO:0009698: phenylpropanoid metabolic process	4.92E-03
117	GO:0080167: response to karrikin	5.03E-03
118	GO:0010152: pollen maturation	5.41E-03
119	GO:0016925: protein sumoylation	5.41E-03
120	GO:0050826: response to freezing	5.91E-03
121	GO:0007015: actin filament organization	6.42E-03
122	GO:0006302: double-strand break repair	6.42E-03
123	GO:0034605: cellular response to heat	6.42E-03
124	GO:0046686: response to cadmium ion	6.60E-03
125	GO:0090351: seedling development	6.95E-03
126	GO:0009225: nucleotide-sugar metabolic process	6.95E-03
127	GO:0009553: embryo sac development	7.68E-03
128	GO:0009863: salicylic acid mediated signaling pathway	8.05E-03
129	GO:0007010: cytoskeleton organization	8.05E-03
130	GO:0051017: actin filament bundle assembly	8.05E-03
131	GO:0006487: protein N-linked glycosylation	8.05E-03
132	GO:0048364: root development	8.71E-03
133	GO:0030433: ubiquitin-dependent ERAD pathway	9.82E-03
134	GO:0007005: mitochondrion organization	9.82E-03
135	GO:0016226: iron-sulfur cluster assembly	9.82E-03
136	GO:0071215: cellular response to abscisic acid stimulus	1.04E-02
137	GO:0040007: growth	1.04E-02
138	GO:0009306: protein secretion	1.11E-02
139	GO:0006817: phosphate ion transport	1.11E-02
140	GO:0009873: ethylene-activated signaling pathway	1.14E-02
141	GO:0042742: defense response to bacterium	1.15E-02
142	GO:0042147: retrograde transport, endosome to Golgi	1.17E-02
143	GO:0080022: primary root development	1.24E-02
144	GO:0010501: RNA secondary structure unwinding	1.24E-02
145	GO:0006606: protein import into nucleus	1.24E-02
146	GO:0042631: cellular response to water deprivation	1.24E-02
147	GO:0010182: sugar mediated signaling pathway	1.31E-02
148	GO:0009741: response to brassinosteroid	1.31E-02
149	GO:0009960: endosperm development	1.31E-02
150	GO:0007059: chromosome segregation	1.37E-02
151	GO:0009791: post-embryonic development	1.44E-02
152	GO:0010183: pollen tube guidance	1.44E-02
153	GO:0002229: defense response to oomycetes	1.52E-02
154	GO:0006891: intra-Golgi vesicle-mediated transport	1.52E-02
155	GO:0048510: regulation of timing of transition from vegetative to reproductive phase	1.52E-02
156	GO:0032502: developmental process	1.59E-02
157	GO:0031047: gene silencing by RNA	1.59E-02
158	GO:0071281: cellular response to iron ion	1.66E-02
159	GO:0010090: trichome morphogenesis	1.66E-02
160	GO:1901657: glycosyl compound metabolic process	1.66E-02
161	GO:0009555: pollen development	1.71E-02
162	GO:0007267: cell-cell signaling	1.81E-02
163	GO:0016579: protein deubiquitination	1.89E-02
164	GO:0009615: response to virus	1.97E-02
165	GO:0009816: defense response to bacterium, incompatible interaction	2.05E-02
166	GO:0015995: chlorophyll biosynthetic process	2.21E-02
167	GO:0048573: photoperiodism, flowering	2.21E-02
168	GO:0006970: response to osmotic stress	2.29E-02
169	GO:0048481: plant ovule development	2.38E-02
170	GO:0009817: defense response to fungus, incompatible interaction	2.38E-02
171	GO:0010311: lateral root formation	2.46E-02
172	GO:0048767: root hair elongation	2.46E-02
173	GO:0006499: N-terminal protein myristoylation	2.55E-02
174	GO:0009910: negative regulation of flower development	2.64E-02
175	GO:0000724: double-strand break repair via homologous recombination	2.72E-02
176	GO:0006839: mitochondrial transport	3.09E-02
177	GO:0006897: endocytosis	3.18E-02
178	GO:0008283: cell proliferation	3.37E-02
179	GO:0009744: response to sucrose	3.37E-02
180	GO:0009965: leaf morphogenesis	3.66E-02
181	GO:0031347: regulation of defense response	3.86E-02
182	GO:0009846: pollen germination	3.96E-02
183	GO:0006486: protein glycosylation	4.17E-02
184	GO:0010224: response to UV-B	4.27E-02
185	GO:0006857: oligopeptide transport	4.37E-02
186	GO:0006417: regulation of translation	4.48E-02
187	GO:0009626: plant-type hypersensitive response	4.91E-02

Rank	GO Term	Adjusted P value
1	GO:0016710: trans-cinnamate 4-monooxygenase activity	0.00E+00
2	GO:0047734: CDP-glycerol diphosphatase activity	0.00E+00
3	GO:2001080: chitosan binding	0.00E+00
4	GO:0090417: N-methylnicotinate transporter activity	0.00E+00
5	GO:0030621: U4 snRNA binding	0.00E+00
6	GO:0090416: nicotinate transporter activity	0.00E+00
7	GO:0010857: calcium-dependent protein kinase activity	0.00E+00
8	GO:0102118: gibberellin A4 carboxyl methyltransferase activity	0.00E+00
9	GO:0008987: quinolinate synthetase A activity	0.00E+00
10	GO:0005524: ATP binding	3.96E-09
11	GO:0016301: kinase activity	9.68E-08
12	GO:0004674: protein serine/threonine kinase activity	1.87E-06
13	GO:0004672: protein kinase activity	2.12E-06
14	GO:0047631: ADP-ribose diphosphatase activity	3.07E-05
15	GO:0032266: phosphatidylinositol-3-phosphate binding	1.54E-04
16	GO:0004348: glucosylceramidase activity	1.54E-04
17	GO:0010341: gibberellin carboxyl-O-methyltransferase activity	1.54E-04
18	GO:0009383: rRNA (cytosine-C5-)-methyltransferase activity	1.54E-04
19	GO:0017151: DEAD/H-box RNA helicase binding	1.54E-04
20	GO:0003866: 3-phosphoshikimate 1-carboxyvinyltransferase activity	1.54E-04
21	GO:0050577: GDP-L-fucose synthase activity	1.54E-04
22	GO:0080025: phosphatidylinositol-3,5-bisphosphate binding	1.54E-04
23	GO:1990585: hydroxyproline O-arabinosyltransferase activity	3.51E-04
24	GO:0008883: glutamyl-tRNA reductase activity	3.51E-04
25	GO:0005388: calcium-transporting ATPase activity	3.67E-04
26	GO:0000285: 1-phosphatidylinositol-3-phosphate 5-kinase activity	8.23E-04
27	GO:0004021: L-alanine:2-oxoglutarate aminotransferase activity	8.23E-04
28	GO:0019789: SUMO transferase activity	8.23E-04
29	GO:0004571: mannosyl-oligosaccharide 1,2-alpha-mannosidase activity	8.23E-04
30	GO:0003779: actin binding	1.07E-03
31	GO:0019199: transmembrane receptor protein kinase activity	1.09E-03
32	GO:0005253: anion channel activity	1.09E-03
33	GO:0043015: gamma-tubulin binding	1.09E-03
34	GO:0008536: Ran GTPase binding	1.11E-03
35	GO:0018685: alkane 1-monooxygenase activity	1.38E-03
36	GO:0002020: protease binding	1.38E-03
37	GO:0004356: glutamate-ammonia ligase activity	1.38E-03
38	GO:0017070: U6 snRNA binding	1.38E-03
39	GO:0000210: NAD+ diphosphatase activity	1.70E-03
40	GO:0035673: oligopeptide transmembrane transporter activity	1.70E-03
41	GO:0048040: UDP-glucuronate decarboxylase activity	1.70E-03
42	GO:0005516: calmodulin binding	1.80E-03
43	GO:0004675: transmembrane receptor protein serine/threonine kinase activity	2.02E-03
44	GO:0016818: hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	2.03E-03
45	GO:0004723: calcium-dependent protein serine/threonine phosphatase activity	2.03E-03
46	GO:0004559: alpha-mannosidase activity	2.03E-03
47	GO:0070403: NAD+ binding	2.03E-03
48	GO:0015140: malate transmembrane transporter activity	2.39E-03
49	GO:0004143: diacylglycerol kinase activity	2.39E-03
50	GO:0005509: calcium ion binding	2.64E-03
51	GO:0004714: transmembrane receptor protein tyrosine kinase activity	2.77E-03
52	GO:0004430: 1-phosphatidylinositol 4-kinase activity	3.16E-03
53	GO:0003951: NAD+ kinase activity	3.16E-03
54	GO:0008142: oxysterol binding	3.16E-03
55	GO:0004712: protein serine/threonine/tyrosine kinase activity	3.50E-03
56	GO:0016207: 4-coumarate-CoA ligase activity	3.58E-03
57	GO:0005515: protein binding	4.27E-03
58	GO:0016308: 1-phosphatidylinositol-4-phosphate 5-kinase activity	4.46E-03
59	GO:0008047: enzyme activator activity	4.46E-03
60	GO:0000049: tRNA binding	5.41E-03
61	GO:0015198: oligopeptide transporter activity	5.41E-03
62	GO:0008139: nuclear localization sequence binding	5.91E-03
63	GO:0019888: protein phosphatase regulator activity	5.91E-03
64	GO:0042803: protein homodimerization activity	6.71E-03
65	GO:0008061: chitin binding	6.95E-03
66	GO:0016874: ligase activity	7.45E-03
67	GO:0051082: unfolded protein binding	7.91E-03
68	GO:0005528: FK506 binding	8.05E-03
69	GO:0033612: receptor serine/threonine kinase binding	9.22E-03
70	GO:0019706: protein-cysteine S-palmitoyltransferase activity	9.22E-03
71	GO:0036459: thiol-dependent ubiquitinyl hydrolase activity	9.22E-03
72	GO:0022891: substrate-specific transmembrane transporter activity	1.04E-02
73	GO:0008565: protein transporter activity	1.19E-02
74	GO:0050662: coenzyme binding	1.37E-02
75	GO:0016853: isomerase activity	1.37E-02
76	GO:0008017: microtubule binding	1.44E-02
77	GO:0004843: thiol-dependent ubiquitin-specific protease activity	1.52E-02
78	GO:0004518: nuclease activity	1.59E-02
79	GO:0051015: actin filament binding	1.66E-02
80	GO:0046982: protein heterodimerization activity	2.09E-02
81	GO:0003729: mRNA binding	2.09E-02
82	GO:0008375: acetylglucosaminyltransferase activity	2.13E-02
83	GO:0009931: calcium-dependent protein serine/threonine kinase activity	2.13E-02
84	GO:0004004: ATP-dependent RNA helicase activity	2.21E-02
85	GO:0030247: polysaccharide binding	2.21E-02
86	GO:0004683: calmodulin-dependent protein kinase activity	2.21E-02
87	GO:0102483: scopolin beta-glucosidase activity	2.21E-02
88	GO:0008757: S-adenosylmethionine-dependent methyltransferase activity	2.29E-02
89	GO:0046872: metal ion binding	2.51E-02
90	GO:0008422: beta-glucosidase activity	2.99E-02
91	GO:0051539: 4 iron, 4 sulfur cluster binding	3.09E-02
92	GO:0050661: NADP binding	3.09E-02
93	GO:0004871: signal transducer activity	3.31E-02
94	GO:0035091: phosphatidylinositol binding	3.56E-02
95	GO:0043621: protein self-association	3.56E-02
96	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	3.76E-02
97	GO:0003924: GTPase activity	3.89E-02
98	GO:0031625: ubiquitin protein ligase binding	4.48E-02

Rank	GO Term	Adjusted P value
1	GO:0043680: filiform apparatus	0.00E+00
2	GO:0005886: plasma membrane	2.36E-08
3	GO:0016442: RISC complex	1.54E-04
4	GO:0016020: membrane	4.27E-04
5	GO:0009506: plasmodesma	5.39E-04
6	GO:0005768: endosome	6.29E-04
7	GO:0010008: endosome membrane	9.19E-04
8	GO:0030915: Smc5-Smc6 complex	1.38E-03
9	GO:0005746: mitochondrial respiratory chain	1.38E-03
10	GO:0016363: nuclear matrix	2.03E-03
11	GO:0010369: chromocenter	2.03E-03
12	GO:0005643: nuclear pore	2.54E-03
13	GO:0046540: U4/U6 x U5 tri-snRNP complex	3.16E-03
14	GO:0005794: Golgi apparatus	3.42E-03
15	GO:0010494: cytoplasmic stress granule	3.58E-03
16	GO:0017119: Golgi transport complex	4.46E-03
17	GO:0090404: pollen tube tip	4.92E-03
18	GO:0048471: perinuclear region of cytoplasm	4.92E-03
19	GO:0005884: actin filament	4.92E-03
20	GO:0005938: cell cortex	5.91E-03
21	GO:0005829: cytosol	6.14E-03
22	GO:0016607: nuclear speck	6.78E-03
23	GO:0043234: protein complex	7.49E-03
24	GO:0005730: nucleolus	7.61E-03
25	GO:0005802: trans-Golgi network	8.10E-03
26	GO:0005774: vacuolar membrane	8.91E-03
27	GO:0005741: mitochondrial outer membrane	9.22E-03
28	GO:0043231: intracellular membrane-bounded organelle	9.35E-03
29	GO:0005623: cell	1.02E-02
30	GO:0009524: phragmoplast	1.05E-02
31	GO:0016021: integral component of membrane	1.06E-02
32	GO:0005887: integral component of plasma membrane	1.22E-02
33	GO:0009504: cell plate	1.44E-02
34	GO:0031965: nuclear membrane	1.44E-02
35	GO:0000145: exocyst	1.59E-02
36	GO:0071944: cell periphery	1.66E-02
37	GO:0032580: Golgi cisterna membrane	1.74E-02
38	GO:0005778: peroxisomal membrane	1.81E-02
39	GO:0000932: P-body	1.97E-02
40	GO:0005788: endoplasmic reticulum lumen	2.05E-02
41	GO:0019005: SCF ubiquitin ligase complex	2.38E-02
42	GO:0005737: cytoplasm	3.26E-02
43	GO:0005783: endoplasmic reticulum	3.37E-02
44	GO:0090406: pollen tube	3.37E-02
45	GO:0005622: intracellular	3.51E-02
46	GO:0005743: mitochondrial inner membrane	3.62E-02
47	GO:0005856: cytoskeleton	3.66E-02
48	GO:0005635: nuclear envelope	4.37E-02
49	GO:0005681: spliceosomal complex	4.69E-02