co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT4G27310

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0015717: triose phosphate transport	0.00E+00
2	GO:1903428: positive regulation of reactive oxygen species biosynthetic process	0.00E+00
3	GO:0016118: carotenoid catabolic process	0.00E+00
4	GO:0015979: photosynthesis	2.90E-10
5	GO:0009768: photosynthesis, light harvesting in photosystem I	1.37E-09
6	GO:0009644: response to high light intensity	9.39E-09
7	GO:0018298: protein-chromophore linkage	8.64E-08
8	GO:0009645: response to low light intensity stimulus	3.12E-07
9	GO:0009769: photosynthesis, light harvesting in photosystem II	3.12E-07
10	GO:0035304: regulation of protein dephosphorylation	4.96E-07
11	GO:0009773: photosynthetic electron transport in photosystem I	2.48E-06
12	GO:0010207: photosystem II assembly	5.01E-06
13	GO:0010021: amylopectin biosynthetic process	8.50E-06
14	GO:0009765: photosynthesis, light harvesting	8.50E-06
15	GO:0010600: regulation of auxin biosynthetic process	8.50E-06
16	GO:0010017: red or far-red light signaling pathway	1.47E-05
17	GO:0042549: photosystem II stabilization	2.15E-05
18	GO:0010244: response to low fluence blue light stimulus by blue low-fluence system	3.05E-05
19	GO:0010928: regulation of auxin mediated signaling pathway	5.40E-05
20	GO:0080093: regulation of photorespiration	9.69E-05
21	GO:0031998: regulation of fatty acid beta-oxidation	9.69E-05
22	GO:0000023: maltose metabolic process	9.69E-05
23	GO:0000025: maltose catabolic process	9.69E-05
24	GO:0010205: photoinhibition	1.03E-04
25	GO:0010218: response to far red light	1.23E-04
26	GO:0019684: photosynthesis, light reaction	1.44E-04
27	GO:0005983: starch catabolic process	1.68E-04
28	GO:0010114: response to red light	2.14E-04
29	GO:0009266: response to temperature stimulus	2.19E-04
30	GO:0016124: xanthophyll catabolic process	2.28E-04
31	GO:0005976: polysaccharide metabolic process	2.28E-04
32	GO:0031648: protein destabilization	2.28E-04
33	GO:0016121: carotene catabolic process	2.28E-04
34	GO:0030388: fructose 1,6-bisphosphate metabolic process	2.28E-04
35	GO:0009269: response to desiccation	3.74E-04
36	GO:0035436: triose phosphate transmembrane transport	3.80E-04
37	GO:1902448: positive regulation of shade avoidance	3.80E-04
38	GO:0006000: fructose metabolic process	3.80E-04
39	GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly	5.46E-04
40	GO:0019252: starch biosynthetic process	6.99E-04
41	GO:0030104: water homeostasis	7.26E-04
42	GO:0006021: inositol biosynthetic process	7.26E-04
43	GO:0015976: carbon utilization	7.26E-04
44	GO:0010023: proanthocyanidin biosynthetic process	7.26E-04
45	GO:0015713: phosphoglycerate transport	7.26E-04
46	GO:0006097: glyoxylate cycle	9.17E-04
47	GO:0035434: copper ion transmembrane transport	9.17E-04
48	GO:0016120: carotene biosynthetic process	9.17E-04
49	GO:0009635: response to herbicide	1.12E-03
50	GO:0009643: photosynthetic acclimation	1.12E-03
51	GO:0010264: myo-inositol hexakisphosphate biosynthetic process	1.12E-03
52	GO:0000160: phosphorelay signal transduction system	1.44E-03
53	GO:0009416: response to light stimulus	1.50E-03
54	GO:0010161: red light signaling pathway	1.57E-03
55	GO:0010196: nonphotochemical quenching	1.57E-03
56	GO:0009637: response to blue light	1.72E-03
57	GO:0009704: de-etiolation	1.81E-03
58	GO:0005978: glycogen biosynthetic process	1.81E-03
59	GO:0006002: fructose 6-phosphate metabolic process	2.07E-03
60	GO:0051865: protein autoubiquitination	2.33E-03
61	GO:0010206: photosystem II repair	2.33E-03
62	GO:0090333: regulation of stomatal closure	2.33E-03
63	GO:0005982: starch metabolic process	2.61E-03
64	GO:0048829: root cap development	2.90E-03
65	GO:0031627: telomeric loop formation	2.90E-03
66	GO:0009585: red, far-red light phototransduction	2.96E-03
67	GO:0009750: response to fructose	3.20E-03
68	GO:0009698: phenylpropanoid metabolic process	3.20E-03
69	GO:0045037: protein import into chloroplast stroma	3.50E-03
70	GO:0010628: positive regulation of gene expression	3.82E-03
71	GO:0006108: malate metabolic process	3.82E-03
72	GO:0009718: anthocyanin-containing compound biosynthetic process	3.82E-03
73	GO:0006094: gluconeogenesis	3.82E-03
74	GO:0005986: sucrose biosynthetic process	3.82E-03
75	GO:0006302: double-strand break repair	4.15E-03
76	GO:0090351: seedling development	4.49E-03
77	GO:0006825: copper ion transport	5.55E-03
78	GO:0051321: meiotic cell cycle	5.93E-03
79	GO:0048511: rhythmic process	5.93E-03
80	GO:0019915: lipid storage	5.93E-03
81	GO:2000022: regulation of jasmonic acid mediated signaling pathway	6.31E-03
82	GO:0009693: ethylene biosynthetic process	6.70E-03
83	GO:0071215: cellular response to abscisic acid stimulus	6.70E-03
84	GO:0009409: response to cold	6.93E-03
85	GO:0007623: circadian rhythm	7.24E-03
86	GO:0016117: carotenoid biosynthetic process	7.51E-03
87	GO:0006814: sodium ion transport	8.79E-03
88	GO:0008654: phospholipid biosynthetic process	9.23E-03
89	GO:0071554: cell wall organization or biogenesis	9.68E-03
90	GO:0048235: pollen sperm cell differentiation	1.01E-02
91	GO:0006310: DNA recombination	1.11E-02
92	GO:0051607: defense response to virus	1.20E-02
93	GO:0009737: response to abscisic acid	1.38E-02
94	GO:0080167: response to karrikin	1.39E-02
95	GO:0048573: photoperiodism, flowering	1.41E-02
96	GO:0016311: dephosphorylation	1.46E-02
97	GO:0009834: plant-type secondary cell wall biogenesis	1.62E-02
98	GO:0010119: regulation of stomatal movement	1.68E-02
99	GO:0045892: negative regulation of transcription, DNA-templated	1.70E-02
100	GO:0006099: tricarboxylic acid cycle	1.85E-02
101	GO:0042742: defense response to bacterium	1.86E-02
102	GO:0042542: response to hydrogen peroxide	2.08E-02
103	GO:0009640: photomorphogenesis	2.14E-02
104	GO:0006351: transcription, DNA-templated	2.84E-02
105	GO:0009735: response to cytokinin	3.34E-02
106	GO:0009624: response to nematode	3.41E-02
107	GO:0016036: cellular response to phosphate starvation	4.78E-02

Rank	GO Term	Adjusted P value
1	GO:0030504: inorganic diphosphate transmembrane transporter activity	0.00E+00
2	GO:0016754: sinapoylglucose-malate O-sinapoyltransferase activity	0.00E+00
3	GO:0010242: oxygen evolving activity	0.00E+00
4	GO:0016166: phytoene dehydrogenase activity	0.00E+00
5	GO:0016730: oxidoreductase activity, acting on iron-sulfur proteins as donors	0.00E+00
6	GO:0031409: pigment binding	7.47E-10
7	GO:0016168: chlorophyll binding	4.80E-08
8	GO:0004134: 4-alpha-glucanotransferase activity	9.69E-05
9	GO:0008266: poly(U) RNA binding	2.19E-04
10	GO:0003844: 1,4-alpha-glucan branching enzyme activity	2.28E-04
11	GO:0010297: heteropolysaccharide binding	2.28E-04
12	GO:0033201: alpha-1,4-glucan synthase activity	2.28E-04
13	GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity	2.28E-04
14	GO:0047158: sinapoylglucose-sinapoylglucose O-sinapoyltransferase activity	2.28E-04
15	GO:0004512: inositol-3-phosphate synthase activity	2.28E-04
16	GO:0008967: phosphoglycolate phosphatase activity	2.28E-04
17	GO:0071917: triose-phosphate transmembrane transporter activity	3.80E-04
18	GO:0043169: cation binding	3.80E-04
19	GO:0004373: glycogen (starch) synthase activity	3.80E-04
20	GO:0009011: starch synthase activity	7.26E-04
21	GO:0015120: phosphoglycerate transmembrane transporter activity	7.26E-04
22	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	7.26E-04
23	GO:0000156: phosphorelay response regulator activity	8.45E-04
24	GO:0045549: 9-cis-epoxycarotenoid dioxygenase activity	9.17E-04
25	GO:0016615: malate dehydrogenase activity	1.12E-03
26	GO:2001070: starch binding	1.12E-03
27	GO:0030060: L-malate dehydrogenase activity	1.34E-03
28	GO:0004033: aldo-keto reductase (NADP) activity	1.81E-03
29	GO:0005375: copper ion transmembrane transporter activity	2.07E-03
30	GO:0071949: FAD binding	2.33E-03
31	GO:0003691: double-stranded telomeric DNA binding	3.20E-03
32	GO:0005315: inorganic phosphate transmembrane transporter activity	3.82E-03
33	GO:0004089: carbonate dehydratase activity	3.82E-03
34	GO:0031072: heat shock protein binding	3.82E-03
35	GO:0004565: beta-galactosidase activity	3.82E-03
36	GO:0003712: transcription cofactor activity	4.49E-03
37	GO:0005515: protein binding	5.47E-03
38	GO:0008408: 3'-5' exonuclease activity	5.93E-03
39	GO:0003756: protein disulfide isomerase activity	7.10E-03
40	GO:0008514: organic anion transmembrane transporter activity	7.10E-03
41	GO:0048038: quinone binding	9.68E-03
42	GO:0016413: O-acetyltransferase activity	1.20E-02
43	GO:0030145: manganese ion binding	1.68E-02
44	GO:0005509: calcium ion binding	1.68E-02
45	GO:0003677: DNA binding	1.90E-02
46	GO:0004185: serine-type carboxypeptidase activity	2.14E-02
47	GO:0043621: protein self-association	2.27E-02
48	GO:0015293: symporter activity	2.33E-02
49	GO:0005198: structural molecule activity	2.33E-02
50	GO:0051082: unfolded protein binding	3.41E-02
51	GO:0015035: protein disulfide oxidoreductase activity	3.48E-02
52	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	4.07E-02
53	GO:0016829: lyase activity	4.23E-02
54	GO:0015144: carbohydrate transmembrane transporter activity	4.54E-02
55	GO:0008565: protein transporter activity	4.54E-02
56	GO:0046872: metal ion binding	4.70E-02
57	GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds	4.80E-02
58	GO:0015297: antiporter activity	4.86E-02
59	GO:0005351: sugar:proton symporter activity	4.94E-02

Rank	GO Term	Adjusted P value
1	GO:0042579: microbody	0.00E+00
2	GO:0005943: phosphatidylinositol 3-kinase complex, class IA	0.00E+00
3	GO:0009534: chloroplast thylakoid	1.75E-24
4	GO:0009535: chloroplast thylakoid membrane	1.41E-17
5	GO:0009579: thylakoid	4.04E-15
6	GO:0010287: plastoglobule	2.39E-14
7	GO:0009507: chloroplast	8.21E-12
8	GO:0009941: chloroplast envelope	3.13E-10
9	GO:0009522: photosystem I	9.62E-09
10	GO:0030076: light-harvesting complex	6.89E-08
11	GO:0009523: photosystem II	8.20E-07
12	GO:0030095: chloroplast photosystem II	5.01E-06
13	GO:0009517: PSII associated light-harvesting complex II	8.50E-06
14	GO:0031977: thylakoid lumen	9.62E-06
15	GO:0009654: photosystem II oxygen evolving complex	1.06E-05
16	GO:0019898: extrinsic component of membrane	3.62E-05
17	GO:0009501: amyloplast	5.40E-05
18	GO:0009570: chloroplast stroma	6.24E-05
19	GO:0009543: chloroplast thylakoid lumen	6.48E-05
20	GO:0000791: euchromatin	9.69E-05
21	GO:0009783: photosystem II antenna complex	9.69E-05
22	GO:0030870: Mre11 complex	2.28E-04
23	GO:0030093: chloroplast photosystem I	2.28E-04
24	GO:0042651: thylakoid membrane	3.41E-04
25	GO:0009509: chromoplast	3.80E-04
26	GO:0030915: Smc5-Smc6 complex	9.17E-04
27	GO:0055035: plastid thylakoid membrane	9.17E-04
28	GO:0000795: synaptonemal complex	9.17E-04
29	GO:0009538: photosystem I reaction center	1.81E-03
30	GO:0000783: nuclear telomere cap complex	2.07E-03
31	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	2.33E-03
32	GO:0009508: plastid chromosome	3.82E-03
33	GO:0048046: apoplast	9.42E-03
34	GO:0000785: chromatin	1.01E-02
35	GO:0009295: nucleoid	1.16E-02
36	GO:0009706: chloroplast inner membrane	3.41E-02
37	GO:0005623: cell	4.07E-02