Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT4G26840

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0001881: receptor recycling0.00E+00
2GO:0006592: ornithine biosynthetic process0.00E+00
3GO:0048870: cell motility0.00E+00
4GO:0032211: negative regulation of telomere maintenance via telomerase0.00E+00
5GO:0015822: ornithine transport0.00E+00
6GO:0007530: sex determination0.00E+00
7GO:0046085: adenosine metabolic process0.00E+00
8GO:0009236: cobalamin biosynthetic process0.00E+00
9GO:0006412: translation1.28E-48
10GO:0042254: ribosome biogenesis1.60E-23
11GO:0009853: photorespiration3.21E-06
12GO:0000027: ribosomal large subunit assembly4.32E-06
13GO:0006511: ubiquitin-dependent protein catabolic process2.48E-05
14GO:0006120: mitochondrial electron transport, NADH to ubiquinone3.97E-05
15GO:0000028: ribosomal small subunit assembly8.72E-05
16GO:1902626: assembly of large subunit precursor of preribosome8.78E-05
17GO:0008333: endosome to lysosome transport8.78E-05
18GO:0045454: cell redox homeostasis5.03E-04
19GO:0000066: mitochondrial ornithine transport8.10E-04
20GO:2001006: regulation of cellulose biosynthetic process8.10E-04
21GO:0019354: siroheme biosynthetic process8.10E-04
22GO:0009240: isopentenyl diphosphate biosynthetic process8.10E-04
23GO:2000025: regulation of leaf formation8.10E-04
24GO:0031468: nuclear envelope reassembly8.10E-04
25GO:0015801: aromatic amino acid transport8.10E-04
26GO:0051603: proteolysis involved in cellular protein catabolic process8.47E-04
27GO:0006122: mitochondrial electron transport, ubiquinol to cytochrome c1.04E-03
28GO:0010928: regulation of auxin mediated signaling pathway1.30E-03
29GO:0022900: electron transport chain1.59E-03
30GO:0042147: retrograde transport, endosome to Golgi1.61E-03
31GO:0034243: regulation of transcription elongation from RNA polymerase II promoter1.75E-03
32GO:0050992: dimethylallyl diphosphate biosynthetic process1.75E-03
33GO:0008154: actin polymerization or depolymerization1.75E-03
34GO:0045901: positive regulation of translational elongation1.75E-03
35GO:0006452: translational frameshifting1.75E-03
36GO:0007163: establishment or maintenance of cell polarity1.75E-03
37GO:0006432: phenylalanyl-tRNA aminoacylation1.75E-03
38GO:0080064: 4,4-dimethyl-9beta,19-cyclopropylsterol oxidation1.75E-03
39GO:0045905: positive regulation of translational termination1.75E-03
40GO:0071668: plant-type cell wall assembly1.75E-03
41GO:0015991: ATP hydrolysis coupled proton transport1.78E-03
42GO:0009245: lipid A biosynthetic process1.91E-03
43GO:0006662: glycerol ether metabolic process1.96E-03
44GO:0000387: spliceosomal snRNP assembly2.26E-03
45GO:0045793: positive regulation of cell size2.90E-03
46GO:0006760: folic acid-containing compound metabolic process2.90E-03
47GO:0034227: tRNA thio-modification2.90E-03
48GO:0010452: histone H3-K36 methylation2.90E-03
49GO:0090708: specification of plant organ axis polarity2.90E-03
50GO:0032786: positive regulation of DNA-templated transcription, elongation2.90E-03
51GO:0002181: cytoplasmic translation2.90E-03
52GO:1904278: positive regulation of wax biosynthetic process2.90E-03
53GO:0046417: chorismate metabolic process2.90E-03
54GO:0015940: pantothenate biosynthetic process2.90E-03
55GO:0006414: translational elongation3.29E-03
56GO:0006626: protein targeting to mitochondrion4.01E-03
57GO:0046686: response to cadmium ion4.12E-03
58GO:0006882: cellular zinc ion homeostasis4.23E-03
59GO:0032877: positive regulation of DNA endoreduplication4.23E-03
60GO:0006166: purine ribonucleoside salvage4.23E-03
61GO:0070301: cellular response to hydrogen peroxide4.23E-03
62GO:0006107: oxaloacetate metabolic process4.23E-03
63GO:0006241: CTP biosynthetic process4.23E-03
64GO:0009113: purine nucleobase biosynthetic process4.23E-03
65GO:1901332: negative regulation of lateral root development4.23E-03
66GO:0006165: nucleoside diphosphate phosphorylation4.23E-03
67GO:0042989: sequestering of actin monomers4.23E-03
68GO:0006228: UTP biosynthetic process4.23E-03
69GO:0006168: adenine salvage4.23E-03
70GO:0006164: purine nucleotide biosynthetic process4.23E-03
71GO:0006446: regulation of translational initiation4.53E-03
72GO:0009165: nucleotide biosynthetic process5.72E-03
73GO:0051781: positive regulation of cell division5.72E-03
74GO:0010387: COP9 signalosome assembly5.72E-03
75GO:0006183: GTP biosynthetic process5.72E-03
76GO:0010363: regulation of plant-type hypersensitive response5.72E-03
77GO:0002098: tRNA wobble uridine modification5.72E-03
78GO:0032366: intracellular sterol transport5.72E-03
79GO:0006487: protein N-linked glycosylation6.31E-03
80GO:0009116: nucleoside metabolic process6.31E-03
81GO:0006406: mRNA export from nucleus6.31E-03
82GO:0006289: nucleotide-excision repair6.31E-03
83GO:0044209: AMP salvage7.36E-03
84GO:0030041: actin filament polymerization7.36E-03
85GO:0060776: simple leaf morphogenesis7.36E-03
86GO:0015992: proton transport7.68E-03
87GO:0010431: seed maturation7.68E-03
88GO:0061077: chaperone-mediated protein folding7.68E-03
89GO:0034599: cellular response to oxidative stress8.37E-03
90GO:0016226: iron-sulfur cluster assembly8.43E-03
91GO:0009651: response to salt stress8.57E-03
92GO:0006777: Mo-molybdopterin cofactor biosynthetic process9.16E-03
93GO:0051568: histone H3-K4 methylation9.16E-03
94GO:0006555: methionine metabolic process9.16E-03
95GO:0043248: proteasome assembly9.16E-03
96GO:0045040: protein import into mitochondrial outer membrane9.16E-03
97GO:0009955: adaxial/abaxial pattern specification1.11E-02
98GO:0019509: L-methionine salvage from methylthioadenosine1.11E-02
99GO:1901001: negative regulation of response to salt stress1.11E-02
100GO:0000054: ribosomal subunit export from nucleus1.11E-02
101GO:0006606: protein import into nucleus1.18E-02
102GO:0000413: protein peptidyl-prolyl isomerization1.18E-02
103GO:0009793: embryo development ending in seed dormancy1.27E-02
104GO:0032880: regulation of protein localization1.32E-02
105GO:0000338: protein deneddylation1.32E-02
106GO:0022904: respiratory electron transport chain1.32E-02
107GO:0015986: ATP synthesis coupled proton transport1.37E-02
108GO:0045010: actin nucleation1.54E-02
109GO:0035265: organ growth1.54E-02
110GO:0009690: cytokinin metabolic process1.54E-02
111GO:0006506: GPI anchor biosynthetic process1.54E-02
112GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process1.71E-02
113GO:0009808: lignin metabolic process1.77E-02
114GO:0010099: regulation of photomorphogenesis1.77E-02
115GO:0001510: RNA methylation1.77E-02
116GO:0006526: arginine biosynthetic process1.77E-02
117GO:0010090: trichome morphogenesis1.80E-02
118GO:0006914: autophagy1.92E-02
119GO:0006189: 'de novo' IMP biosynthetic process2.01E-02
120GO:0048589: developmental growth2.01E-02
121GO:0000902: cell morphogenesis2.01E-02
122GO:0098656: anion transmembrane transport2.01E-02
123GO:0046685: response to arsenic-containing substance2.01E-02
124GO:0006754: ATP biosynthetic process2.01E-02
125GO:0071577: zinc II ion transmembrane transport2.27E-02
126GO:0031146: SCF-dependent proteasomal ubiquitin-dependent protein catabolic process2.27E-02
127GO:0010267: production of ta-siRNAs involved in RNA interference2.27E-02
128GO:0016569: covalent chromatin modification2.33E-02
129GO:0043069: negative regulation of programmed cell death2.53E-02
130GO:0016441: posttranscriptional gene silencing2.53E-02
131GO:0006325: chromatin organization2.53E-02
132GO:0000103: sulfate assimilation2.53E-02
133GO:0016485: protein processing2.81E-02
134GO:0010015: root morphogenesis2.81E-02
135GO:0072593: reactive oxygen species metabolic process2.81E-02
136GO:0009073: aromatic amino acid family biosynthetic process2.81E-02
137GO:0006913: nucleocytoplasmic transport2.81E-02
138GO:0015770: sucrose transport2.81E-02
139GO:0015031: protein transport2.97E-02
140GO:0000398: mRNA splicing, via spliceosome3.01E-02
141GO:0006820: anion transport3.09E-02
142GO:0016925: protein sumoylation3.09E-02
143GO:0010229: inflorescence development3.39E-02
144GO:0010628: positive regulation of gene expression3.39E-02
145GO:0010102: lateral root morphogenesis3.39E-02
146GO:0006108: malate metabolic process3.39E-02
147GO:0006807: nitrogen compound metabolic process3.39E-02
148GO:0010043: response to zinc ion3.46E-02
149GO:0048467: gynoecium development3.69E-02
150GO:0007034: vacuolar transport3.69E-02
151GO:0002237: response to molecule of bacterial origin3.69E-02
152GO:0010020: chloroplast fission3.69E-02
153GO:0006099: tricarboxylic acid cycle3.96E-02
154GO:0007030: Golgi organization4.00E-02
155GO:0010039: response to iron ion4.00E-02
156GO:0006071: glycerol metabolic process4.33E-02
157GO:0034976: response to endoplasmic reticulum stress4.33E-02
158GO:0006413: translational initiation4.54E-02
159GO:2000377: regulation of reactive oxygen species metabolic process4.66E-02
160GO:0030150: protein import into mitochondrial matrix4.66E-02
161GO:0007010: cytoskeleton organization4.66E-02
162GO:0009926: auxin polar transport4.87E-02
163GO:0008283: cell proliferation4.87E-02
164GO:0051302: regulation of cell division4.99E-02
165GO:0008299: isoprenoid biosynthetic process4.99E-02
RankGO TermAdjusted P value
1GO:0050152: omega-amidase activity0.00E+00
2GO:0004637: phosphoribosylamine-glycine ligase activity0.00E+00
3GO:0051266: sirohydrochlorin ferrochelatase activity0.00E+00
4GO:0061799: cyclic pyranopterin monophosphate synthase activity0.00E+00
5GO:0008777: acetylornithine deacetylase activity0.00E+00
6GO:0016852: sirohydrochlorin cobaltochelatase activity0.00E+00
7GO:0003735: structural constituent of ribosome8.87E-70
8GO:0004298: threonine-type endopeptidase activity6.09E-14
9GO:0003729: mRNA binding6.56E-13
10GO:0008121: ubiquinol-cytochrome-c reductase activity1.37E-06
11GO:0008233: peptidase activity1.66E-06
12GO:0003755: peptidyl-prolyl cis-trans isomerase activity1.07E-04
13GO:0019843: rRNA binding1.09E-04
14GO:0001055: RNA polymerase II activity2.04E-04
15GO:0004576: oligosaccharyl transferase activity3.01E-04
16GO:0001054: RNA polymerase I activity3.14E-04
17GO:0004129: cytochrome-c oxidase activity3.14E-04
18GO:0008794: arsenate reductase (glutaredoxin) activity3.14E-04
19GO:0015035: protein disulfide oxidoreductase activity3.58E-04
20GO:0001056: RNA polymerase III activity3.79E-04
21GO:0008137: NADH dehydrogenase (ubiquinone) activity4.00E-04
22GO:0004579: dolichyl-diphosphooligosaccharide-protein glycotransferase activity4.48E-04
23GO:0031177: phosphopantetheine binding6.21E-04
24GO:0003864: 3-methyl-2-oxobutanoate hydroxymethyltransferase activity8.10E-04
25GO:0004452: isopentenyl-diphosphate delta-isomerase activity8.10E-04
26GO:0019707: protein-cysteine S-acyltransferase activity8.10E-04
27GO:0030611: arsenate reductase activity8.10E-04
28GO:0000035: acyl binding8.20E-04
29GO:0035064: methylated histone binding1.30E-03
30GO:0000036: ACP phosphopantetheine attachment site binding involved in fatty acid biosynthetic process1.30E-03
31GO:0043022: ribosome binding1.30E-03
32GO:0050897: cobalt ion binding1.35E-03
33GO:0003746: translation elongation factor activity1.55E-03
34GO:0047134: protein-disulfide reductase activity1.61E-03
35GO:0015173: aromatic amino acid transmembrane transporter activity1.75E-03
36GO:0018708: thiol S-methyltransferase activity1.75E-03
37GO:1990585: hydroxyproline O-arabinosyltransferase activity1.75E-03
38GO:0004106: chorismate mutase activity1.75E-03
39GO:0000064: L-ornithine transmembrane transporter activity1.75E-03
40GO:0004826: phenylalanine-tRNA ligase activity1.75E-03
41GO:0000179: rRNA (adenine-N6,N6-)-dimethyltransferase activity1.75E-03
42GO:0046933: proton-transporting ATP synthase activity, rotational mechanism1.96E-03
43GO:0004791: thioredoxin-disulfide reductase activity2.15E-03
44GO:0047617: acyl-CoA hydrolase activity2.26E-03
45GO:0008430: selenium binding2.90E-03
46GO:0010309: acireductone dioxygenase [iron(II)-requiring] activity2.90E-03
47GO:0005047: signal recognition particle binding2.90E-03
48GO:0032403: protein complex binding2.90E-03
49GO:0008649: rRNA methyltransferase activity2.90E-03
50GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor3.04E-03
51GO:0003899: DNA-directed 5'-3' RNA polymerase activity3.64E-03
52GO:0004089: carbonate dehydratase activity4.01E-03
53GO:0008097: 5S rRNA binding4.23E-03
54GO:0004749: ribose phosphate diphosphokinase activity4.23E-03
55GO:0000254: C-4 methylsterol oxidase activity4.23E-03
56GO:0003999: adenine phosphoribosyltransferase activity4.23E-03
57GO:0004550: nucleoside diphosphate kinase activity4.23E-03
58GO:0010011: auxin binding5.72E-03
59GO:0016810: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds5.72E-03
60GO:0070628: proteasome binding5.72E-03
61GO:0016820: hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances5.72E-03
62GO:0016616: oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor5.72E-03
63GO:0000993: RNA polymerase II core binding5.72E-03
64GO:0051536: iron-sulfur cluster binding6.31E-03
65GO:0043130: ubiquitin binding6.31E-03
66GO:0005528: FK506 binding6.31E-03
67GO:0005275: amine transmembrane transporter activity7.36E-03
68GO:0016651: oxidoreductase activity, acting on NAD(P)H7.36E-03
69GO:0003785: actin monomer binding7.36E-03
70GO:0005496: steroid binding7.36E-03
71GO:0031386: protein tag7.36E-03
72GO:0016788: hydrolase activity, acting on ester bonds8.77E-03
73GO:0031593: polyubiquitin binding9.16E-03
74GO:0051117: ATPase binding9.16E-03
75GO:0003723: RNA binding1.01E-02
76GO:0051920: peroxiredoxin activity1.11E-02
77GO:0051537: 2 iron, 2 sulfur cluster binding1.21E-02
78GO:0008235: metalloexopeptidase activity1.32E-02
79GO:0042162: telomeric DNA binding1.32E-02
80GO:0008143: poly(A) binding1.32E-02
81GO:0008320: protein transmembrane transporter activity1.32E-02
82GO:0015288: porin activity1.54E-02
83GO:0016209: antioxidant activity1.54E-02
84GO:0015078: hydrogen ion transmembrane transporter activity1.77E-02
85GO:0008308: voltage-gated anion channel activity1.77E-02
86GO:0008173: RNA methyltransferase activity1.77E-02
87GO:0003743: translation initiation factor activity1.83E-02
88GO:0008889: glycerophosphodiester phosphodiesterase activity2.01E-02
89GO:0008047: enzyme activator activity2.53E-02
90GO:0004177: aminopeptidase activity2.81E-02
91GO:0008515: sucrose transmembrane transporter activity2.81E-02
92GO:0046961: proton-transporting ATPase activity, rotational mechanism2.81E-02
93GO:0008327: methyl-CpG binding2.81E-02
94GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity2.99E-02
95GO:0000049: tRNA binding3.09E-02
96GO:0015266: protein channel activity3.39E-02
97GO:0003697: single-stranded DNA binding3.79E-02
98GO:0003712: transcription cofactor activity4.00E-02
99GO:0051119: sugar transmembrane transporter activity4.00E-02
100GO:0008565: protein transporter activity4.16E-02
101GO:0051539: 4 iron, 4 sulfur cluster binding4.32E-02
102GO:0004725: protein tyrosine phosphatase activity4.33E-02
103GO:0005385: zinc ion transmembrane transporter activity4.66E-02
104GO:0003714: transcription corepressor activity4.66E-02
105GO:0043424: protein histidine kinase binding4.99E-02
RankGO TermAdjusted P value
1GO:0016469: proton-transporting two-sector ATPase complex0.00E+00
2GO:0043186: P granule0.00E+00
3GO:0005675: holo TFIIH complex0.00E+00
4GO:0097361: CIA complex0.00E+00
5GO:0005840: ribosome5.69E-54
6GO:0022626: cytosolic ribosome1.16E-44
7GO:0022625: cytosolic large ribosomal subunit4.40E-44
8GO:0022627: cytosolic small ribosomal subunit4.34E-23
9GO:0005829: cytosol3.73E-20
10GO:0005737: cytoplasm2.58E-14
11GO:0005839: proteasome core complex6.09E-14
12GO:0005747: mitochondrial respiratory chain complex I2.06E-13
13GO:0005730: nucleolus3.81E-13
14GO:0000502: proteasome complex1.15E-12
15GO:0005774: vacuolar membrane3.64E-11
16GO:0005750: mitochondrial respiratory chain complex III8.97E-10
17GO:0045271: respiratory chain complex I5.46E-09
18GO:0005773: vacuole1.86E-08
19GO:0016020: membrane9.49E-08
20GO:0009506: plasmodesma1.34E-06
21GO:0015934: large ribosomal subunit2.33E-06
22GO:0019773: proteasome core complex, alpha-subunit complex4.00E-06
23GO:0031966: mitochondrial membrane1.60E-05
24GO:0030904: retromer complex2.41E-05
25GO:0005665: DNA-directed RNA polymerase II, core complex2.48E-05
26GO:0005753: mitochondrial proton-transporting ATP synthase complex5.32E-05
27GO:0000419: DNA-directed RNA polymerase V complex6.61E-05
28GO:0005736: DNA-directed RNA polymerase I complex1.59E-04
29GO:0005666: DNA-directed RNA polymerase III complex2.04E-04
30GO:0000275: mitochondrial proton-transporting ATP synthase complex, catalytic core F(1)3.01E-04
31GO:0005732: small nucleolar ribonucleoprotein complex4.05E-04
32GO:0008250: oligosaccharyltransferase complex4.48E-04
33GO:0005771: multivesicular body6.21E-04
34GO:0032044: DSIF complex8.10E-04
35GO:0019774: proteasome core complex, beta-subunit complex8.10E-04
36GO:0005783: endoplasmic reticulum8.91E-04
37GO:0009507: chloroplast1.27E-03
38GO:0045273: respiratory chain complex II1.30E-03
39GO:0005749: mitochondrial respiratory chain complex II, succinate dehydrogenase complex (ubiquinone)1.30E-03
40GO:0000421: autophagosome membrane1.30E-03
41GO:0035145: exon-exon junction complex1.75E-03
42GO:0005697: telomerase holoenzyme complex1.75E-03
43GO:0071011: precatalytic spliceosome2.26E-03
44GO:0005739: mitochondrion2.40E-03
45GO:0000418: DNA-directed RNA polymerase IV complex2.65E-03
46GO:0000439: core TFIIH complex2.90E-03
47GO:0034719: SMN-Sm protein complex2.90E-03
48GO:0005838: proteasome regulatory particle2.90E-03
49GO:0005853: eukaryotic translation elongation factor 1 complex2.90E-03
50GO:0071013: catalytic step 2 spliceosome3.06E-03
51GO:0019013: viral nucleocapsid4.01E-03
52GO:0033588: Elongator holoenzyme complex4.23E-03
53GO:0005719: nuclear euchromatin4.23E-03
54GO:0033180: proton-transporting V-type ATPase, V1 domain4.23E-03
55GO:1990726: Lsm1-7-Pat1 complex4.23E-03
56GO:0005788: endoplasmic reticulum lumen4.44E-03
57GO:0005622: intracellular5.15E-03
58GO:0016471: vacuolar proton-transporting V-type ATPase complex5.72E-03
59GO:0016593: Cdc73/Paf1 complex5.72E-03
60GO:0005682: U5 snRNP5.72E-03
61GO:0000445: THO complex part of transcription export complex5.72E-03
62GO:0033179: proton-transporting V-type ATPase, V0 domain5.72E-03
63GO:0005758: mitochondrial intermembrane space6.31E-03
64GO:0070469: respiratory chain6.98E-03
65GO:0005618: cell wall7.12E-03
66GO:0005687: U4 snRNP7.36E-03
67GO:0097526: spliceosomal tri-snRNP complex7.36E-03
68GO:0005746: mitochondrial respiratory chain7.36E-03
69GO:0015935: small ribosomal subunit7.68E-03
70GO:0031410: cytoplasmic vesicle8.43E-03
71GO:0032588: trans-Golgi network membrane9.16E-03
72GO:0031209: SCAR complex9.16E-03
73GO:0031902: late endosome membrane9.87E-03
74GO:0005689: U12-type spliceosomal complex1.11E-02
75GO:0005762: mitochondrial large ribosomal subunit1.11E-02
76GO:0005801: cis-Golgi network1.11E-02
77GO:0005759: mitochondrial matrix1.25E-02
78GO:0033116: endoplasmic reticulum-Golgi intermediate compartment membrane1.32E-02
79GO:0000347: THO complex1.32E-02
80GO:0005688: U6 snRNP1.54E-02
81GO:0071004: U2-type prespliceosome1.54E-02
82GO:0046930: pore complex1.77E-02
83GO:0046540: U4/U6 x U5 tri-snRNP complex1.77E-02
84GO:0005742: mitochondrial outer membrane translocase complex1.77E-02
85GO:0005763: mitochondrial small ribosomal subunit2.01E-02
86GO:0008180: COP9 signalosome2.01E-02
87GO:0005685: U1 snRNP2.01E-02
88GO:0031090: organelle membrane2.01E-02
89GO:0005740: mitochondrial envelope2.53E-02
90GO:0005686: U2 snRNP2.53E-02
91GO:0009536: plastid2.74E-02
92GO:0005852: eukaryotic translation initiation factor 3 complex2.81E-02
93GO:0008541: proteasome regulatory particle, lid subcomplex2.81E-02
94GO:0031307: integral component of mitochondrial outer membrane3.09E-02
95GO:0009508: plastid chromosome3.39E-02
96GO:0005938: cell cortex3.39E-02
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Gene type



Gene DE type