GO Enrichment Analysis of Co-expressed Genes with
AT4G25960
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0016553: base conversion or substitution editing | 0.00E+00 |
| 2 | GO:0000025: maltose catabolic process | 0.00E+00 |
| 3 | GO:0033494: ferulate metabolic process | 0.00E+00 |
| 4 | GO:0005980: glycogen catabolic process | 0.00E+00 |
| 5 | GO:0010378: temperature compensation of the circadian clock | 0.00E+00 |
| 6 | GO:0010025: wax biosynthetic process | 4.53E-08 |
| 7 | GO:0042761: very long-chain fatty acid biosynthetic process | 8.23E-07 |
| 8 | GO:0005983: starch catabolic process | 1.88E-06 |
| 9 | GO:0009735: response to cytokinin | 1.27E-05 |
| 10 | GO:0042335: cuticle development | 1.56E-05 |
| 11 | GO:0050829: defense response to Gram-negative bacterium | 2.90E-05 |
| 12 | GO:0006633: fatty acid biosynthetic process | 5.66E-05 |
| 13 | GO:0009817: defense response to fungus, incompatible interaction | 6.84E-05 |
| 14 | GO:0043489: RNA stabilization | 7.75E-05 |
| 15 | GO:0032958: inositol phosphate biosynthetic process | 7.75E-05 |
| 16 | GO:0080051: cutin transport | 7.75E-05 |
| 17 | GO:0033481: galacturonate biosynthetic process | 7.75E-05 |
| 18 | GO:0000023: maltose metabolic process | 7.75E-05 |
| 19 | GO:0009631: cold acclimation | 8.51E-05 |
| 20 | GO:0000038: very long-chain fatty acid metabolic process | 1.04E-04 |
| 21 | GO:0010143: cutin biosynthetic process | 1.60E-04 |
| 22 | GO:0005976: polysaccharide metabolic process | 1.85E-04 |
| 23 | GO:0010353: response to trehalose | 1.85E-04 |
| 24 | GO:0015908: fatty acid transport | 1.85E-04 |
| 25 | GO:0009409: response to cold | 2.02E-04 |
| 26 | GO:0009809: lignin biosynthetic process | 2.14E-04 |
| 27 | GO:0006020: inositol metabolic process | 4.49E-04 |
| 28 | GO:0071555: cell wall organization | 5.81E-04 |
| 29 | GO:2000122: negative regulation of stomatal complex development | 5.98E-04 |
| 30 | GO:0010037: response to carbon dioxide | 5.98E-04 |
| 31 | GO:0010222: stem vascular tissue pattern formation | 5.98E-04 |
| 32 | GO:0015976: carbon utilization | 5.98E-04 |
| 33 | GO:0010023: proanthocyanidin biosynthetic process | 5.98E-04 |
| 34 | GO:0045727: positive regulation of translation | 5.98E-04 |
| 35 | GO:0010600: regulation of auxin biosynthetic process | 5.98E-04 |
| 36 | GO:0009435: NAD biosynthetic process | 7.57E-04 |
| 37 | GO:0048578: positive regulation of long-day photoperiodism, flowering | 7.57E-04 |
| 38 | GO:0009913: epidermal cell differentiation | 9.24E-04 |
| 39 | GO:0009861: jasmonic acid and ethylene-dependent systemic resistance | 1.10E-03 |
| 40 | GO:0010244: response to low fluence blue light stimulus by blue low-fluence system | 1.10E-03 |
| 41 | GO:0010161: red light signaling pathway | 1.29E-03 |
| 42 | GO:0009610: response to symbiotic fungus | 1.29E-03 |
| 43 | GO:0009704: de-etiolation | 1.48E-03 |
| 44 | GO:0010928: regulation of auxin mediated signaling pathway | 1.48E-03 |
| 45 | GO:0008610: lipid biosynthetic process | 1.48E-03 |
| 46 | GO:0005978: glycogen biosynthetic process | 1.48E-03 |
| 47 | GO:0080167: response to karrikin | 1.54E-03 |
| 48 | GO:0032544: plastid translation | 1.69E-03 |
| 49 | GO:0006783: heme biosynthetic process | 1.91E-03 |
| 50 | GO:0009737: response to abscisic acid | 2.18E-03 |
| 51 | GO:0009585: red, far-red light phototransduction | 2.21E-03 |
| 52 | GO:0006782: protoporphyrinogen IX biosynthetic process | 2.37E-03 |
| 53 | GO:0055114: oxidation-reduction process | 2.50E-03 |
| 54 | GO:0018119: peptidyl-cysteine S-nitrosylation | 2.61E-03 |
| 55 | GO:0009773: photosynthetic electron transport in photosystem I | 2.61E-03 |
| 56 | GO:0016024: CDP-diacylglycerol biosynthetic process | 2.86E-03 |
| 57 | GO:0006006: glucose metabolic process | 3.12E-03 |
| 58 | GO:0009718: anthocyanin-containing compound biosynthetic process | 3.12E-03 |
| 59 | GO:0010588: cotyledon vascular tissue pattern formation | 3.12E-03 |
| 60 | GO:0006807: nitrogen compound metabolic process | 3.12E-03 |
| 61 | GO:0009266: response to temperature stimulus | 3.38E-03 |
| 62 | GO:0019253: reductive pentose-phosphate cycle | 3.38E-03 |
| 63 | GO:0009225: nucleotide-sugar metabolic process | 3.66E-03 |
| 64 | GO:0019915: lipid storage | 4.82E-03 |
| 65 | GO:0030245: cellulose catabolic process | 5.13E-03 |
| 66 | GO:0010017: red or far-red light signaling pathway | 5.13E-03 |
| 67 | GO:0046686: response to cadmium ion | 5.42E-03 |
| 68 | GO:0000271: polysaccharide biosynthetic process | 6.44E-03 |
| 69 | GO:0042631: cellular response to water deprivation | 6.44E-03 |
| 70 | GO:0045489: pectin biosynthetic process | 6.78E-03 |
| 71 | GO:0015986: ATP synthesis coupled proton transport | 7.13E-03 |
| 72 | GO:0042752: regulation of circadian rhythm | 7.13E-03 |
| 73 | GO:0019252: starch biosynthetic process | 7.49E-03 |
| 74 | GO:0000302: response to reactive oxygen species | 7.85E-03 |
| 75 | GO:0006974: cellular response to DNA damage stimulus | 1.10E-02 |
| 76 | GO:0015995: chlorophyll biosynthetic process | 1.14E-02 |
| 77 | GO:0015979: photosynthesis | 1.18E-02 |
| 78 | GO:0042742: defense response to bacterium | 1.27E-02 |
| 79 | GO:0006979: response to oxidative stress | 1.29E-02 |
| 80 | GO:0010218: response to far red light | 1.31E-02 |
| 81 | GO:0010119: regulation of stomatal movement | 1.36E-02 |
| 82 | GO:0045087: innate immune response | 1.45E-02 |
| 83 | GO:0016051: carbohydrate biosynthetic process | 1.45E-02 |
| 84 | GO:0009637: response to blue light | 1.45E-02 |
| 85 | GO:0016042: lipid catabolic process | 1.48E-02 |
| 86 | GO:0034599: cellular response to oxidative stress | 1.49E-02 |
| 87 | GO:0006631: fatty acid metabolic process | 1.64E-02 |
| 88 | GO:0042542: response to hydrogen peroxide | 1.68E-02 |
| 89 | GO:0000209: protein polyubiquitination | 1.78E-02 |
| 90 | GO:0009644: response to high light intensity | 1.83E-02 |
| 91 | GO:0006855: drug transmembrane transport | 1.93E-02 |
| 92 | GO:0006364: rRNA processing | 2.14E-02 |
| 93 | GO:0006096: glycolytic process | 2.41E-02 |
| 94 | GO:0042545: cell wall modification | 2.69E-02 |
| 95 | GO:0009416: response to light stimulus | 2.71E-02 |
| 96 | GO:0009555: pollen development | 2.71E-02 |
| 97 | GO:0006396: RNA processing | 2.81E-02 |
| 98 | GO:0042744: hydrogen peroxide catabolic process | 3.54E-02 |
| 99 | GO:0007623: circadian rhythm | 4.06E-02 |
| 100 | GO:0045490: pectin catabolic process | 4.06E-02 |
| 101 | GO:0009451: RNA modification | 4.13E-02 |
| 102 | GO:0009739: response to gibberellin | 4.40E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0004134: 4-alpha-glucanotransferase activity | 0.00E+00 |
| 2 | GO:0004645: phosphorylase activity | 0.00E+00 |
| 3 | GO:0008184: glycogen phosphorylase activity | 0.00E+00 |
| 4 | GO:0052747: sinapyl alcohol dehydrogenase activity | 2.82E-07 |
| 5 | GO:0045551: cinnamyl-alcohol dehydrogenase activity | 1.88E-06 |
| 6 | GO:0008266: poly(U) RNA binding | 2.98E-06 |
| 7 | GO:0102337: 3-oxo-cerotoyl-CoA synthase activity | 4.46E-06 |
| 8 | GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity | 4.46E-06 |
| 9 | GO:0102336: 3-oxo-arachidoyl-CoA synthase activity | 4.46E-06 |
| 10 | GO:0015245: fatty acid transporter activity | 7.75E-05 |
| 11 | GO:0033857: diphosphoinositol-pentakisphosphate kinase activity | 7.75E-05 |
| 12 | GO:0000829: inositol heptakisphosphate kinase activity | 7.75E-05 |
| 13 | GO:0050521: alpha-glucan, water dikinase activity | 7.75E-05 |
| 14 | GO:0000828: inositol hexakisphosphate kinase activity | 7.75E-05 |
| 15 | GO:0047066: phospholipid-hydroperoxide glutathione peroxidase activity | 7.75E-05 |
| 16 | GO:0004853: uroporphyrinogen decarboxylase activity | 7.75E-05 |
| 17 | GO:0018708: thiol S-methyltransferase activity | 1.85E-04 |
| 18 | GO:0004618: phosphoglycerate kinase activity | 1.85E-04 |
| 19 | GO:0010297: heteropolysaccharide binding | 1.85E-04 |
| 20 | GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups | 2.81E-04 |
| 21 | GO:0004324: ferredoxin-NADP+ reductase activity | 3.11E-04 |
| 22 | GO:0070330: aromatase activity | 3.11E-04 |
| 23 | GO:0050734: hydroxycinnamoyltransferase activity | 3.11E-04 |
| 24 | GO:0016746: transferase activity, transferring acyl groups | 3.57E-04 |
| 25 | GO:0016810: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds | 5.98E-04 |
| 26 | GO:0050378: UDP-glucuronate 4-epimerase activity | 5.98E-04 |
| 27 | GO:0008878: glucose-1-phosphate adenylyltransferase activity | 5.98E-04 |
| 28 | GO:0003959: NADPH dehydrogenase activity | 7.57E-04 |
| 29 | GO:0045300: acyl-[acyl-carrier-protein] desaturase activity | 7.57E-04 |
| 30 | GO:0018685: alkane 1-monooxygenase activity | 7.57E-04 |
| 31 | GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity | 9.24E-04 |
| 32 | GO:2001070: starch binding | 9.24E-04 |
| 33 | GO:0042626: ATPase activity, coupled to transmembrane movement of substances | 9.24E-04 |
| 34 | GO:0004130: cytochrome-c peroxidase activity | 9.24E-04 |
| 35 | GO:0004366: glycerol-3-phosphate O-acyltransferase activity | 9.24E-04 |
| 36 | GO:0004602: glutathione peroxidase activity | 1.10E-03 |
| 37 | GO:0016740: transferase activity | 1.28E-03 |
| 38 | GO:0015078: hydrogen ion transmembrane transporter activity | 1.69E-03 |
| 39 | GO:0004864: protein phosphatase inhibitor activity | 2.37E-03 |
| 40 | GO:0047372: acylglycerol lipase activity | 2.61E-03 |
| 41 | GO:0004089: carbonate dehydratase activity | 3.12E-03 |
| 42 | GO:0004565: beta-galactosidase activity | 3.12E-03 |
| 43 | GO:0005528: FK506 binding | 4.23E-03 |
| 44 | GO:0030170: pyridoxal phosphate binding | 4.33E-03 |
| 45 | GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity | 5.13E-03 |
| 46 | GO:0008810: cellulase activity | 5.45E-03 |
| 47 | GO:0050662: coenzyme binding | 7.13E-03 |
| 48 | GO:0048038: quinone binding | 7.85E-03 |
| 49 | GO:0016788: hydrolase activity, acting on ester bonds | 8.46E-03 |
| 50 | GO:0016791: phosphatase activity | 8.97E-03 |
| 51 | GO:0052689: carboxylic ester hydrolase activity | 1.14E-02 |
| 52 | GO:0003824: catalytic activity | 1.43E-02 |
| 53 | GO:0003755: peptidyl-prolyl cis-trans isomerase activity | 1.93E-02 |
| 54 | GO:0003729: mRNA binding | 2.10E-02 |
| 55 | GO:0031625: ubiquitin protein ligase binding | 2.30E-02 |
| 56 | GO:0045330: aspartyl esterase activity | 2.30E-02 |
| 57 | GO:0030599: pectinesterase activity | 2.64E-02 |
| 58 | GO:0015035: protein disulfide oxidoreductase activity | 2.81E-02 |
| 59 | GO:0016758: transferase activity, transferring hexosyl groups | 3.17E-02 |
| 60 | GO:0019843: rRNA binding | 3.23E-02 |
| 61 | GO:0004252: serine-type endopeptidase activity | 3.48E-02 |
| 62 | GO:0046910: pectinesterase inhibitor activity | 3.86E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0009579: thylakoid | 3.07E-10 |
| 2 | GO:0009570: chloroplast stroma | 3.70E-09 |
| 3 | GO:0009941: chloroplast envelope | 5.42E-09 |
| 4 | GO:0009535: chloroplast thylakoid membrane | 1.41E-08 |
| 5 | GO:0009534: chloroplast thylakoid | 1.35E-07 |
| 6 | GO:0009507: chloroplast | 6.53E-06 |
| 7 | GO:0048046: apoplast | 1.32E-05 |
| 8 | GO:0030093: chloroplast photosystem I | 1.85E-04 |
| 9 | GO:0009897: external side of plasma membrane | 3.11E-04 |
| 10 | GO:0010319: stromule | 7.15E-04 |
| 11 | GO:0045263: proton-transporting ATP synthase complex, coupling factor F(o) | 9.24E-04 |
| 12 | GO:0009501: amyloplast | 1.48E-03 |
| 13 | GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone) | 1.91E-03 |
| 14 | GO:0000311: plastid large ribosomal subunit | 2.86E-03 |
| 15 | GO:0009508: plastid chromosome | 3.12E-03 |
| 16 | GO:0010287: plastoglobule | 3.70E-03 |
| 17 | GO:0009543: chloroplast thylakoid lumen | 3.90E-03 |
| 18 | GO:0005783: endoplasmic reticulum | 5.46E-03 |
| 19 | GO:0005618: cell wall | 6.44E-03 |
| 20 | GO:0071944: cell periphery | 8.59E-03 |
| 21 | GO:0032580: Golgi cisterna membrane | 8.97E-03 |
| 22 | GO:0009295: nucleoid | 9.36E-03 |
| 23 | GO:0030529: intracellular ribonucleoprotein complex | 1.02E-02 |
| 24 | GO:0031977: thylakoid lumen | 1.64E-02 |
| 25 | GO:0009505: plant-type cell wall | 1.69E-02 |
| 26 | GO:0009706: chloroplast inner membrane | 2.75E-02 |
| 27 | GO:0005654: nucleoplasm | 3.17E-02 |