GO Enrichment Analysis of Co-expressed Genes with
AT4G25890
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0006412: translation | 1.16E-69 |
| 2 | GO:0042254: ribosome biogenesis | 4.65E-36 |
| 3 | GO:0000027: ribosomal large subunit assembly | 2.92E-11 |
| 4 | GO:0000387: spliceosomal snRNP assembly | 2.53E-08 |
| 5 | GO:0000028: ribosomal small subunit assembly | 1.06E-06 |
| 6 | GO:1902626: assembly of large subunit precursor of preribosome | 3.35E-06 |
| 7 | GO:0000398: mRNA splicing, via spliceosome | 1.23E-04 |
| 8 | GO:0015801: aromatic amino acid transport | 1.33E-04 |
| 9 | GO:0090506: axillary shoot meristem initiation | 5.06E-04 |
| 10 | GO:0010452: histone H3-K36 methylation | 5.06E-04 |
| 11 | GO:1904278: positive regulation of wax biosynthetic process | 5.06E-04 |
| 12 | GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity | 7.24E-04 |
| 13 | GO:2000032: regulation of secondary shoot formation | 9.59E-04 |
| 14 | GO:0009165: nucleotide biosynthetic process | 9.59E-04 |
| 15 | GO:1900864: mitochondrial RNA modification | 9.59E-04 |
| 16 | GO:0006414: translational elongation | 1.25E-03 |
| 17 | GO:0045040: protein import into mitochondrial outer membrane | 1.49E-03 |
| 18 | GO:0001731: formation of translation preinitiation complex | 1.49E-03 |
| 19 | GO:0051568: histone H3-K4 methylation | 1.49E-03 |
| 20 | GO:0000245: spliceosomal complex assembly | 1.78E-03 |
| 21 | GO:0009955: adaxial/abaxial pattern specification | 1.78E-03 |
| 22 | GO:0006826: iron ion transport | 2.09E-03 |
| 23 | GO:0048589: developmental growth | 3.13E-03 |
| 24 | GO:0008283: cell proliferation | 3.40E-03 |
| 25 | GO:0010267: production of ta-siRNAs involved in RNA interference | 3.50E-03 |
| 26 | GO:0009965: leaf morphogenesis | 3.81E-03 |
| 27 | GO:0016441: posttranscriptional gene silencing | 3.89E-03 |
| 28 | GO:0010015: root morphogenesis | 4.30E-03 |
| 29 | GO:0006913: nucleocytoplasmic transport | 4.30E-03 |
| 30 | GO:0016925: protein sumoylation | 4.72E-03 |
| 31 | GO:0006626: protein targeting to mitochondrion | 5.15E-03 |
| 32 | GO:0010102: lateral root morphogenesis | 5.15E-03 |
| 33 | GO:0006446: regulation of translational initiation | 5.60E-03 |
| 34 | GO:0048467: gynoecium development | 5.60E-03 |
| 35 | GO:0010039: response to iron ion | 6.06E-03 |
| 36 | GO:0006406: mRNA export from nucleus | 7.01E-03 |
| 37 | GO:0009116: nucleoside metabolic process | 7.01E-03 |
| 38 | GO:0030150: protein import into mitochondrial matrix | 7.01E-03 |
| 39 | GO:0003333: amino acid transmembrane transport | 8.02E-03 |
| 40 | GO:0016226: iron-sulfur cluster assembly | 8.55E-03 |
| 41 | GO:0000413: protein peptidyl-prolyl isomerization | 1.08E-02 |
| 42 | GO:0015031: protein transport | 1.23E-02 |
| 43 | GO:0009409: response to cold | 1.35E-02 |
| 44 | GO:0031047: gene silencing by RNA | 1.38E-02 |
| 45 | GO:0006310: DNA recombination | 1.51E-02 |
| 46 | GO:0010252: auxin homeostasis | 1.51E-02 |
| 47 | GO:0010286: heat acclimation | 1.57E-02 |
| 48 | GO:0009651: response to salt stress | 1.76E-02 |
| 49 | GO:0009910: negative regulation of flower development | 2.29E-02 |
| 50 | GO:0006865: amino acid transport | 2.36E-02 |
| 51 | GO:0006839: mitochondrial transport | 2.68E-02 |
| 52 | GO:0009644: response to high light intensity | 3.09E-02 |
| 53 | GO:0006397: mRNA processing | 3.33E-02 |
| 54 | GO:0006260: DNA replication | 3.35E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0003735: structural constituent of ribosome | 3.83E-94 |
| 2 | GO:0003729: mRNA binding | 9.52E-15 |
| 3 | GO:0008097: 5S rRNA binding | 7.85E-06 |
| 4 | GO:0019843: rRNA binding | 1.04E-05 |
| 5 | GO:0015173: aromatic amino acid transmembrane transporter activity | 3.07E-04 |
| 6 | GO:0003723: RNA binding | 4.74E-04 |
| 7 | GO:0004749: ribose phosphate diphosphokinase activity | 7.24E-04 |
| 8 | GO:0005275: amine transmembrane transporter activity | 1.21E-03 |
| 9 | GO:0031386: protein tag | 1.21E-03 |
| 10 | GO:0001055: RNA polymerase II activity | 3.50E-03 |
| 11 | GO:0003755: peptidyl-prolyl cis-trans isomerase activity | 3.95E-03 |
| 12 | GO:0001054: RNA polymerase I activity | 4.30E-03 |
| 13 | GO:0001056: RNA polymerase III activity | 4.72E-03 |
| 14 | GO:0015266: protein channel activity | 5.15E-03 |
| 15 | GO:0000166: nucleotide binding | 1.33E-02 |
| 16 | GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity | 2.06E-02 |
| 17 | GO:0003697: single-stranded DNA binding | 2.44E-02 |
| 18 | GO:0003899: DNA-directed 5'-3' RNA polymerase activity | 3.62E-02 |
| 19 | GO:0003690: double-stranded DNA binding | 3.71E-02 |
| 20 | GO:0022857: transmembrane transporter activity | 4.45E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0097361: CIA complex | 0.00E+00 |
| 2 | GO:0043186: P granule | 0.00E+00 |
| 3 | GO:0005840: ribosome | 8.62E-71 |
| 4 | GO:0022626: cytosolic ribosome | 2.87E-58 |
| 5 | GO:0022625: cytosolic large ribosomal subunit | 8.22E-51 |
| 6 | GO:0022627: cytosolic small ribosomal subunit | 5.06E-35 |
| 7 | GO:0005737: cytoplasm | 4.22E-22 |
| 8 | GO:0005730: nucleolus | 1.78E-19 |
| 9 | GO:0005829: cytosol | 4.68E-18 |
| 10 | GO:0005732: small nucleolar ribonucleoprotein complex | 3.11E-07 |
| 11 | GO:0005774: vacuolar membrane | 7.06E-07 |
| 12 | GO:0009506: plasmodesma | 7.96E-07 |
| 13 | GO:0071011: precatalytic spliceosome | 3.03E-06 |
| 14 | GO:0034719: SMN-Sm protein complex | 3.35E-06 |
| 15 | GO:0016020: membrane | 4.74E-06 |
| 16 | GO:0071013: catalytic step 2 spliceosome | 5.28E-06 |
| 17 | GO:0019013: viral nucleocapsid | 8.49E-06 |
| 18 | GO:0005682: U5 snRNP | 1.47E-05 |
| 19 | GO:0005687: U4 snRNP | 2.41E-05 |
| 20 | GO:0097526: spliceosomal tri-snRNP complex | 2.41E-05 |
| 21 | GO:0005689: U12-type spliceosomal complex | 5.10E-05 |
| 22 | GO:0005742: mitochondrial outer membrane translocase complex | 1.12E-04 |
| 23 | GO:0005685: U1 snRNP | 1.37E-04 |
| 24 | GO:0005686: U2 snRNP | 1.96E-04 |
| 25 | GO:0005618: cell wall | 2.26E-04 |
| 26 | GO:0071010: prespliceosome | 3.07E-04 |
| 27 | GO:0034715: pICln-Sm protein complex | 5.06E-04 |
| 28 | GO:0015935: small ribosomal subunit | 5.72E-04 |
| 29 | GO:1990726: Lsm1-7-Pat1 complex | 7.24E-04 |
| 30 | GO:0000445: THO complex part of transcription export complex | 9.59E-04 |
| 31 | GO:0016593: Cdc73/Paf1 complex | 9.59E-04 |
| 32 | GO:0016282: eukaryotic 43S preinitiation complex | 1.49E-03 |
| 33 | GO:0000243: commitment complex | 1.49E-03 |
| 34 | GO:0005773: vacuole | 1.57E-03 |
| 35 | GO:0033290: eukaryotic 48S preinitiation complex | 1.78E-03 |
| 36 | GO:0005762: mitochondrial large ribosomal subunit | 1.78E-03 |
| 37 | GO:0000347: THO complex | 2.09E-03 |
| 38 | GO:0015934: large ribosomal subunit | 2.41E-03 |
| 39 | GO:0071004: U2-type prespliceosome | 2.42E-03 |
| 40 | GO:0005688: U6 snRNP | 2.42E-03 |
| 41 | GO:0046540: U4/U6 x U5 tri-snRNP complex | 2.77E-03 |
| 42 | GO:0005736: DNA-directed RNA polymerase I complex | 3.13E-03 |
| 43 | GO:0005666: DNA-directed RNA polymerase III complex | 3.50E-03 |
| 44 | GO:0016604: nuclear body | 3.50E-03 |
| 45 | GO:0000418: DNA-directed RNA polymerase IV complex | 3.89E-03 |
| 46 | GO:0031307: integral component of mitochondrial outer membrane | 4.72E-03 |
| 47 | GO:0005665: DNA-directed RNA polymerase II, core complex | 4.72E-03 |
| 48 | GO:0005681: spliceosomal complex | 5.39E-03 |
| 49 | GO:0005834: heterotrimeric G-protein complex | 5.74E-03 |
| 50 | GO:0009706: chloroplast inner membrane | 6.48E-03 |
| 51 | GO:0000419: DNA-directed RNA polymerase V complex | 6.53E-03 |
| 52 | GO:0009536: plastid | 1.16E-02 |
| 53 | GO:0000932: P-body | 1.71E-02 |
| 54 | GO:0080008: Cul4-RING E3 ubiquitin ligase complex | 1.91E-02 |
| 55 | GO:0000786: nucleosome | 2.36E-02 |
| 56 | GO:0005886: plasma membrane | 3.74E-02 |
| 57 | GO:0009507: chloroplast | 4.75E-02 |