GO Enrichment Analysis of Co-expressed Genes with
AT4G25830
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0090627: plant epidermal cell differentiation | 0.00E+00 |
| 2 | GO:1905177: tracheary element differentiation | 0.00E+00 |
| 3 | GO:0033494: ferulate metabolic process | 0.00E+00 |
| 4 | GO:0006461: protein complex assembly | 3.64E-06 |
| 5 | GO:0010623: programmed cell death involved in cell development | 1.84E-04 |
| 6 | GO:0080055: low-affinity nitrate transport | 1.84E-04 |
| 7 | GO:0010731: protein glutathionylation | 2.70E-04 |
| 8 | GO:1901000: regulation of response to salt stress | 2.70E-04 |
| 9 | GO:0030100: regulation of endocytosis | 2.70E-04 |
| 10 | GO:0010508: positive regulation of autophagy | 3.64E-04 |
| 11 | GO:2000122: negative regulation of stomatal complex development | 3.64E-04 |
| 12 | GO:0010037: response to carbon dioxide | 3.64E-04 |
| 13 | GO:0015976: carbon utilization | 3.64E-04 |
| 14 | GO:0006183: GTP biosynthetic process | 3.64E-04 |
| 15 | GO:0009913: epidermal cell differentiation | 5.67E-04 |
| 16 | GO:0047484: regulation of response to osmotic stress | 5.67E-04 |
| 17 | GO:0071470: cellular response to osmotic stress | 6.76E-04 |
| 18 | GO:0009704: de-etiolation | 9.08E-04 |
| 19 | GO:0019827: stem cell population maintenance | 9.08E-04 |
| 20 | GO:0009657: plastid organization | 1.03E-03 |
| 21 | GO:0006783: heme biosynthetic process | 1.16E-03 |
| 22 | GO:0042761: very long-chain fatty acid biosynthetic process | 1.29E-03 |
| 23 | GO:0006782: protoporphyrinogen IX biosynthetic process | 1.43E-03 |
| 24 | GO:0009735: response to cytokinin | 1.76E-03 |
| 25 | GO:0010102: lateral root morphogenesis | 1.87E-03 |
| 26 | GO:0009058: biosynthetic process | 1.94E-03 |
| 27 | GO:0010143: cutin biosynthetic process | 2.03E-03 |
| 28 | GO:0010025: wax biosynthetic process | 2.36E-03 |
| 29 | GO:0006289: nucleotide-excision repair | 2.52E-03 |
| 30 | GO:0007017: microtubule-based process | 2.70E-03 |
| 31 | GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process | 2.82E-03 |
| 32 | GO:0006012: galactose metabolic process | 3.24E-03 |
| 33 | GO:0010089: xylem development | 3.43E-03 |
| 34 | GO:0006284: base-excision repair | 3.43E-03 |
| 35 | GO:0009789: positive regulation of abscisic acid-activated signaling pathway | 3.63E-03 |
| 36 | GO:0048825: cotyledon development | 4.43E-03 |
| 37 | GO:0080167: response to karrikin | 4.80E-03 |
| 38 | GO:0015979: photosynthesis | 5.48E-03 |
| 39 | GO:0015031: protein transport | 6.50E-03 |
| 40 | GO:0015995: chlorophyll biosynthetic process | 6.69E-03 |
| 41 | GO:0009817: defense response to fungus, incompatible interaction | 7.19E-03 |
| 42 | GO:0000160: phosphorelay signal transduction system | 7.43E-03 |
| 43 | GO:0008152: metabolic process | 7.80E-03 |
| 44 | GO:0010119: regulation of stomatal movement | 7.95E-03 |
| 45 | GO:0005975: carbohydrate metabolic process | 8.14E-03 |
| 46 | GO:0006631: fatty acid metabolic process | 9.56E-03 |
| 47 | GO:0009585: red, far-red light phototransduction | 1.25E-02 |
| 48 | GO:0009736: cytokinin-activated signaling pathway | 1.25E-02 |
| 49 | GO:0006857: oligopeptide transport | 1.31E-02 |
| 50 | GO:0043086: negative regulation of catalytic activity | 1.40E-02 |
| 51 | GO:0016567: protein ubiquitination | 1.97E-02 |
| 52 | GO:0009845: seed germination | 1.99E-02 |
| 53 | GO:0006633: fatty acid biosynthetic process | 2.21E-02 |
| 54 | GO:0071555: cell wall organization | 2.56E-02 |
| 55 | GO:0042254: ribosome biogenesis | 3.27E-02 |
| 56 | GO:0010200: response to chitin | 3.85E-02 |
| 57 | GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway | 3.85E-02 |
| 58 | GO:0046686: response to cadmium ion | 3.97E-02 |
| 59 | GO:0045454: cell redox homeostasis | 4.27E-02 |
| 60 | GO:0006869: lipid transport | 4.56E-02 |
| 61 | GO:0032259: methylation | 4.81E-02 |
| 62 | GO:0006629: lipid metabolic process | 4.95E-02 |
| 63 | GO:0006281: DNA repair | 4.95E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0019146: arabinose-5-phosphate isomerase activity | 0.00E+00 |
| 2 | GO:0102193: protein-ribulosamine 3-kinase activity | 0.00E+00 |
| 3 | GO:0047538: 2-carboxy-D-arabinitol-1-phosphatase activity | 0.00E+00 |
| 4 | GO:0004853: uroporphyrinogen decarboxylase activity | 4.31E-05 |
| 5 | GO:0008534: oxidized purine nucleobase lesion DNA N-glycosylase activity | 4.31E-05 |
| 6 | GO:0004801: sedoheptulose-7-phosphate:D-glyceraldehyde-3-phosphate glyceronetransferase activity | 4.31E-05 |
| 7 | GO:0018708: thiol S-methyltransferase activity | 1.07E-04 |
| 8 | GO:0003938: IMP dehydrogenase activity | 1.07E-04 |
| 9 | GO:0045174: glutathione dehydrogenase (ascorbate) activity | 1.84E-04 |
| 10 | GO:0080054: low-affinity nitrate transmembrane transporter activity | 1.84E-04 |
| 11 | GO:0050734: hydroxycinnamoyltransferase activity | 1.84E-04 |
| 12 | GO:0019104: DNA N-glycosylase activity | 3.64E-04 |
| 13 | GO:0045300: acyl-[acyl-carrier-protein] desaturase activity | 4.63E-04 |
| 14 | GO:0016209: antioxidant activity | 9.08E-04 |
| 15 | GO:0004034: aldose 1-epimerase activity | 9.08E-04 |
| 16 | GO:0003924: GTPase activity | 9.64E-04 |
| 17 | GO:0047372: acylglycerol lipase activity | 1.57E-03 |
| 18 | GO:0004022: alcohol dehydrogenase (NAD) activity | 1.87E-03 |
| 19 | GO:0004089: carbonate dehydratase activity | 1.87E-03 |
| 20 | GO:0005528: FK506 binding | 2.52E-03 |
| 21 | GO:0005525: GTP binding | 3.69E-03 |
| 22 | GO:0016853: isomerase activity | 4.23E-03 |
| 23 | GO:0048038: quinone binding | 4.64E-03 |
| 24 | GO:0008270: zinc ion binding | 4.90E-03 |
| 25 | GO:0061630: ubiquitin protein ligase activity | 5.05E-03 |
| 26 | GO:0000156: phosphorelay response regulator activity | 5.07E-03 |
| 27 | GO:0003684: damaged DNA binding | 5.30E-03 |
| 28 | GO:0005200: structural constituent of cytoskeleton | 5.52E-03 |
| 29 | GO:0016491: oxidoreductase activity | 6.79E-03 |
| 30 | GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors | 8.47E-03 |
| 31 | GO:0004364: glutathione transferase activity | 9.83E-03 |
| 32 | GO:0008289: lipid binding | 9.85E-03 |
| 33 | GO:0003755: peptidyl-prolyl cis-trans isomerase activity | 1.13E-02 |
| 34 | GO:0003690: double-stranded DNA binding | 1.28E-02 |
| 35 | GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups | 1.44E-02 |
| 36 | GO:0004650: polygalacturonase activity | 1.50E-02 |
| 37 | GO:0016740: transferase activity | 1.54E-02 |
| 38 | GO:0016874: ligase activity | 1.54E-02 |
| 39 | GO:0019843: rRNA binding | 1.88E-02 |
| 40 | GO:0046910: pectinesterase inhibitor activity | 2.25E-02 |
| 41 | GO:0003824: catalytic activity | 2.81E-02 |
| 42 | GO:0008168: methyltransferase activity | 3.14E-02 |
| 43 | GO:0001135: transcription factor activity, RNA polymerase II transcription factor recruiting | 4.27E-02 |
| 44 | GO:0000981: RNA polymerase II transcription factor activity, sequence-specific DNA binding | 4.61E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0009570: chloroplast stroma | 5.97E-07 |
| 2 | GO:0009507: chloroplast | 1.28E-05 |
| 3 | GO:0009579: thylakoid | 3.87E-04 |
| 4 | GO:0005798: Golgi-associated vesicle | 5.67E-04 |
| 5 | GO:0009535: chloroplast thylakoid membrane | 6.09E-04 |
| 6 | GO:0031977: thylakoid lumen | 7.37E-04 |
| 7 | GO:0009533: chloroplast stromal thylakoid | 7.90E-04 |
| 8 | GO:0045298: tubulin complex | 1.16E-03 |
| 9 | GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone) | 1.16E-03 |
| 10 | GO:0009543: chloroplast thylakoid lumen | 1.84E-03 |
| 11 | GO:0030095: chloroplast photosystem II | 2.03E-03 |
| 12 | GO:0009941: chloroplast envelope | 2.22E-03 |
| 13 | GO:0005769: early endosome | 2.36E-03 |
| 14 | GO:0009534: chloroplast thylakoid | 2.49E-03 |
| 15 | GO:0009523: photosystem II | 4.43E-03 |
| 16 | GO:0010319: stromule | 5.52E-03 |
| 17 | GO:0016607: nuclear speck | 1.44E-02 |
| 18 | GO:0005874: microtubule | 3.67E-02 |
| 19 | GO:0005886: plasma membrane | 4.82E-02 |