co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT4G25680

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0071289: cellular response to nickel ion	0.00E+00
2	GO:0007141: male meiosis I	0.00E+00
3	GO:1904526: regulation of microtubule binding	0.00E+00
4	GO:0009667: plastid inner membrane organization	0.00E+00
5	GO:0035024: negative regulation of Rho protein signal transduction	0.00E+00
6	GO:0080021: response to benzoic acid	0.00E+00
7	GO:0009873: ethylene-activated signaling pathway	1.46E-07
8	GO:0009409: response to cold	3.62E-07
9	GO:0009737: response to abscisic acid	8.68E-07
10	GO:0010200: response to chitin	9.92E-07
11	GO:0009631: cold acclimation	1.03E-06
12	GO:0006970: response to osmotic stress	5.26E-06
13	GO:0009819: drought recovery	1.41E-05
14	GO:2000070: regulation of response to water deprivation	1.41E-05
15	GO:0009414: response to water deprivation	1.67E-05
16	GO:2000280: regulation of root development	3.68E-05
17	GO:0019760: glucosinolate metabolic process	7.81E-05
18	GO:0048232: male gamete generation	1.95E-04
19	GO:0035435: phosphate ion transmembrane transport	1.95E-04
20	GO:0009611: response to wounding	1.99E-04
21	GO:0045926: negative regulation of growth	2.63E-04
22	GO:0009609: response to symbiotic bacterium	3.78E-04
23	GO:1902265: abscisic acid homeostasis	3.78E-04
24	GO:0051180: vitamin transport	3.78E-04
25	GO:0030974: thiamine pyrophosphate transport	3.78E-04
26	GO:0009865: pollen tube adhesion	3.78E-04
27	GO:0006680: glucosylceramide catabolic process	3.78E-04
28	GO:0042335: cuticle development	4.16E-04
29	GO:0009415: response to water	4.26E-04
30	GO:0006633: fatty acid biosynthetic process	4.29E-04
31	GO:0042538: hyperosmotic salinity response	5.63E-04
32	GO:0071422: succinate transmembrane transport	8.22E-04
33	GO:0031407: oxylipin metabolic process	8.22E-04
34	GO:0010289: homogalacturonan biosynthetic process	8.22E-04
35	GO:0015908: fatty acid transport	8.22E-04
36	GO:0006898: receptor-mediated endocytosis	8.22E-04
37	GO:1901679: nucleotide transmembrane transport	8.22E-04
38	GO:0015786: UDP-glucose transport	8.22E-04
39	GO:0015893: drug transport	8.22E-04
40	GO:0010507: negative regulation of autophagy	8.22E-04
41	GO:0015709: thiosulfate transport	8.22E-04
42	GO:0006355: regulation of transcription, DNA-templated	9.68E-04
43	GO:0000038: very long-chain fatty acid metabolic process	9.90E-04
44	GO:0052544: defense response by callose deposition in cell wall	9.90E-04
45	GO:0050826: response to freezing	1.28E-03
46	GO:0018107: peptidyl-threonine phosphorylation	1.28E-03
47	GO:0009961: response to 1-aminocyclopropane-1-carboxylic acid	1.33E-03
48	GO:0015783: GDP-fucose transport	1.33E-03
49	GO:0080168: abscisic acid transport	1.33E-03
50	GO:0042344: indole glucosinolate catabolic process	1.33E-03
51	GO:0016045: detection of bacterium	1.33E-03
52	GO:0080121: AMP transport	1.33E-03
53	GO:0010359: regulation of anion channel activity	1.33E-03
54	GO:0090630: activation of GTPase activity	1.33E-03
55	GO:0006811: ion transport	1.51E-03
56	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	1.70E-03
57	GO:0010025: wax biosynthetic process	1.80E-03
58	GO:0009790: embryo development	1.91E-03
59	GO:0051259: protein oligomerization	1.92E-03
60	GO:0006624: vacuolar protein processing	1.92E-03
61	GO:0010371: regulation of gibberellin biosynthetic process	1.92E-03
62	GO:0015729: oxaloacetate transport	1.92E-03
63	GO:0072334: UDP-galactose transmembrane transport	1.92E-03
64	GO:0010104: regulation of ethylene-activated signaling pathway	1.92E-03
65	GO:0006351: transcription, DNA-templated	2.10E-03
66	GO:0006839: mitochondrial transport	2.13E-03
67	GO:0009695: jasmonic acid biosynthetic process	2.20E-03
68	GO:0009269: response to desiccation	2.42E-03
69	GO:0031408: oxylipin biosynthetic process	2.42E-03
70	GO:0010150: leaf senescence	2.46E-03
71	GO:0009687: abscisic acid metabolic process	2.58E-03
72	GO:0046345: abscisic acid catabolic process	2.58E-03
73	GO:0022622: root system development	2.58E-03
74	GO:0071585: detoxification of cadmium ion	2.58E-03
75	GO:0006552: leucine catabolic process	2.58E-03
76	GO:0015867: ATP transport	2.58E-03
77	GO:0001944: vasculature development	2.89E-03
78	GO:0006470: protein dephosphorylation	3.02E-03
79	GO:0009751: response to salicylic acid	3.11E-03
80	GO:0006665: sphingolipid metabolic process	3.30E-03
81	GO:0009247: glycolipid biosynthetic process	3.30E-03
82	GO:0009697: salicylic acid biosynthetic process	3.30E-03
83	GO:0070897: DNA-templated transcriptional preinitiation complex assembly	3.30E-03
84	GO:0071423: malate transmembrane transport	3.30E-03
85	GO:0009823: cytokinin catabolic process	3.30E-03
86	GO:0006656: phosphatidylcholine biosynthetic process	3.30E-03
87	GO:0006873: cellular ion homeostasis	3.30E-03
88	GO:0042631: cellular response to water deprivation	3.68E-03
89	GO:0048868: pollen tube development	3.96E-03
90	GO:0015866: ADP transport	4.08E-03
91	GO:0070814: hydrogen sulfide biosynthetic process	4.08E-03
92	GO:0047484: regulation of response to osmotic stress	4.08E-03
93	GO:1900425: negative regulation of defense response to bacterium	4.08E-03
94	GO:0010337: regulation of salicylic acid metabolic process	4.08E-03
95	GO:0006574: valine catabolic process	4.08E-03
96	GO:0009749: response to glucose	4.57E-03
97	GO:0048367: shoot system development	4.71E-03
98	GO:0000302: response to reactive oxygen species	4.89E-03
99	GO:0010555: response to mannitol	4.92E-03
100	GO:1901001: negative regulation of response to salt stress	4.92E-03
101	GO:0009082: branched-chain amino acid biosynthetic process	4.92E-03
102	GO:0098655: cation transmembrane transport	4.92E-03
103	GO:0032880: regulation of protein localization	5.81E-03
104	GO:0009864: induced systemic resistance, jasmonic acid mediated signaling pathway	5.81E-03
105	GO:0009610: response to symbiotic fungus	5.81E-03
106	GO:0006955: immune response	5.81E-03
107	GO:0030497: fatty acid elongation	5.81E-03
108	GO:0008272: sulfate transport	5.81E-03
109	GO:0030307: positive regulation of cell growth	5.81E-03
110	GO:1902074: response to salt	5.81E-03
111	GO:0010103: stomatal complex morphogenesis	5.81E-03
112	GO:0050832: defense response to fungus	5.84E-03
113	GO:0010286: heat acclimation	6.31E-03
114	GO:0007155: cell adhesion	6.75E-03
115	GO:0009061: anaerobic respiration	6.75E-03
116	GO:0035265: organ growth	6.75E-03
117	GO:0009690: cytokinin metabolic process	6.75E-03
118	GO:0019375: galactolipid biosynthetic process	6.75E-03
119	GO:0050821: protein stabilization	6.75E-03
120	GO:0009788: negative regulation of abscisic acid-activated signaling pathway	7.50E-03
121	GO:0010029: regulation of seed germination	7.50E-03
122	GO:0009651: response to salt stress	7.92E-03
123	GO:0010345: suberin biosynthetic process	8.79E-03
124	GO:0098656: anion transmembrane transport	8.79E-03
125	GO:0006098: pentose-phosphate shunt	8.79E-03
126	GO:0048268: clathrin coat assembly	9.89E-03
127	GO:0042761: very long-chain fatty acid biosynthetic process	9.89E-03
128	GO:0009641: shade avoidance	1.10E-02
129	GO:0055062: phosphate ion homeostasis	1.10E-02
130	GO:0051026: chiasma assembly	1.10E-02
131	GO:0000103: sulfate assimilation	1.10E-02
132	GO:0007623: circadian rhythm	1.15E-02
133	GO:0045490: pectin catabolic process	1.15E-02
134	GO:0010015: root morphogenesis	1.22E-02
135	GO:0009682: induced systemic resistance	1.22E-02
136	GO:0018119: peptidyl-cysteine S-nitrosylation	1.22E-02
137	GO:0055085: transmembrane transport	1.32E-02
138	GO:0016024: CDP-diacylglycerol biosynthetic process	1.34E-02
139	GO:0045037: protein import into chloroplast stroma	1.34E-02
140	GO:0010105: negative regulation of ethylene-activated signaling pathway	1.34E-02
141	GO:0006631: fatty acid metabolic process	1.40E-02
142	GO:0009617: response to bacterium	1.44E-02
143	GO:0009725: response to hormone	1.47E-02
144	GO:2000012: regulation of auxin polar transport	1.47E-02
145	GO:0030048: actin filament-based movement	1.47E-02
146	GO:0009744: response to sucrose	1.52E-02
147	GO:0051707: response to other organism	1.52E-02
148	GO:0048467: gynoecium development	1.60E-02
149	GO:0010143: cutin biosynthetic process	1.60E-02
150	GO:0009644: response to high light intensity	1.65E-02
151	GO:0010167: response to nitrate	1.74E-02
152	GO:0010030: positive regulation of seed germination	1.74E-02
153	GO:0070588: calcium ion transmembrane transport	1.74E-02
154	GO:0006636: unsaturated fatty acid biosynthetic process	1.88E-02
155	GO:0009833: plant-type primary cell wall biogenesis	1.88E-02
156	GO:0019344: cysteine biosynthetic process	2.02E-02
157	GO:0030150: protein import into mitochondrial matrix	2.02E-02
158	GO:0007017: microtubule-based process	2.17E-02
159	GO:0051260: protein homooligomerization	2.32E-02
160	GO:0010017: red or far-red light signaling pathway	2.48E-02
161	GO:0007131: reciprocal meiotic recombination	2.48E-02
162	GO:0080092: regulation of pollen tube growth	2.48E-02
163	GO:0009831: plant-type cell wall modification involved in multidimensional cell growth	2.64E-02
164	GO:0048443: stamen development	2.80E-02
165	GO:0009416: response to light stimulus	2.83E-02
166	GO:0042545: cell wall modification	2.84E-02
167	GO:0042742: defense response to bacterium	2.92E-02
168	GO:0009624: response to nematode	2.93E-02
169	GO:0070417: cellular response to cold	2.96E-02
170	GO:0008284: positive regulation of cell proliferation	2.96E-02
171	GO:0018105: peptidyl-serine phosphorylation	3.01E-02
172	GO:0000226: microtubule cytoskeleton organization	3.13E-02
173	GO:0010268: brassinosteroid homeostasis	3.30E-02
174	GO:0009960: endosperm development	3.30E-02
175	GO:0009958: positive gravitropism	3.30E-02
176	GO:0010154: fruit development	3.30E-02
177	GO:0006814: sodium ion transport	3.48E-02
178	GO:0009646: response to absence of light	3.48E-02
179	GO:0010183: pollen tube guidance	3.66E-02
180	GO:0016132: brassinosteroid biosynthetic process	3.83E-02
181	GO:0080156: mitochondrial mRNA modification	3.83E-02
182	GO:0048510: regulation of timing of transition from vegetative to reproductive phase	3.83E-02
183	GO:0010193: response to ozone	3.83E-02
184	GO:0010583: response to cyclopentenone	4.02E-02
185	GO:0016125: sterol metabolic process	4.40E-02
186	GO:0009639: response to red or far red light	4.40E-02
187	GO:0009828: plant-type cell wall loosening	4.40E-02
188	GO:0006310: DNA recombination	4.40E-02
189	GO:0048364: root development	4.48E-02
190	GO:0009753: response to jasmonic acid	4.64E-02
191	GO:0051607: defense response to virus	4.78E-02
192	GO:0009911: positive regulation of flower development	4.98E-02
193	GO:0001666: response to hypoxia	4.98E-02
194	GO:0010027: thylakoid membrane organization	4.98E-02

Rank	GO Term	Adjusted P value
1	GO:0017048: Rho GTPase binding	0.00E+00
2	GO:0005534: galactose binding	0.00E+00
3	GO:0008419: RNA lariat debranching enzyme activity	0.00E+00
4	GO:0009922: fatty acid elongase activity	8.96E-09
5	GO:0016629: 12-oxophytodienoate reductase activity	6.42E-06
6	GO:0102336: 3-oxo-arachidoyl-CoA synthase activity	6.53E-06
7	GO:0102337: 3-oxo-cerotoyl-CoA synthase activity	6.53E-06
8	GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity	6.53E-06
9	GO:0090422: thiamine pyrophosphate transporter activity	3.78E-04
10	GO:0004105: choline-phosphate cytidylyltransferase activity	3.78E-04
11	GO:0004348: glucosylceramidase activity	3.78E-04
12	GO:0090440: abscisic acid transporter activity	3.78E-04
13	GO:0003700: transcription factor activity, sequence-specific DNA binding	5.43E-04
14	GO:0043565: sequence-specific DNA binding	7.45E-04
15	GO:0042389: omega-3 fatty acid desaturase activity	8.22E-04
16	GO:0017040: ceramidase activity	8.22E-04
17	GO:0046509: 1,2-diacylglycerol 3-beta-galactosyltransferase activity	8.22E-04
18	GO:0015117: thiosulfate transmembrane transporter activity	8.22E-04
19	GO:1901677: phosphate transmembrane transporter activity	8.22E-04
20	GO:0017022: myosin binding	8.22E-04
21	GO:0001047: core promoter binding	8.22E-04
22	GO:0044212: transcription regulatory region DNA binding	1.11E-03
23	GO:0005457: GDP-fucose transmembrane transporter activity	1.33E-03
24	GO:0004020: adenylylsulfate kinase activity	1.33E-03
25	GO:0070330: aromatase activity	1.33E-03
26	GO:0005310: dicarboxylic acid transmembrane transporter activity	1.33E-03
27	GO:0010295: (+)-abscisic acid 8'-hydroxylase activity	1.33E-03
28	GO:0015141: succinate transmembrane transporter activity	1.33E-03
29	GO:0046423: allene-oxide cyclase activity	1.33E-03
30	GO:0004383: guanylate cyclase activity	1.33E-03
31	GO:0008083: growth factor activity	1.44E-03
32	GO:0052655: L-valine transaminase activity	1.92E-03
33	GO:0001653: peptide receptor activity	1.92E-03
34	GO:0015131: oxaloacetate transmembrane transporter activity	1.92E-03
35	GO:0035250: UDP-galactosyltransferase activity	1.92E-03
36	GO:0005432: calcium:sodium antiporter activity	1.92E-03
37	GO:0003883: CTP synthase activity	1.92E-03
38	GO:0005460: UDP-glucose transmembrane transporter activity	1.92E-03
39	GO:0052656: L-isoleucine transaminase activity	1.92E-03
40	GO:0052654: L-leucine transaminase activity	1.92E-03
41	GO:0015297: antiporter activity	2.29E-03
42	GO:0004084: branched-chain-amino-acid transaminase activity	2.58E-03
43	GO:0000062: fatty-acyl-CoA binding	2.58E-03
44	GO:0004722: protein serine/threonine phosphatase activity	2.60E-03
45	GO:0016772: transferase activity, transferring phosphorus-containing groups	3.30E-03
46	GO:0010294: abscisic acid glucosyltransferase activity	3.30E-03
47	GO:0005459: UDP-galactose transmembrane transporter activity	3.30E-03
48	GO:0019139: cytokinin dehydrogenase activity	3.30E-03
49	GO:0080122: AMP transmembrane transporter activity	3.30E-03
50	GO:0018685: alkane 1-monooxygenase activity	3.30E-03
51	GO:0070696: transmembrane receptor protein serine/threonine kinase binding	3.30E-03
52	GO:0019137: thioglucosidase activity	4.08E-03
53	GO:0004366: glycerol-3-phosphate O-acyltransferase activity	4.08E-03
54	GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity	4.08E-03
55	GO:0010181: FMN binding	4.26E-03
56	GO:0015217: ADP transmembrane transporter activity	4.92E-03
57	GO:0005347: ATP transmembrane transporter activity	4.92E-03
58	GO:0016621: cinnamoyl-CoA reductase activity	5.81E-03
59	GO:0015140: malate transmembrane transporter activity	5.81E-03
60	GO:0015288: porin activity	6.75E-03
61	GO:0015491: cation:cation antiporter activity	6.75E-03
62	GO:0008308: voltage-gated anion channel activity	7.75E-03
63	GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water	7.75E-03
64	GO:0016301: kinase activity	8.50E-03
65	GO:0008757: S-adenosylmethionine-dependent methyltransferase activity	8.80E-03
66	GO:0005096: GTPase activator activity	9.74E-03
67	GO:0004675: transmembrane receptor protein serine/threonine kinase activity	1.05E-02
68	GO:0005545: 1-phosphatidylinositol binding	1.10E-02
69	GO:0015116: sulfate transmembrane transporter activity	1.34E-02
70	GO:0005262: calcium channel activity	1.47E-02
71	GO:0015114: phosphate ion transmembrane transporter activity	1.47E-02
72	GO:0015266: protein channel activity	1.47E-02
73	GO:0003774: motor activity	1.60E-02
74	GO:0042973: glucan endo-1,3-beta-D-glucosidase activity	1.60E-02
75	GO:0017025: TBP-class protein binding	1.74E-02
76	GO:0008146: sulfotransferase activity	1.74E-02
77	GO:0008289: lipid binding	1.98E-02
78	GO:0003677: DNA binding	1.99E-02
79	GO:0004674: protein serine/threonine kinase activity	2.03E-02
80	GO:0045330: aspartyl esterase activity	2.28E-02
81	GO:0004707: MAP kinase activity	2.32E-02
82	GO:0030570: pectate lyase activity	2.64E-02
83	GO:0080043: quercetin 3-O-glucosyltransferase activity	2.67E-02
84	GO:0080044: quercetin 7-O-glucosyltransferase activity	2.67E-02
85	GO:0030599: pectinesterase activity	2.76E-02
86	GO:0018024: histone-lysine N-methyltransferase activity	2.96E-02
87	GO:0016746: transferase activity, transferring acyl groups	3.01E-02
88	GO:0030276: clathrin binding	3.30E-02
89	GO:0004872: receptor activity	3.66E-02
90	GO:0004197: cysteine-type endopeptidase activity	4.02E-02
91	GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds	4.24E-02
92	GO:0016791: phosphatase activity	4.40E-02
93	GO:0004702: signal transducer, downstream of receptor, with serine/threonine kinase activity	4.59E-02
94	GO:0005200: structural constituent of cytoskeleton	4.59E-02
95	GO:0046910: pectinesterase inhibitor activity	4.69E-02

Rank	GO Term	Adjusted P value
1	GO:0034426: etioplast membrane	0.00E+00
2	GO:0070382: exocytic vesicle	3.78E-04
3	GO:0030133: transport vesicle	8.22E-04
4	GO:0031357: integral component of chloroplast inner membrane	8.22E-04
5	GO:0042170: plastid membrane	8.22E-04
6	GO:0045177: apical part of cell	1.92E-03
7	GO:0009527: plastid outer membrane	2.58E-03
8	GO:0005615: extracellular space	2.92E-03
9	GO:0046658: anchored component of plasma membrane	3.78E-03
10	GO:0031225: anchored component of membrane	6.15E-03
11	GO:0031305: integral component of mitochondrial inner membrane	6.75E-03
12	GO:0046930: pore complex	7.75E-03
13	GO:0045298: tubulin complex	8.79E-03
14	GO:0016604: nuclear body	9.89E-03
15	GO:0005743: mitochondrial inner membrane	1.08E-02
16	GO:0005618: cell wall	1.20E-02
17	GO:0005938: cell cortex	1.47E-02
18	GO:0009505: plant-type cell wall	1.58E-02
19	GO:0009941: chloroplast envelope	1.82E-02
20	GO:0005905: clathrin-coated pit	2.32E-02
21	GO:0005622: intracellular	2.34E-02
22	GO:0005744: mitochondrial inner membrane presequence translocase complex	2.80E-02
23	GO:0009706: chloroplast inner membrane	2.93E-02
24	GO:0000790: nuclear chromatin	2.96E-02
25	GO:0030136: clathrin-coated vesicle	2.96E-02
26	GO:0016021: integral component of membrane	3.11E-02
27	GO:0005770: late endosome	3.30E-02
28	GO:0005886: plasma membrane	3.87E-02
29	GO:0005694: chromosome	4.02E-02
30	GO:0016020: membrane	4.54E-02