co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT4G25670

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:1900067: regulation of cellular response to alkaline pH	0.00E+00
2	GO:2001142: nicotinate transport	0.00E+00
3	GO:0060416: response to growth hormone	0.00E+00
4	GO:0046967: cytosol to ER transport	0.00E+00
5	GO:0071629: ubiquitin-dependent catabolism of misfolded proteins by cytoplasm-associated proteasome	0.00E+00
6	GO:0009268: response to pH	0.00E+00
7	GO:0032499: detection of peptidoglycan	0.00E+00
8	GO:2001143: N-methylnicotinate transport	0.00E+00
9	GO:0002752: cell surface pattern recognition receptor signaling pathway	0.00E+00
10	GO:0010200: response to chitin	9.87E-14
11	GO:0042218: 1-aminocyclopropane-1-carboxylate biosynthetic process	7.54E-06
12	GO:0002679: respiratory burst involved in defense response	1.73E-05
13	GO:0034440: lipid oxidation	3.17E-05
14	GO:0009695: jasmonic acid biosynthetic process	5.85E-05
15	GO:0009611: response to wounding	9.15E-05
16	GO:0080086: stamen filament development	1.04E-04
17	GO:0006955: immune response	1.37E-04
18	GO:0045010: actin nucleation	1.76E-04
19	GO:0051180: vitamin transport	2.09E-04
20	GO:0007229: integrin-mediated signaling pathway	2.09E-04
21	GO:0030974: thiamine pyrophosphate transport	2.09E-04
22	GO:0050691: regulation of defense response to virus by host	2.09E-04
23	GO:0032491: detection of molecule of fungal origin	2.09E-04
24	GO:1900384: regulation of flavonol biosynthetic process	2.09E-04
25	GO:0051865: protein autoubiquitination	2.65E-04
26	GO:0009835: fruit ripening	2.65E-04
27	GO:0010372: positive regulation of gibberellin biosynthetic process	4.66E-04
28	GO:0044419: interspecies interaction between organisms	4.66E-04
29	GO:0015893: drug transport	4.66E-04
30	GO:0006741: NADP biosynthetic process	4.66E-04
31	GO:0080148: negative regulation of response to water deprivation	4.66E-04
32	GO:0046939: nucleotide phosphorylation	4.66E-04
33	GO:0042754: negative regulation of circadian rhythm	4.66E-04
34	GO:0042742: defense response to bacterium	4.97E-04
35	GO:0009901: anther dehiscence	7.02E-04
36	GO:0034427: nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5'	7.59E-04
37	GO:0080168: abscisic acid transport	7.59E-04
38	GO:0010366: negative regulation of ethylene biosynthetic process	7.59E-04
39	GO:0019674: NAD metabolic process	7.59E-04
40	GO:0006470: protein dephosphorylation	8.09E-04
41	GO:0031408: oxylipin biosynthetic process	1.04E-03
42	GO:0043207: response to external biotic stimulus	1.08E-03
43	GO:0030100: regulation of endocytosis	1.08E-03
44	GO:0009399: nitrogen fixation	1.08E-03
45	GO:0033014: tetrapyrrole biosynthetic process	1.08E-03
46	GO:0071323: cellular response to chitin	1.08E-03
47	GO:0019363: pyridine nucleotide biosynthetic process	1.08E-03
48	GO:0006952: defense response	1.11E-03
49	GO:0009693: ethylene biosynthetic process	1.23E-03
50	GO:0009686: gibberellin biosynthetic process	1.23E-03
51	GO:0040007: growth	1.23E-03
52	GO:0006085: acetyl-CoA biosynthetic process	1.44E-03
53	GO:0010107: potassium ion import	1.44E-03
54	GO:0006749: glutathione metabolic process	1.44E-03
55	GO:0071219: cellular response to molecule of bacterial origin	1.44E-03
56	GO:1902347: response to strigolactone	1.44E-03
57	GO:0015743: malate transport	1.44E-03
58	GO:0048653: anther development	1.56E-03
59	GO:0009620: response to fungus	1.69E-03
60	GO:0048544: recognition of pollen	1.81E-03
61	GO:0009164: nucleoside catabolic process	1.83E-03
62	GO:0045487: gibberellin catabolic process	1.83E-03
63	GO:0030041: actin filament polymerization	1.83E-03
64	GO:0048317: seed morphogenesis	2.26E-03
65	GO:0006796: phosphate-containing compound metabolic process	2.26E-03
66	GO:1900425: negative regulation of defense response to bacterium	2.26E-03
67	GO:0010337: regulation of salicylic acid metabolic process	2.26E-03
68	GO:0006014: D-ribose metabolic process	2.26E-03
69	GO:0006777: Mo-molybdopterin cofactor biosynthetic process	2.26E-03
70	GO:0009651: response to salt stress	2.43E-03
71	GO:0009737: response to abscisic acid	2.61E-03
72	GO:0015937: coenzyme A biosynthetic process	3.20E-03
73	GO:1900057: positive regulation of leaf senescence	3.20E-03
74	GO:0006401: RNA catabolic process	3.20E-03
75	GO:0009753: response to jasmonic acid	3.55E-03
76	GO:1900150: regulation of defense response to fungus	3.71E-03
77	GO:0006402: mRNA catabolic process	3.71E-03
78	GO:0009704: de-etiolation	3.71E-03
79	GO:2000070: regulation of response to water deprivation	3.71E-03
80	GO:0010311: lateral root formation	4.08E-03
81	GO:0009699: phenylpropanoid biosynthetic process	4.24E-03
82	GO:0009932: cell tip growth	4.24E-03
83	GO:0048193: Golgi vesicle transport	4.24E-03
84	GO:0009873: ethylene-activated signaling pathway	4.70E-03
85	GO:0009617: response to bacterium	4.75E-03
86	GO:0090333: regulation of stomatal closure	4.80E-03
87	GO:0006783: heme biosynthetic process	4.80E-03
88	GO:0045087: innate immune response	4.91E-03
89	GO:0006779: porphyrin-containing compound biosynthetic process	5.38E-03
90	GO:0009086: methionine biosynthetic process	5.38E-03
91	GO:0008202: steroid metabolic process	5.38E-03
92	GO:0006782: protoporphyrinogen IX biosynthetic process	5.99E-03
93	GO:0019538: protein metabolic process	5.99E-03
94	GO:0007064: mitotic sister chromatid cohesion	5.99E-03
95	GO:0048829: root cap development	5.99E-03
96	GO:0051707: response to other organism	6.33E-03
97	GO:0010015: root morphogenesis	6.62E-03
98	GO:0072593: reactive oxygen species metabolic process	6.62E-03
99	GO:1903507: negative regulation of nucleic acid-templated transcription	6.62E-03
100	GO:0009636: response to toxic substance	7.11E-03
101	GO:0006970: response to osmotic stress	7.26E-03
102	GO:0010105: negative regulation of ethylene-activated signaling pathway	7.28E-03
103	GO:0009555: pollen development	7.62E-03
104	GO:0031347: regulation of defense response	7.66E-03
105	GO:0018107: peptidyl-threonine phosphorylation	7.96E-03
106	GO:0055046: microgametogenesis	7.96E-03
107	GO:0009809: lignin biosynthetic process	8.54E-03
108	GO:0034605: cellular response to heat	8.66E-03
109	GO:0002237: response to molecule of bacterial origin	8.66E-03
110	GO:0080167: response to karrikin	8.69E-03
111	GO:0071732: cellular response to nitric oxide	9.37E-03
112	GO:0009863: salicylic acid mediated signaling pathway	1.09E-02
113	GO:0043622: cortical microtubule organization	1.17E-02
114	GO:0098542: defense response to other organism	1.25E-02
115	GO:0030245: cellulose catabolic process	1.33E-02
116	GO:0016226: iron-sulfur cluster assembly	1.33E-02
117	GO:2000022: regulation of jasmonic acid mediated signaling pathway	1.33E-02
118	GO:0030433: ubiquitin-dependent ERAD pathway	1.33E-02
119	GO:0046686: response to cadmium ion	1.40E-02
120	GO:0071369: cellular response to ethylene stimulus	1.41E-02
121	GO:0006817: phosphate ion transport	1.50E-02
122	GO:0019722: calcium-mediated signaling	1.50E-02
123	GO:0009306: protein secretion	1.50E-02
124	GO:0010118: stomatal movement	1.68E-02
125	GO:0006468: protein phosphorylation	1.70E-02
126	GO:0009960: endosperm development	1.77E-02
127	GO:0009749: response to glucose	1.96E-02
128	GO:0019252: starch biosynthetic process	1.96E-02
129	GO:0002229: defense response to oomycetes	2.06E-02
130	GO:0010193: response to ozone	2.06E-02
131	GO:0007623: circadian rhythm	2.11E-02
132	GO:0009414: response to water deprivation	2.13E-02
133	GO:0031047: gene silencing by RNA	2.15E-02
134	GO:0006979: response to oxidative stress	2.23E-02
135	GO:0071281: cellular response to iron ion	2.25E-02
136	GO:1901657: glycosyl compound metabolic process	2.25E-02
137	GO:0019760: glucosinolate metabolic process	2.36E-02
138	GO:0009639: response to red or far red light	2.36E-02
139	GO:0010286: heat acclimation	2.46E-02
140	GO:0016579: protein deubiquitination	2.57E-02
141	GO:0001666: response to hypoxia	2.67E-02
142	GO:0009788: negative regulation of abscisic acid-activated signaling pathway	2.78E-02
143	GO:0009738: abscisic acid-activated signaling pathway	2.82E-02
144	GO:0015995: chlorophyll biosynthetic process	3.00E-02
145	GO:0016310: phosphorylation	3.01E-02
146	GO:0035556: intracellular signal transduction	3.14E-02
147	GO:0009817: defense response to fungus, incompatible interaction	3.23E-02
148	GO:0008219: cell death	3.23E-02
149	GO:0009407: toxin catabolic process	3.46E-02
150	GO:0045893: positive regulation of transcription, DNA-templated	3.48E-02
151	GO:0048527: lateral root development	3.58E-02
152	GO:0009723: response to ethylene	3.78E-02
153	GO:0009867: jasmonic acid mediated signaling pathway	3.82E-02
154	GO:0016051: carbohydrate biosynthetic process	3.82E-02
155	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	4.18E-02
156	GO:0006839: mitochondrial transport	4.19E-02
157	GO:0006351: transcription, DNA-templated	4.22E-02
158	GO:0016567: protein ubiquitination	4.29E-02
159	GO:0046777: protein autophosphorylation	4.32E-02
160	GO:0006897: endocytosis	4.32E-02
161	GO:0009644: response to high light intensity	4.84E-02

Rank	GO Term	Adjusted P value
1	GO:0005522: profilin binding	0.00E+00
2	GO:2001080: chitosan binding	0.00E+00
3	GO:0090417: N-methylnicotinate transporter activity	0.00E+00
4	GO:0061798: GTP 3',8'-cyclase activity	0.00E+00
5	GO:0090416: nicotinate transporter activity	0.00E+00
6	GO:0016165: linoleate 13S-lipoxygenase activity	7.54E-06
7	GO:0016847: 1-aminocyclopropane-1-carboxylate synthase activity	1.76E-04
8	GO:0090422: thiamine pyrophosphate transporter activity	2.09E-04
9	GO:0090440: abscisic acid transporter activity	2.09E-04
10	GO:0047150: betaine-homocysteine S-methyltransferase activity	2.09E-04
11	GO:0042736: NADH kinase activity	2.09E-04
12	GO:0008898: S-adenosylmethionine-homocysteine S-methyltransferase activity	4.66E-04
13	GO:0004103: choline kinase activity	4.66E-04
14	GO:0008883: glutamyl-tRNA reductase activity	4.66E-04
15	GO:0004594: pantothenate kinase activity	4.66E-04
16	GO:0046423: allene-oxide cyclase activity	7.59E-04
17	GO:0004383: guanylate cyclase activity	7.59E-04
18	GO:0016301: kinase activity	8.33E-04
19	GO:0019201: nucleotide kinase activity	1.08E-03
20	GO:0052634: C-19 gibberellin 2-beta-dioxygenase activity	1.08E-03
21	GO:0001653: peptide receptor activity	1.08E-03
22	GO:0004715: non-membrane spanning protein tyrosine kinase activity	1.08E-03
23	GO:0003865: 3-oxo-5-alpha-steroid 4-dehydrogenase activity	1.08E-03
24	GO:0043015: gamma-tubulin binding	1.44E-03
25	GO:0019199: transmembrane receptor protein kinase activity	1.44E-03
26	GO:0005253: anion channel activity	1.44E-03
27	GO:0004659: prenyltransferase activity	1.44E-03
28	GO:0047631: ADP-ribose diphosphatase activity	1.83E-03
29	GO:0004356: glutamate-ammonia ligase activity	1.83E-03
30	GO:0000210: NAD+ diphosphatase activity	2.26E-03
31	GO:0043565: sequence-specific DNA binding	2.44E-03
32	GO:0004722: protein serine/threonine phosphatase activity	2.67E-03
33	GO:0016818: hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	2.71E-03
34	GO:0003950: NAD+ ADP-ribosyltransferase activity	2.71E-03
35	GO:0004747: ribokinase activity	2.71E-03
36	GO:0004017: adenylate kinase activity	2.71E-03
37	GO:0019900: kinase binding	2.71E-03
38	GO:0102425: myricetin 3-O-glucosyltransferase activity	3.20E-03
39	GO:0102360: daphnetin 3-O-glucosyltransferase activity	3.20E-03
40	GO:0004427: inorganic diphosphatase activity	3.20E-03
41	GO:0016621: cinnamoyl-CoA reductase activity	3.20E-03
42	GO:0015140: malate transmembrane transporter activity	3.20E-03
43	GO:0008143: poly(A) binding	3.20E-03
44	GO:0047893: flavonol 3-O-glucosyltransferase activity	3.71E-03
45	GO:0008865: fructokinase activity	3.71E-03
46	GO:0052747: sinapyl alcohol dehydrogenase activity	3.71E-03
47	GO:0008142: oxysterol binding	4.24E-03
48	GO:0003951: NAD+ kinase activity	4.24E-03
49	GO:0016614: oxidoreductase activity, acting on CH-OH group of donors	4.48E-03
50	GO:0016627: oxidoreductase activity, acting on the CH-CH group of donors	4.80E-03
51	GO:0004712: protein serine/threonine/tyrosine kinase activity	5.36E-03
52	GO:0047617: acyl-CoA hydrolase activity	5.38E-03
53	GO:0004864: protein phosphatase inhibitor activity	5.99E-03
54	GO:0004713: protein tyrosine kinase activity	5.99E-03
55	GO:0044212: transcription regulatory region DNA binding	6.48E-03
56	GO:0004860: protein kinase inhibitor activity	6.62E-03
57	GO:0045551: cinnamyl-alcohol dehydrogenase activity	7.28E-03
58	GO:0019888: protein phosphatase regulator activity	7.96E-03
59	GO:0000175: 3'-5'-exoribonuclease activity	7.96E-03
60	GO:0042973: glucan endo-1,3-beta-D-glucosidase activity	8.66E-03
61	GO:0008061: chitin binding	9.37E-03
62	GO:0003714: transcription corepressor activity	1.09E-02
63	GO:0051087: chaperone binding	1.17E-02
64	GO:0003779: actin binding	1.18E-02
65	GO:0035251: UDP-glucosyltransferase activity	1.25E-02
66	GO:0004540: ribonuclease activity	1.25E-02
67	GO:0019706: protein-cysteine S-palmitoyltransferase activity	1.25E-02
68	GO:0004672: protein kinase activity	1.26E-02
69	GO:0022891: substrate-specific transmembrane transporter activity	1.41E-02
70	GO:0005524: ATP binding	1.51E-02
71	GO:0004674: protein serine/threonine kinase activity	1.58E-02
72	GO:0030170: pyridoxal phosphate binding	1.70E-02
73	GO:0016853: isomerase activity	1.86E-02
74	GO:0050662: coenzyme binding	1.86E-02
75	GO:0019901: protein kinase binding	1.96E-02
76	GO:0004843: thiol-dependent ubiquitin-specific protease activity	2.06E-02
77	GO:0004518: nuclease activity	2.15E-02
78	GO:0051015: actin filament binding	2.25E-02
79	GO:0004702: signal transducer, downstream of receptor, with serine/threonine kinase activity	2.46E-02
80	GO:0008375: acetylglucosaminyltransferase activity	2.89E-02
81	GO:0102483: scopolin beta-glucosidase activity	3.00E-02
82	GO:0004721: phosphoprotein phosphatase activity	3.00E-02
83	GO:0015238: drug transmembrane transporter activity	3.34E-02
84	GO:0004842: ubiquitin-protein transferase activity	3.54E-02
85	GO:0050660: flavin adenine dinucleotide binding	3.78E-02
86	GO:0008422: beta-glucosidase activity	4.07E-02
87	GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds	4.14E-02
88	GO:0050661: NADP binding	4.19E-02
89	GO:0051539: 4 iron, 4 sulfur cluster binding	4.19E-02
90	GO:0030246: carbohydrate binding	4.23E-02
91	GO:0004364: glutathione transferase activity	4.45E-02
92	GO:0001135: transcription factor activity, RNA polymerase II transcription factor recruiting	4.83E-02
93	GO:0043621: protein self-association	4.84E-02
94	GO:0035091: phosphatidylinositol binding	4.84E-02
95	GO:0051537: 2 iron, 2 sulfur cluster binding	4.84E-02

Rank	GO Term	Adjusted P value
1	GO:0005737: cytoplasm	2.08E-04
2	GO:0005911: cell-cell junction	2.09E-04
3	GO:0016442: RISC complex	2.09E-04
4	GO:0019008: molybdopterin synthase complex	2.09E-04
5	GO:0010494: cytoplasmic stress granule	2.65E-04
6	GO:0090404: pollen tube tip	4.29E-04
7	GO:0005886: plasma membrane	1.36E-03
8	GO:0000178: exosome (RNase complex)	1.83E-03
9	GO:0016363: nuclear matrix	2.71E-03
10	GO:0000932: P-body	2.98E-03
11	GO:0005829: cytosol	3.99E-03
12	GO:0000159: protein phosphatase type 2A complex	6.62E-03
13	GO:0071013: catalytic step 2 spliceosome	6.62E-03
14	GO:0048471: perinuclear region of cytoplasm	6.62E-03
15	GO:0005758: mitochondrial intermembrane space	1.09E-02
16	GO:0031225: anchored component of membrane	1.49E-02
17	GO:0030136: clathrin-coated vesicle	1.59E-02
18	GO:0005770: late endosome	1.77E-02
19	GO:0005778: peroxisomal membrane	2.46E-02
20	GO:0046658: anchored component of plasma membrane	2.80E-02
21	GO:0019005: SCF ubiquitin ligase complex	3.23E-02
22	GO:0009707: chloroplast outer membrane	3.23E-02
23	GO:0031902: late endosome membrane	4.32E-02
24	GO:0090406: pollen tube	4.57E-02