Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT4G25520

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0051562: negative regulation of mitochondrial calcium ion concentration0.00E+00
2GO:0045595: regulation of cell differentiation0.00E+00
3GO:0080050: regulation of seed development0.00E+00
4GO:0042353: fucose biosynthetic process0.00E+00
5GO:0007141: male meiosis I0.00E+00
6GO:0034775: glutathione transmembrane transport0.00E+00
7GO:0035024: negative regulation of Rho protein signal transduction0.00E+00
8GO:2000636: positive regulation of primary miRNA processing0.00E+00
9GO:0010046: response to mycotoxin0.00E+00
10GO:0032953: regulation of (1->3)-beta-D-glucan biosynthetic process0.00E+00
11GO:0046398: UDP-glucuronate metabolic process0.00E+00
12GO:0052573: UDP-D-galactose metabolic process0.00E+00
13GO:2000630: positive regulation of miRNA metabolic process0.00E+00
14GO:0098755: maintenance of seed dormancy by absisic acid0.00E+00
15GO:0010200: response to chitin7.90E-12
16GO:0006468: protein phosphorylation3.87E-07
17GO:0006751: glutathione catabolic process2.48E-06
18GO:0009611: response to wounding2.82E-06
19GO:0006955: immune response6.86E-06
20GO:0042344: indole glucosinolate catabolic process1.79E-05
21GO:0006970: response to osmotic stress2.62E-05
22GO:0052544: defense response by callose deposition in cell wall4.56E-05
23GO:0006811: ion transport1.51E-04
24GO:0010337: regulation of salicylic acid metabolic process1.60E-04
25GO:0009873: ethylene-activated signaling pathway2.27E-04
26GO:0009864: induced systemic resistance, jasmonic acid mediated signaling pathway2.83E-04
27GO:0009609: response to symbiotic bacterium3.34E-04
28GO:1902265: abscisic acid homeostasis3.34E-04
29GO:0030974: thiamine pyrophosphate transport3.34E-04
30GO:0046938: phytochelatin biosynthetic process3.34E-04
31GO:0009865: pollen tube adhesion3.34E-04
32GO:0051446: positive regulation of meiotic cell cycle3.34E-04
33GO:0050691: regulation of defense response to virus by host3.34E-04
34GO:0006680: glucosylceramide catabolic process3.34E-04
35GO:0034620: cellular response to unfolded protein3.34E-04
36GO:0090421: embryonic meristem initiation3.34E-04
37GO:0051180: vitamin transport3.34E-04
38GO:2000070: regulation of response to water deprivation3.55E-04
39GO:0007166: cell surface receptor signaling pathway4.66E-04
40GO:0098656: anion transmembrane transport5.24E-04
41GO:0009751: response to salicylic acid5.52E-04
42GO:2000280: regulation of root development6.19E-04
43GO:2000030: regulation of response to red or far red light7.29E-04
44GO:1901679: nucleotide transmembrane transport7.29E-04
45GO:0006898: receptor-mediated endocytosis7.29E-04
46GO:0015893: drug transport7.29E-04
47GO:0052542: defense response by callose deposition7.29E-04
48GO:0008616: queuosine biosynthetic process7.29E-04
49GO:0031407: oxylipin metabolic process7.29E-04
50GO:0010289: homogalacturonan biosynthetic process7.29E-04
51GO:0007000: nucleolus organization7.29E-04
52GO:0051211: anisotropic cell growth1.18E-03
53GO:0000280: nuclear division1.18E-03
54GO:0016045: detection of bacterium1.18E-03
55GO:0006473: protein acetylation1.18E-03
56GO:0010359: regulation of anion channel activity1.18E-03
57GO:0080121: AMP transport1.18E-03
58GO:0010288: response to lead ion1.18E-03
59GO:0045793: positive regulation of cell size1.18E-03
60GO:0090630: activation of GTPase activity1.18E-03
61GO:0009961: response to 1-aminocyclopropane-1-carboxylic acid1.18E-03
62GO:0006011: UDP-glucose metabolic process1.18E-03
63GO:0034427: nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5'1.18E-03
64GO:0080168: abscisic acid transport1.18E-03
65GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway1.23E-03
66GO:0070588: calcium ion transmembrane transport1.35E-03
67GO:0009737: response to abscisic acid1.54E-03
68GO:0009863: salicylic acid mediated signaling pathway1.66E-03
69GO:0033014: tetrapyrrole biosynthetic process1.70E-03
70GO:0009226: nucleotide-sugar biosynthetic process1.70E-03
71GO:0030100: regulation of endocytosis1.70E-03
72GO:0015696: ammonium transport1.70E-03
73GO:0015700: arsenite transport1.70E-03
74GO:0006355: regulation of transcription, DNA-templated1.92E-03
75GO:0051707: response to other organism1.98E-03
76GO:0031408: oxylipin biosynthetic process2.02E-03
77GO:0010017: red or far-red light signaling pathway2.21E-03
78GO:0006470: protein dephosphorylation2.28E-03
79GO:0033356: UDP-L-arabinose metabolic process2.28E-03
80GO:0042991: transcription factor import into nucleus2.28E-03
81GO:0015867: ATP transport2.28E-03
82GO:1902347: response to strigolactone2.28E-03
83GO:0009694: jasmonic acid metabolic process2.28E-03
84GO:0009687: abscisic acid metabolic process2.28E-03
85GO:0045727: positive regulation of translation2.28E-03
86GO:0072488: ammonium transmembrane transport2.28E-03
87GO:0010468: regulation of gene expression2.44E-03
88GO:0070897: DNA-templated transcriptional preinitiation complex assembly2.91E-03
89GO:0006873: cellular ion homeostasis2.91E-03
90GO:0048497: maintenance of floral organ identity2.91E-03
91GO:0051225: spindle assembly2.91E-03
92GO:0006665: sphingolipid metabolic process2.91E-03
93GO:0032957: inositol trisphosphate metabolic process2.91E-03
94GO:0009960: endosperm development3.30E-03
95GO:0035435: phosphate ion transmembrane transport3.60E-03
96GO:0015866: ADP transport3.60E-03
97GO:0010256: endomembrane system organization3.60E-03
98GO:0048232: male gamete generation3.60E-03
99GO:0010193: response to ozone4.08E-03
100GO:0098655: cation transmembrane transport4.33E-03
101GO:0080113: regulation of seed growth4.33E-03
102GO:0009861: jasmonic acid and ethylene-dependent systemic resistance4.33E-03
103GO:0010555: response to mannitol4.33E-03
104GO:1902074: response to salt5.11E-03
105GO:0006401: RNA catabolic process5.11E-03
106GO:0000398: mRNA splicing, via spliceosome5.44E-03
107GO:0009819: drought recovery5.94E-03
108GO:1900150: regulation of defense response to fungus5.94E-03
109GO:0007155: cell adhesion5.94E-03
110GO:0010029: regulation of seed germination6.23E-03
111GO:0009414: response to water deprivation6.80E-03
112GO:0009880: embryonic pattern specification6.81E-03
113GO:0048193: Golgi vesicle transport6.81E-03
114GO:0006979: response to oxidative stress7.24E-03
115GO:0008219: cell death7.70E-03
116GO:0090305: nucleic acid phosphodiester bond hydrolysis7.73E-03
117GO:0000184: nuclear-transcribed mRNA catabolic process, nonsense-mediated decay7.73E-03
118GO:0006783: heme biosynthetic process7.73E-03
119GO:0001708: cell fate specification7.73E-03
120GO:0046685: response to arsenic-containing substance7.73E-03
121GO:0051865: protein autoubiquitination7.73E-03
122GO:0010018: far-red light signaling pathway8.68E-03
123GO:0007346: regulation of mitotic cell cycle8.68E-03
124GO:0016573: histone acetylation8.68E-03
125GO:0006779: porphyrin-containing compound biosynthetic process8.68E-03
126GO:0006782: protoporphyrinogen IX biosynthetic process9.69E-03
127GO:0051026: chiasma assembly9.69E-03
128GO:0019538: protein metabolic process9.69E-03
129GO:0009688: abscisic acid biosynthetic process9.69E-03
130GO:0055062: phosphate ion homeostasis9.69E-03
131GO:0009753: response to jasmonic acid1.01E-02
132GO:0009682: induced systemic resistance1.07E-02
133GO:0008285: negative regulation of cell proliferation1.07E-02
134GO:0010015: root morphogenesis1.07E-02
135GO:0006816: calcium ion transport1.07E-02
136GO:0006839: mitochondrial transport1.12E-02
137GO:0010105: negative regulation of ethylene-activated signaling pathway1.18E-02
138GO:0071365: cellular response to auxin stimulus1.18E-02
139GO:0000266: mitochondrial fission1.18E-02
140GO:0009651: response to salt stress1.24E-02
141GO:0009409: response to cold1.28E-02
142GO:0018107: peptidyl-threonine phosphorylation1.29E-02
143GO:0055046: microgametogenesis1.29E-02
144GO:0002237: response to molecule of bacterial origin1.41E-02
145GO:0034605: cellular response to heat1.41E-02
146GO:0080188: RNA-directed DNA methylation1.53E-02
147GO:0071732: cellular response to nitric oxide1.53E-02
148GO:0010030: positive regulation of seed germination1.53E-02
149GO:0009969: xyloglucan biosynthetic process1.53E-02
150GO:0042538: hyperosmotic salinity response1.59E-02
151GO:0042753: positive regulation of circadian rhythm1.65E-02
152GO:0006636: unsaturated fatty acid biosynthetic process1.65E-02
153GO:0006364: rRNA processing1.71E-02
154GO:0009585: red, far-red light phototransduction1.71E-02
155GO:0009736: cytokinin-activated signaling pathway1.71E-02
156GO:0006952: defense response1.73E-02
157GO:2000377: regulation of reactive oxygen species metabolic process1.77E-02
158GO:0009695: jasmonic acid biosynthetic process1.90E-02
159GO:0043622: cortical microtubule organization1.90E-02
160GO:0051302: regulation of cell division1.90E-02
161GO:0051321: meiotic cell cycle2.03E-02
162GO:0009269: response to desiccation2.03E-02
163GO:0048367: shoot system development2.09E-02
164GO:0042742: defense response to bacterium2.14E-02
165GO:0009626: plant-type hypersensitive response2.15E-02
166GO:0007131: reciprocal meiotic recombination2.17E-02
167GO:0031348: negative regulation of defense response2.17E-02
168GO:0080092: regulation of pollen tube growth2.17E-02
169GO:0071456: cellular response to hypoxia2.17E-02
170GO:0030245: cellulose catabolic process2.17E-02
171GO:0009620: response to fungus2.22E-02
172GO:0071369: cellular response to ethylene stimulus2.31E-02
173GO:0001944: vasculature development2.31E-02
174GO:0035556: intracellular signal transduction2.33E-02
175GO:0009624: response to nematode2.43E-02
176GO:0048443: stamen development2.45E-02
177GO:0010089: xylem development2.45E-02
178GO:0010584: pollen exine formation2.45E-02
179GO:0006817: phosphate ion transport2.45E-02
180GO:0009742: brassinosteroid mediated signaling pathway2.58E-02
181GO:0008284: positive regulation of cell proliferation2.60E-02
182GO:0045893: positive regulation of transcription, DNA-templated2.64E-02
183GO:0045892: negative regulation of transcription, DNA-templated2.66E-02
184GO:0000271: polysaccharide biosynthetic process2.74E-02
185GO:0010501: RNA secondary structure unwinding2.74E-02
186GO:0006351: transcription, DNA-templated2.76E-02
187GO:0045489: pectin biosynthetic process2.89E-02
188GO:0071472: cellular response to salt stress2.89E-02
189GO:0010154: fruit development2.89E-02
190GO:0048868: pollen tube development2.89E-02
191GO:0048544: recognition of pollen3.05E-02
192GO:0006814: sodium ion transport3.05E-02
193GO:0010183: pollen tube guidance3.20E-02
194GO:0009749: response to glucose3.20E-02
195GO:0009845: seed germination3.30E-02
196GO:0000302: response to reactive oxygen species3.36E-02
197GO:0080156: mitochondrial mRNA modification3.36E-02
198GO:0009790: embryo development3.55E-02
199GO:0071281: cellular response to iron ion3.69E-02
200GO:0010090: trichome morphogenesis3.69E-02
201GO:1901657: glycosyl compound metabolic process3.69E-02
202GO:0006633: fatty acid biosynthetic process3.82E-02
203GO:0019760: glucosinolate metabolic process3.85E-02
204GO:0009639: response to red or far red light3.85E-02
205GO:0006310: DNA recombination3.85E-02
206GO:0016310: phosphorylation3.91E-02
207GO:0006904: vesicle docking involved in exocytosis4.02E-02
208GO:0010286: heat acclimation4.02E-02
209GO:0006810: transport4.05E-02
210GO:0007623: circadian rhythm4.19E-02
211GO:0010150: leaf senescence4.19E-02
212GO:0051607: defense response to virus4.19E-02
213GO:0000910: cytokinesis4.19E-02
214GO:0001666: response to hypoxia4.37E-02
215GO:0046686: response to cadmium ion4.45E-02
216GO:0009816: defense response to bacterium, incompatible interaction4.54E-02
217GO:0009788: negative regulation of abscisic acid-activated signaling pathway4.54E-02
218GO:0009627: systemic acquired resistance4.72E-02
219GO:0015995: chlorophyll biosynthetic process4.90E-02
220GO:0009617: response to bacterium4.99E-02
RankGO TermAdjusted P value
1GO:0008419: RNA lariat debranching enzyme activity0.00E+00
2GO:0070566: adenylyltransferase activity0.00E+00
3GO:0017048: Rho GTPase binding0.00E+00
4GO:0017103: UTP:galactose-1-phosphate uridylyltransferase activity0.00E+00
5GO:0051748: UTP-monosaccharide-1-phosphate uridylyltransferase activity0.00E+00
6GO:0047338: UTP:xylose-1-phosphate uridylyltransferase activity0.00E+00
7GO:0047350: glucuronate-1-phosphate uridylyltransferase activity0.00E+00
8GO:0080123: jasmonate-amino synthetase activity0.00E+00
9GO:0010491: UTP:arabinose-1-phosphate uridylyltransferase activity0.00E+00
10GO:0016756: glutathione gamma-glutamylcysteinyltransferase activity1.96E-07
11GO:0016629: 12-oxophytodienoate reductase activity5.06E-06
12GO:0016301: kinase activity7.77E-06
13GO:0003840: gamma-glutamyltransferase activity1.79E-05
14GO:0036374: glutathione hydrolase activity1.79E-05
15GO:0004675: transmembrane receptor protein serine/threonine kinase activity4.42E-05
16GO:0015398: high-affinity secondary active ammonium transmembrane transporter activity3.34E-04
17GO:0015446: ATPase-coupled arsenite transmembrane transporter activity3.34E-04
18GO:0004348: glucosylceramidase activity3.34E-04
19GO:0071992: phytochelatin transmembrane transporter activity3.34E-04
20GO:0090440: abscisic acid transporter activity3.34E-04
21GO:0090422: thiamine pyrophosphate transporter activity3.34E-04
22GO:0015085: calcium ion transmembrane transporter activity3.34E-04
23GO:0046870: cadmium ion binding3.34E-04
24GO:0004674: protein serine/threonine kinase activity3.43E-04
25GO:0005524: ATP binding5.53E-04
26GO:0017022: myosin binding7.29E-04
27GO:0004103: choline kinase activity7.29E-04
28GO:0008883: glutamyl-tRNA reductase activity7.29E-04
29GO:0001047: core promoter binding7.29E-04
30GO:0042389: omega-3 fatty acid desaturase activity7.29E-04
31GO:0017040: ceramidase activity7.29E-04
32GO:0003839: gamma-glutamylcyclotransferase activity7.29E-04
33GO:0008479: queuine tRNA-ribosyltransferase activity7.29E-04
34GO:0019888: protein phosphatase regulator activity1.07E-03
35GO:0052726: inositol-1,3,4-trisphosphate 5-kinase activity1.18E-03
36GO:0004383: guanylate cyclase activity1.18E-03
37GO:0003983: UTP:glucose-1-phosphate uridylyltransferase activity1.18E-03
38GO:0047325: inositol tetrakisphosphate 1-kinase activity1.18E-03
39GO:0048487: beta-tubulin binding1.70E-03
40GO:0003883: CTP synthase activity1.70E-03
41GO:0005432: calcium:sodium antiporter activity1.70E-03
42GO:0052725: inositol-1,3,4-trisphosphate 6-kinase activity1.70E-03
43GO:0001653: peptide receptor activity1.70E-03
44GO:0004722: protein serine/threonine phosphatase activity1.88E-03
45GO:0080122: AMP transmembrane transporter activity2.91E-03
46GO:0045549: 9-cis-epoxycarotenoid dioxygenase activity2.91E-03
47GO:0070696: transmembrane receptor protein serine/threonine kinase binding2.91E-03
48GO:0010294: abscisic acid glucosyltransferase activity2.91E-03
49GO:0009922: fatty acid elongase activity2.91E-03
50GO:0051011: microtubule minus-end binding2.91E-03
51GO:0010181: FMN binding3.55E-03
52GO:0019137: thioglucosidase activity3.60E-03
53GO:0008519: ammonium transmembrane transporter activity3.60E-03
54GO:0005347: ATP transmembrane transporter activity4.33E-03
55GO:0051020: GTPase binding4.33E-03
56GO:0015217: ADP transmembrane transporter activity4.33E-03
57GO:0003700: transcription factor activity, sequence-specific DNA binding4.57E-03
58GO:0019899: enzyme binding5.11E-03
59GO:0102425: myricetin 3-O-glucosyltransferase activity5.11E-03
60GO:0102360: daphnetin 3-O-glucosyltransferase activity5.11E-03
61GO:0004702: signal transducer, downstream of receptor, with serine/threonine kinase activity5.25E-03
62GO:0004672: protein kinase activity5.27E-03
63GO:0015491: cation:cation antiporter activity5.94E-03
64GO:0047893: flavonol 3-O-glucosyltransferase activity5.94E-03
65GO:0008308: voltage-gated anion channel activity6.81E-03
66GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water6.81E-03
67GO:0102483: scopolin beta-glucosidase activity6.94E-03
68GO:0044212: transcription regulatory region DNA binding7.13E-03
69GO:0005096: GTPase activator activity8.09E-03
70GO:0003677: DNA binding8.94E-03
71GO:0004713: protein tyrosine kinase activity9.69E-03
72GO:0008422: beta-glucosidase activity1.07E-02
73GO:0005388: calcium-transporting ATPase activity1.29E-02
74GO:0000175: 3'-5'-exoribonuclease activity1.29E-02
75GO:0005315: inorganic phosphate transmembrane transporter activity1.29E-02
76GO:0005262: calcium channel activity1.29E-02
77GO:0015114: phosphate ion transmembrane transporter activity1.29E-02
78GO:0004842: ubiquitin-protein transferase activity1.34E-02
79GO:0043565: sequence-specific DNA binding1.42E-02
80GO:0017025: TBP-class protein binding1.53E-02
81GO:0003712: transcription cofactor activity1.53E-02
82GO:0102337: 3-oxo-cerotoyl-CoA synthase activity1.65E-02
83GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity1.65E-02
84GO:0102336: 3-oxo-arachidoyl-CoA synthase activity1.65E-02
85GO:0004540: ribonuclease activity2.03E-02
86GO:0004707: MAP kinase activity2.03E-02
87GO:0035251: UDP-glucosyltransferase activity2.03E-02
88GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity2.17E-02
89GO:0080043: quercetin 3-O-glucosyltransferase activity2.22E-02
90GO:0080044: quercetin 7-O-glucosyltransferase activity2.22E-02
91GO:0008514: organic anion transmembrane transporter activity2.45E-02
92GO:0004402: histone acetyltransferase activity2.74E-02
93GO:0016758: transferase activity, transferring hexosyl groups2.97E-02
94GO:0046872: metal ion binding3.25E-02
95GO:0004518: nuclease activity3.52E-02
96GO:0015297: antiporter activity4.01E-02
97GO:0016597: amino acid binding4.19E-02
98GO:0008194: UDP-glycosyltransferase activity4.68E-02
99GO:0004806: triglyceride lipase activity4.90E-02
100GO:0004721: phosphoprotein phosphatase activity4.90E-02
101GO:0004004: ATP-dependent RNA helicase activity4.90E-02
RankGO TermAdjusted P value
1GO:0070382: exocytic vesicle3.34E-04
2GO:0042170: plastid membrane7.29E-04
3GO:0030133: transport vesicle7.29E-04
4GO:0000159: protein phosphatase type 2A complex8.32E-04
5GO:0070652: HAUS complex1.18E-03
6GO:0070062: extracellular exosome1.70E-03
7GO:0045177: apical part of cell1.70E-03
8GO:0000178: exosome (RNase complex)2.91E-03
9GO:0031463: Cul3-RING ubiquitin ligase complex3.60E-03
10GO:0000793: condensed chromosome3.60E-03
11GO:0030173: integral component of Golgi membrane4.33E-03
12GO:0000794: condensed nuclear chromosome5.11E-03
13GO:0005634: nucleus6.92E-03
14GO:0005743: mitochondrial inner membrane8.14E-03
15GO:0016604: nuclear body8.68E-03
16GO:0005876: spindle microtubule8.68E-03
17GO:0015030: Cajal body8.68E-03
18GO:0031902: late endosome membrane1.16E-02
19GO:0090406: pollen tube1.26E-02
20GO:0005938: cell cortex1.29E-02
21GO:0005737: cytoplasm1.67E-02
22GO:0005758: mitochondrial intermembrane space1.77E-02
23GO:0005768: endosome1.79E-02
24GO:0005681: spliceosomal complex2.02E-02
25GO:0005886: plasma membrane2.07E-02
26GO:0010008: endosome membrane2.09E-02
27GO:0000790: nuclear chromatin2.60E-02
28GO:0030136: clathrin-coated vesicle2.60E-02
29GO:0016021: integral component of membrane2.85E-02
30GO:0005770: late endosome2.89E-02
31GO:0000145: exocyst3.52E-02
32GO:0032580: Golgi cisterna membrane3.85E-02
33GO:0000932: P-body4.37E-02
34GO:0005667: transcription factor complex4.72E-02
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Gene type



Gene DE type





AT4G25350