co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT4G25490

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0090627: plant epidermal cell differentiation	0.00E+00
2	GO:0090279: regulation of calcium ion import	0.00E+00
3	GO:1905177: tracheary element differentiation	0.00E+00
4	GO:0071474: cellular hyperosmotic response	0.00E+00
5	GO:1905421: regulation of plant organ morphogenesis	0.00E+00
6	GO:0002184: cytoplasmic translational termination	0.00E+00
7	GO:0030155: regulation of cell adhesion	0.00E+00
8	GO:2000042: negative regulation of double-strand break repair via homologous recombination	0.00E+00
9	GO:0007172: signal complex assembly	0.00E+00
10	GO:0018023: peptidyl-lysine trimethylation	0.00E+00
11	GO:0018026: peptidyl-lysine monomethylation	3.13E-06
12	GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly	2.55E-05
13	GO:0043007: maintenance of rDNA	2.60E-04
14	GO:0000023: maltose metabolic process	2.60E-04
15	GO:0006431: methionyl-tRNA aminoacylation	2.60E-04
16	GO:0000025: maltose catabolic process	2.60E-04
17	GO:0005980: glycogen catabolic process	2.60E-04
18	GO:0032544: plastid translation	3.02E-04
19	GO:0010027: thylakoid membrane organization	4.82E-04
20	GO:0006782: protoporphyrinogen IX biosynthetic process	5.06E-04
21	GO:0005976: polysaccharide metabolic process	5.74E-04
22	GO:0090342: regulation of cell aging	5.74E-04
23	GO:0031648: protein destabilization	5.74E-04
24	GO:0030388: fructose 1,6-bisphosphate metabolic process	5.74E-04
25	GO:0051262: protein tetramerization	5.74E-04
26	GO:0009773: photosynthetic electron transport in photosystem I	5.84E-04
27	GO:0005983: starch catabolic process	6.67E-04
28	GO:0006094: gluconeogenesis	7.57E-04
29	GO:0009266: response to temperature stimulus	8.52E-04
30	GO:0010623: programmed cell death involved in cell development	9.31E-04
31	GO:0048281: inflorescence morphogenesis	9.31E-04
32	GO:0006000: fructose metabolic process	9.31E-04
33	GO:0009405: pathogenesis	9.31E-04
34	GO:1901332: negative regulation of lateral root development	1.33E-03
35	GO:0010148: transpiration	1.33E-03
36	GO:0061077: chaperone-mediated protein folding	1.41E-03
37	GO:0010017: red or far-red light signaling pathway	1.54E-03
38	GO:0001944: vasculature development	1.68E-03
39	GO:0010021: amylopectin biosynthetic process	1.78E-03
40	GO:0006808: regulation of nitrogen utilization	1.78E-03
41	GO:0010023: proanthocyanidin biosynthetic process	1.78E-03
42	GO:0051322: anaphase	1.78E-03
43	GO:0010600: regulation of auxin biosynthetic process	1.78E-03
44	GO:0010508: positive regulation of autophagy	1.78E-03
45	GO:0051205: protein insertion into membrane	1.78E-03
46	GO:0006749: glutathione metabolic process	1.78E-03
47	GO:0015846: polyamine transport	1.78E-03
48	GO:0009658: chloroplast organization	2.06E-03
49	GO:0045038: protein import into chloroplast thylakoid membrane	2.27E-03
50	GO:0035434: copper ion transmembrane transport	2.27E-03
51	GO:0016120: carotene biosynthetic process	2.27E-03
52	GO:0042793: transcription from plastid promoter	2.80E-03
53	GO:0010190: cytochrome b6f complex assembly	2.80E-03
54	GO:0000470: maturation of LSU-rRNA	2.80E-03
55	GO:0009913: epidermal cell differentiation	2.80E-03
56	GO:0006458: 'de novo' protein folding	3.36E-03
57	GO:0010244: response to low fluence blue light stimulus by blue low-fluence system	3.36E-03
58	GO:0042026: protein refolding	3.36E-03
59	GO:0070370: cellular heat acclimation	3.97E-03
60	GO:0010103: stomatal complex morphogenesis	3.97E-03
61	GO:0010161: red light signaling pathway	3.97E-03
62	GO:0009704: de-etiolation	4.60E-03
63	GO:0010928: regulation of auxin mediated signaling pathway	4.60E-03
64	GO:0005978: glycogen biosynthetic process	4.60E-03
65	GO:0006353: DNA-templated transcription, termination	4.60E-03
66	GO:0030091: protein repair	4.60E-03
67	GO:0015995: chlorophyll biosynthetic process	4.80E-03
68	GO:0006002: fructose 6-phosphate metabolic process	5.27E-03
69	GO:0001558: regulation of cell growth	5.27E-03
70	GO:0009407: toxin catabolic process	5.87E-03
71	GO:0006783: heme biosynthetic process	5.98E-03
72	GO:0051865: protein autoubiquitination	5.98E-03
73	GO:0005982: starch metabolic process	6.71E-03
74	GO:0006779: porphyrin-containing compound biosynthetic process	6.71E-03
75	GO:0042761: very long-chain fatty acid biosynthetic process	6.71E-03
76	GO:0048829: root cap development	7.47E-03
77	GO:0031627: telomeric loop formation	7.47E-03
78	GO:0009073: aromatic amino acid family biosynthetic process	8.27E-03
79	GO:0009750: response to fructose	8.27E-03
80	GO:0006415: translational termination	8.27E-03
81	GO:0071365: cellular response to auxin stimulus	9.09E-03
82	GO:0002213: defense response to insect	9.09E-03
83	GO:0009636: response to toxic substance	9.79E-03
84	GO:0010628: positive regulation of gene expression	9.94E-03
85	GO:0018107: peptidyl-threonine phosphorylation	9.94E-03
86	GO:0009718: anthocyanin-containing compound biosynthetic process	9.94E-03
87	GO:0005986: sucrose biosynthetic process	9.94E-03
88	GO:0010102: lateral root morphogenesis	9.94E-03
89	GO:0009934: regulation of meristem structural organization	1.08E-02
90	GO:0006302: double-strand break repair	1.08E-02
91	GO:0010025: wax biosynthetic process	1.27E-02
92	GO:0080167: response to karrikin	1.30E-02
93	GO:0009944: polarity specification of adaxial/abaxial axis	1.36E-02
94	GO:0006825: copper ion transport	1.46E-02
95	GO:0051302: regulation of cell division	1.46E-02
96	GO:0006418: tRNA aminoacylation for protein translation	1.46E-02
97	GO:0007017: microtubule-based process	1.46E-02
98	GO:0015979: photosynthesis	1.54E-02
99	GO:0051321: meiotic cell cycle	1.56E-02
100	GO:0003333: amino acid transmembrane transport	1.56E-02
101	GO:0019915: lipid storage	1.56E-02
102	GO:2000022: regulation of jasmonic acid mediated signaling pathway	1.67E-02
103	GO:0019748: secondary metabolic process	1.67E-02
104	GO:0009686: gibberellin biosynthetic process	1.77E-02
105	GO:0010089: xylem development	1.88E-02
106	GO:0016117: carotenoid biosynthetic process	1.99E-02
107	GO:0006629: lipid metabolic process	2.13E-02
108	GO:0006810: transport	2.18E-02
109	GO:0006885: regulation of pH	2.22E-02
110	GO:0008152: metabolic process	2.41E-02
111	GO:0048825: cotyledon development	2.46E-02
112	GO:0019252: starch biosynthetic process	2.46E-02
113	GO:0048235: pollen sperm cell differentiation	2.70E-02
114	GO:1901657: glycosyl compound metabolic process	2.83E-02
115	GO:0030163: protein catabolic process	2.83E-02
116	GO:0006310: DNA recombination	2.96E-02
117	GO:0000910: cytokinesis	3.22E-02
118	GO:0016126: sterol biosynthetic process	3.35E-02
119	GO:0055114: oxidation-reduction process	3.45E-02
120	GO:0009607: response to biotic stimulus	3.49E-02
121	GO:0009627: systemic acquired resistance	3.63E-02
122	GO:0016311: dephosphorylation	3.91E-02
123	GO:0048481: plant ovule development	4.05E-02
124	GO:0009817: defense response to fungus, incompatible interaction	4.05E-02
125	GO:0000160: phosphorelay signal transduction system	4.20E-02
126	GO:0009834: plant-type secondary cell wall biogenesis	4.34E-02
127	GO:0009631: cold acclimation	4.49E-02
128	GO:0006970: response to osmotic stress	4.81E-02

Rank	GO Term	Adjusted P value
1	GO:0008807: carboxyvinyl-carboxyphosphonate phosphorylmutase activity	0.00E+00
2	GO:0009899: ent-kaurene synthase activity	0.00E+00
3	GO:0102193: protein-ribulosamine 3-kinase activity	0.00E+00
4	GO:0016166: phytoene dehydrogenase activity	0.00E+00
5	GO:0016279: protein-lysine N-methyltransferase activity	4.61E-05
6	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	4.61E-05
7	GO:0004134: 4-alpha-glucanotransferase activity	2.60E-04
8	GO:0004645: phosphorylase activity	2.60E-04
9	GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity	2.60E-04
10	GO:0004825: methionine-tRNA ligase activity	2.60E-04
11	GO:0042286: glutamate-1-semialdehyde 2,1-aminomutase activity	2.60E-04
12	GO:0005227: calcium activated cation channel activity	2.60E-04
13	GO:0008184: glycogen phosphorylase activity	2.60E-04
14	GO:0004853: uroporphyrinogen decarboxylase activity	2.60E-04
15	GO:0048038: quinone binding	2.96E-04
16	GO:0016868: intramolecular transferase activity, phosphotransferases	5.74E-04
17	GO:0010297: heteropolysaccharide binding	5.74E-04
18	GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity	5.74E-04
19	GO:0047158: sinapoylglucose-sinapoylglucose O-sinapoyltransferase activity	5.74E-04
20	GO:0018708: thiol S-methyltransferase activity	5.74E-04
21	GO:0003844: 1,4-alpha-glucan branching enzyme activity	5.74E-04
22	GO:0044183: protein binding involved in protein folding	5.84E-04
23	GO:0047372: acylglycerol lipase activity	5.84E-04
24	GO:0090729: toxin activity	9.31E-04
25	GO:0043169: cation binding	9.31E-04
26	GO:0017150: tRNA dihydrouridine synthase activity	9.31E-04
27	GO:0016149: translation release factor activity, codon specific	1.33E-03
28	GO:0043023: ribosomal large subunit binding	1.33E-03
29	GO:0015203: polyamine transmembrane transporter activity	1.33E-03
30	GO:0042277: peptide binding	1.78E-03
31	GO:0004506: squalene monooxygenase activity	1.78E-03
32	GO:0019199: transmembrane receptor protein kinase activity	1.78E-03
33	GO:2001070: starch binding	2.80E-03
34	GO:0004332: fructose-bisphosphate aldolase activity	2.80E-03
35	GO:0004602: glutathione peroxidase activity	3.36E-03
36	GO:0033743: peptide-methionine (R)-S-oxide reductase activity	3.36E-03
37	GO:0005261: cation channel activity	3.36E-03
38	GO:0004033: aldo-keto reductase (NADP) activity	4.60E-03
39	GO:0005375: copper ion transmembrane transporter activity	5.27E-03
40	GO:0003747: translation release factor activity	5.98E-03
41	GO:0015174: basic amino acid transmembrane transporter activity	6.71E-03
42	GO:0003691: double-stranded telomeric DNA binding	8.27E-03
43	GO:0004364: glutathione transferase activity	8.36E-03
44	GO:0008378: galactosyltransferase activity	9.09E-03
45	GO:0043621: protein self-association	9.42E-03
46	GO:0004022: alcohol dehydrogenase (NAD) activity	9.94E-03
47	GO:0004565: beta-galactosidase activity	9.94E-03
48	GO:0004190: aspartic-type endopeptidase activity	1.17E-02
49	GO:0005528: FK506 binding	1.36E-02
50	GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups	1.44E-02
51	GO:0033612: receptor serine/threonine kinase binding	1.56E-02
52	GO:0008408: 3'-5' exonuclease activity	1.56E-02
53	GO:0004871: signal transducer activity	1.74E-02
54	GO:0004812: aminoacyl-tRNA ligase activity	1.99E-02
55	GO:0019843: rRNA binding	2.10E-02
56	GO:0005451: monovalent cation:proton antiporter activity	2.11E-02
57	GO:0030170: pyridoxal phosphate binding	2.33E-02
58	GO:0009055: electron carrier activity	2.33E-02
59	GO:0015299: solute:proton antiporter activity	2.34E-02
60	GO:0000156: phosphorelay response regulator activity	2.83E-02
61	GO:0015385: sodium:proton antiporter activity	2.83E-02
62	GO:0005200: structural constituent of cytoskeleton	3.09E-02
63	GO:0008483: transaminase activity	3.09E-02
64	GO:0004702: signal transducer, downstream of receptor, with serine/threonine kinase activity	3.09E-02
65	GO:0016597: amino acid binding	3.22E-02
66	GO:0008289: lipid binding	3.23E-02
67	GO:0008375: acetylglucosaminyltransferase activity	3.63E-02
68	GO:0102483: scopolin beta-glucosidase activity	3.77E-02
69	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	4.05E-02
70	GO:0008168: methyltransferase activity	4.31E-02
71	GO:0000287: magnesium ion binding	4.39E-02
72	GO:0030145: manganese ion binding	4.49E-02
73	GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	4.79E-02

Rank	GO Term	Adjusted P value
1	GO:0009507: chloroplast	1.59E-11
2	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	1.41E-07
3	GO:0009570: chloroplast stroma	9.68E-07
4	GO:0009535: chloroplast thylakoid membrane	1.71E-06
5	GO:0009534: chloroplast thylakoid	9.61E-06
6	GO:0009941: chloroplast envelope	2.21E-04
7	GO:0000791: euchromatin	2.60E-04
8	GO:0030870: Mre11 complex	5.74E-04
9	GO:0000427: plastid-encoded plastid RNA polymerase complex	5.74E-04
10	GO:0009509: chromoplast	9.31E-04
11	GO:0030915: Smc5-Smc6 complex	2.27E-03
12	GO:0000795: synaptonemal complex	2.27E-03
13	GO:0010287: plastoglobule	3.52E-03
14	GO:0009295: nucleoid	3.64E-03
15	GO:0009543: chloroplast thylakoid lumen	3.77E-03
16	GO:0009579: thylakoid	4.51E-03
17	GO:0009501: amyloplast	4.60E-03
18	GO:0009538: photosystem I reaction center	4.60E-03
19	GO:0000783: nuclear telomere cap complex	5.27E-03
20	GO:0010494: cytoplasmic stress granule	5.98E-03
21	GO:0045298: tubulin complex	5.98E-03
22	GO:0009508: plastid chromosome	9.94E-03
23	GO:0009574: preprophase band	9.94E-03
24	GO:0030095: chloroplast photosystem II	1.08E-02
25	GO:0005874: microtubule	1.25E-02
26	GO:0042651: thylakoid membrane	1.46E-02
27	GO:0009654: photosystem II oxygen evolving complex	1.46E-02
28	GO:0009536: plastid	1.61E-02
29	GO:0019898: extrinsic component of membrane	2.46E-02
30	GO:0000785: chromatin	2.70E-02
31	GO:0000932: P-body	3.35E-02
32	GO:0015934: large ribosomal subunit	4.49E-02
33	GO:0000325: plant-type vacuole	4.49E-02