co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT4G25470

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:1905421: regulation of plant organ morphogenesis	0.00E+00
2	GO:0002184: cytoplasmic translational termination	0.00E+00
3	GO:2000469: negative regulation of peroxidase activity	0.00E+00
4	GO:0030155: regulation of cell adhesion	0.00E+00
5	GO:0090706: specification of plant organ position	0.00E+00
6	GO:2000042: negative regulation of double-strand break repair via homologous recombination	0.00E+00
7	GO:0007172: signal complex assembly	0.00E+00
8	GO:0018023: peptidyl-lysine trimethylation	0.00E+00
9	GO:0090279: regulation of calcium ion import	0.00E+00
10	GO:0090697: post-embryonic plant organ morphogenesis	0.00E+00
11	GO:0080127: fruit septum development	0.00E+00
12	GO:0015727: lactate transport	0.00E+00
13	GO:0071474: cellular hyperosmotic response	0.00E+00
14	GO:0010966: regulation of phosphate transport	0.00E+00
15	GO:0010027: thylakoid membrane organization	4.99E-06
16	GO:0018026: peptidyl-lysine monomethylation	5.43E-06
17	GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly	4.24E-05
18	GO:0009773: photosynthetic electron transport in photosystem I	4.96E-05
19	GO:0042549: photosystem II stabilization	1.70E-04
20	GO:0043007: maintenance of rDNA	3.47E-04
21	GO:0010028: xanthophyll cycle	3.47E-04
22	GO:0010450: inflorescence meristem growth	3.47E-04
23	GO:0000023: maltose metabolic process	3.47E-04
24	GO:0000025: maltose catabolic process	3.47E-04
25	GO:0005980: glycogen catabolic process	3.47E-04
26	GO:0000476: maturation of 4.5S rRNA	3.47E-04
27	GO:0000967: rRNA 5'-end processing	3.47E-04
28	GO:0043686: co-translational protein modification	3.47E-04
29	GO:0032544: plastid translation	4.61E-04
30	GO:0016122: xanthophyll metabolic process	7.56E-04
31	GO:0006521: regulation of cellular amino acid metabolic process	7.56E-04
32	GO:0030388: fructose 1,6-bisphosphate metabolic process	7.56E-04
33	GO:0080181: lateral root branching	7.56E-04
34	GO:0051262: protein tetramerization	7.56E-04
35	GO:0034470: ncRNA processing	7.56E-04
36	GO:0005976: polysaccharide metabolic process	7.56E-04
37	GO:0090342: regulation of cell aging	7.56E-04
38	GO:0031648: protein destabilization	7.56E-04
39	GO:0006782: protoporphyrinogen IX biosynthetic process	7.61E-04
40	GO:0009658: chloroplast organization	8.82E-04
41	GO:0005983: starch catabolic process	1.00E-03
42	GO:0015995: chlorophyll biosynthetic process	1.00E-03
43	GO:0006094: gluconeogenesis	1.13E-03
44	GO:0045165: cell fate commitment	1.22E-03
45	GO:0048281: inflorescence morphogenesis	1.22E-03
46	GO:0006000: fructose metabolic process	1.22E-03
47	GO:0009405: pathogenesis	1.22E-03
48	GO:0016050: vesicle organization	1.22E-03
49	GO:0009266: response to temperature stimulus	1.27E-03
50	GO:0015979: photosynthesis	1.62E-03
51	GO:0010239: chloroplast mRNA processing	1.76E-03
52	GO:0010148: transpiration	1.76E-03
53	GO:0009944: polarity specification of adaxial/abaxial axis	1.76E-03
54	GO:1901332: negative regulation of lateral root development	1.76E-03
55	GO:0010321: regulation of vegetative phase change	1.76E-03
56	GO:0061077: chaperone-mediated protein folding	2.13E-03
57	GO:0010017: red or far-red light signaling pathway	2.33E-03
58	GO:0006808: regulation of nitrogen utilization	2.37E-03
59	GO:0010023: proanthocyanidin biosynthetic process	2.37E-03
60	GO:0015994: chlorophyll metabolic process	2.37E-03
61	GO:0022622: root system development	2.37E-03
62	GO:0010600: regulation of auxin biosynthetic process	2.37E-03
63	GO:0006552: leucine catabolic process	2.37E-03
64	GO:0051205: protein insertion into membrane	2.37E-03
65	GO:0015846: polyamine transport	2.37E-03
66	GO:0010021: amylopectin biosynthetic process	2.37E-03
67	GO:1902183: regulation of shoot apical meristem development	3.03E-03
68	GO:0010158: abaxial cell fate specification	3.03E-03
69	GO:0006465: signal peptide processing	3.03E-03
70	GO:0045038: protein import into chloroplast thylakoid membrane	3.03E-03
71	GO:0031365: N-terminal protein amino acid modification	3.03E-03
72	GO:0042793: transcription from plastid promoter	3.74E-03
73	GO:0010190: cytochrome b6f complex assembly	3.74E-03
74	GO:0003006: developmental process involved in reproduction	3.74E-03
75	GO:0009646: response to absence of light	3.75E-03
76	GO:0010244: response to low fluence blue light stimulus by blue low-fluence system	4.50E-03
77	GO:0042026: protein refolding	4.50E-03
78	GO:1901259: chloroplast rRNA processing	4.50E-03
79	GO:0006458: 'de novo' protein folding	4.50E-03
80	GO:0030488: tRNA methylation	4.50E-03
81	GO:0032502: developmental process	4.60E-03
82	GO:0010103: stomatal complex morphogenesis	5.32E-03
83	GO:0032880: regulation of protein localization	5.32E-03
84	GO:0010161: red light signaling pathway	5.32E-03
85	GO:0070370: cellular heat acclimation	5.32E-03
86	GO:0000122: negative regulation of transcription from RNA polymerase II promoter	5.32E-03
87	GO:0022904: respiratory electron transport chain	5.32E-03
88	GO:0030307: positive regulation of cell growth	5.32E-03
89	GO:0080167: response to karrikin	5.47E-03
90	GO:0010928: regulation of auxin mediated signaling pathway	6.17E-03
91	GO:0005978: glycogen biosynthetic process	6.17E-03
92	GO:0006353: DNA-templated transcription, termination	6.17E-03
93	GO:0030091: protein repair	6.17E-03
94	GO:0009704: de-etiolation	6.17E-03
95	GO:0010093: specification of floral organ identity	7.08E-03
96	GO:0006002: fructose 6-phosphate metabolic process	7.08E-03
97	GO:0001558: regulation of cell growth	7.08E-03
98	GO:0016311: dephosphorylation	7.74E-03
99	GO:0048507: meristem development	8.04E-03
100	GO:0051865: protein autoubiquitination	8.04E-03
101	GO:2000024: regulation of leaf development	8.04E-03
102	GO:0006783: heme biosynthetic process	8.04E-03
103	GO:0005982: starch metabolic process	9.03E-03
104	GO:0006779: porphyrin-containing compound biosynthetic process	9.03E-03
105	GO:0048527: lateral root development	9.43E-03
106	GO:0045490: pectin catabolic process	9.78E-03
107	GO:0031627: telomeric loop formation	1.01E-02
108	GO:0048829: root cap development	1.01E-02
109	GO:0010015: root morphogenesis	1.12E-02
110	GO:0006415: translational termination	1.12E-02
111	GO:0019684: photosynthesis, light reaction	1.12E-02
112	GO:0009089: lysine biosynthetic process via diaminopimelate	1.12E-02
113	GO:0009073: aromatic amino acid family biosynthetic process	1.12E-02
114	GO:0009750: response to fructose	1.12E-02
115	GO:0008152: metabolic process	1.15E-02
116	GO:0071365: cellular response to auxin stimulus	1.23E-02
117	GO:0010582: floral meristem determinacy	1.23E-02
118	GO:0018107: peptidyl-threonine phosphorylation	1.34E-02
119	GO:0009718: anthocyanin-containing compound biosynthetic process	1.34E-02
120	GO:0005986: sucrose biosynthetic process	1.34E-02
121	GO:2000012: regulation of auxin polar transport	1.34E-02
122	GO:0010628: positive regulation of gene expression	1.34E-02
123	GO:0009934: regulation of meristem structural organization	1.46E-02
124	GO:0006302: double-strand break repair	1.46E-02
125	GO:0048467: gynoecium development	1.46E-02
126	GO:0009933: meristem structural organization	1.46E-02
127	GO:0010207: photosystem II assembly	1.46E-02
128	GO:0010030: positive regulation of seed germination	1.59E-02
129	GO:0006810: transport	1.67E-02
130	GO:0051302: regulation of cell division	1.98E-02
131	GO:0007017: microtubule-based process	1.98E-02
132	GO:0009909: regulation of flower development	2.00E-02
133	GO:0019915: lipid storage	2.12E-02
134	GO:0051321: meiotic cell cycle	2.12E-02
135	GO:0003333: amino acid transmembrane transport	2.12E-02
136	GO:0019748: secondary metabolic process	2.26E-02
137	GO:0030245: cellulose catabolic process	2.26E-02
138	GO:0035428: hexose transmembrane transport	2.26E-02
139	GO:2000022: regulation of jasmonic acid mediated signaling pathway	2.26E-02
140	GO:0009686: gibberellin biosynthetic process	2.40E-02
141	GO:0001944: vasculature development	2.40E-02
142	GO:0009789: positive regulation of abscisic acid-activated signaling pathway	2.70E-02
143	GO:0070417: cellular response to cold	2.70E-02
144	GO:0008284: positive regulation of cell proliferation	2.70E-02
145	GO:0042631: cellular response to water deprivation	2.85E-02
146	GO:0046323: glucose import	3.01E-02
147	GO:0010154: fruit development	3.01E-02
148	GO:0009958: positive gravitropism	3.01E-02
149	GO:0019252: starch biosynthetic process	3.33E-02
150	GO:0071554: cell wall organization or biogenesis	3.50E-02
151	GO:0006635: fatty acid beta-oxidation	3.50E-02
152	GO:0009751: response to salicylic acid	3.57E-02
153	GO:0010583: response to cyclopentenone	3.67E-02
154	GO:0009790: embryo development	3.76E-02
155	GO:1901657: glycosyl compound metabolic process	3.84E-02
156	GO:0030163: protein catabolic process	3.84E-02
157	GO:0010252: auxin homeostasis	4.01E-02
158	GO:0016126: sterol biosynthetic process	4.55E-02
159	GO:0001666: response to hypoxia	4.55E-02
160	GO:0009607: response to biotic stimulus	4.73E-02
161	GO:0009627: systemic acquired resistance	4.91E-02
162	GO:0009739: response to gibberellin	4.95E-02

Rank	GO Term	Adjusted P value
1	GO:0043783: oxidoreductase activity, oxidizing metal ions with flavin as acceptor	0.00E+00
2	GO:0102193: protein-ribulosamine 3-kinase activity	0.00E+00
3	GO:0015129: lactate transmembrane transporter activity	0.00E+00
4	GO:0046422: violaxanthin de-epoxidase activity	0.00E+00
5	GO:0004174: electron-transferring-flavoprotein dehydrogenase activity	0.00E+00
6	GO:0008807: carboxyvinyl-carboxyphosphonate phosphorylmutase activity	0.00E+00
7	GO:0048039: ubiquinone binding	0.00E+00
8	GO:0009899: ent-kaurene synthase activity	0.00E+00
9	GO:0016279: protein-lysine N-methyltransferase activity	7.53E-05
10	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	7.53E-05
11	GO:0030570: pectate lyase activity	2.54E-04
12	GO:0042286: glutamate-1-semialdehyde 2,1-aminomutase activity	3.47E-04
13	GO:0005227: calcium activated cation channel activity	3.47E-04
14	GO:0008184: glycogen phosphorylase activity	3.47E-04
15	GO:0003985: acetyl-CoA C-acetyltransferase activity	3.47E-04
16	GO:0004853: uroporphyrinogen decarboxylase activity	3.47E-04
17	GO:0042586: peptide deformylase activity	3.47E-04
18	GO:0004134: 4-alpha-glucanotransferase activity	3.47E-04
19	GO:0004645: phosphorylase activity	3.47E-04
20	GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity	3.47E-04
21	GO:0016868: intramolecular transferase activity, phosphotransferases	7.56E-04
22	GO:0010297: heteropolysaccharide binding	7.56E-04
23	GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity	7.56E-04
24	GO:0047158: sinapoylglucose-sinapoylglucose O-sinapoyltransferase activity	7.56E-04
25	GO:0018708: thiol S-methyltransferase activity	7.56E-04
26	GO:0003844: 1,4-alpha-glucan branching enzyme activity	7.56E-04
27	GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase	7.56E-04
28	GO:0044183: protein binding involved in protein folding	8.76E-04
29	GO:0043169: cation binding	1.22E-03
30	GO:0017150: tRNA dihydrouridine synthase activity	1.22E-03
31	GO:0090729: toxin activity	1.22E-03
32	GO:0015203: polyamine transmembrane transporter activity	1.76E-03
33	GO:0016851: magnesium chelatase activity	1.76E-03
34	GO:0016149: translation release factor activity, codon specific	1.76E-03
35	GO:0043023: ribosomal large subunit binding	1.76E-03
36	GO:0043621: protein self-association	2.35E-03
37	GO:0004506: squalene monooxygenase activity	2.37E-03
38	GO:0019199: transmembrane receptor protein kinase activity	2.37E-03
39	GO:0042277: peptide binding	2.37E-03
40	GO:2001070: starch binding	3.74E-03
41	GO:0004332: fructose-bisphosphate aldolase activity	3.74E-03
42	GO:0048038: quinone binding	4.31E-03
43	GO:0033743: peptide-methionine (R)-S-oxide reductase activity	4.50E-03
44	GO:0005261: cation channel activity	4.50E-03
45	GO:0004602: glutathione peroxidase activity	4.50E-03
46	GO:0005337: nucleoside transmembrane transporter activity	6.17E-03
47	GO:0004033: aldo-keto reductase (NADP) activity	6.17E-03
48	GO:0008173: RNA methyltransferase activity	7.08E-03
49	GO:0003747: translation release factor activity	8.04E-03
50	GO:0015174: basic amino acid transmembrane transporter activity	9.03E-03
51	GO:0009055: electron carrier activity	1.10E-02
52	GO:0047372: acylglycerol lipase activity	1.12E-02
53	GO:0003691: double-stranded telomeric DNA binding	1.12E-02
54	GO:0008378: galactosyltransferase activity	1.23E-02
55	GO:0004521: endoribonuclease activity	1.23E-02
56	GO:0000976: transcription regulatory region sequence-specific DNA binding	1.23E-02
57	GO:0004565: beta-galactosidase activity	1.34E-02
58	GO:0008083: growth factor activity	1.46E-02
59	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	1.56E-02
60	GO:0004190: aspartic-type endopeptidase activity	1.59E-02
61	GO:0000287: magnesium ion binding	1.66E-02
62	GO:0005528: FK506 binding	1.85E-02
63	GO:0008408: 3'-5' exonuclease activity	2.12E-02
64	GO:0033612: receptor serine/threonine kinase binding	2.12E-02
65	GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups	2.21E-02
66	GO:0022891: substrate-specific transmembrane transporter activity	2.40E-02
67	GO:0008810: cellulase activity	2.40E-02
68	GO:0005355: glucose transmembrane transporter activity	3.17E-02
69	GO:0016787: hydrolase activity	3.39E-02
70	GO:0016829: lyase activity	3.48E-02
71	GO:0030170: pyridoxal phosphate binding	3.57E-02
72	GO:0000156: phosphorelay response regulator activity	3.84E-02
73	GO:0008483: transaminase activity	4.19E-02
74	GO:0004702: signal transducer, downstream of receptor, with serine/threonine kinase activity	4.19E-02
75	GO:0005200: structural constituent of cytoskeleton	4.19E-02
76	GO:0016413: O-acetyltransferase activity	4.36E-02
77	GO:0016597: amino acid binding	4.36E-02
78	GO:0015250: water channel activity	4.55E-02

Rank	GO Term	Adjusted P value
1	GO:0017133: mitochondrial electron transfer flavoprotein complex	0.00E+00
2	GO:0005943: phosphatidylinositol 3-kinase complex, class IA	0.00E+00
3	GO:0009507: chloroplast	5.26E-17
4	GO:0009534: chloroplast thylakoid	1.00E-09
5	GO:0009570: chloroplast stroma	5.87E-09
6	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	3.69E-07
7	GO:0009535: chloroplast thylakoid membrane	5.28E-07
8	GO:0009543: chloroplast thylakoid lumen	2.63E-05
9	GO:0030095: chloroplast photosystem II	9.14E-05
10	GO:0009654: photosystem II oxygen evolving complex	1.73E-04
11	GO:0000791: euchromatin	3.47E-04
12	GO:0005787: signal peptidase complex	3.47E-04
13	GO:0019898: extrinsic component of membrane	4.70E-04
14	GO:0009295: nucleoid	7.07E-04
15	GO:0000427: plastid-encoded plastid RNA polymerase complex	7.56E-04
16	GO:0030870: Mre11 complex	7.56E-04
17	GO:0009508: plastid chromosome	1.13E-03
18	GO:0010007: magnesium chelatase complex	1.22E-03
19	GO:0031977: thylakoid lumen	1.91E-03
20	GO:0009579: thylakoid	2.82E-03
21	GO:0000795: synaptonemal complex	3.03E-03
22	GO:0009941: chloroplast envelope	5.60E-03
23	GO:0009501: amyloplast	6.17E-03
24	GO:0031305: integral component of mitochondrial inner membrane	6.17E-03
25	GO:0000783: nuclear telomere cap complex	7.08E-03
26	GO:0045298: tubulin complex	8.04E-03
27	GO:0005740: mitochondrial envelope	1.01E-02
28	GO:0042651: thylakoid membrane	1.98E-02
29	GO:0009706: chloroplast inner membrane	2.57E-02
30	GO:0010287: plastoglobule	3.05E-02
31	GO:0009536: plastid	3.30E-02
32	GO:0000785: chromatin	3.67E-02