GO Enrichment Analysis of Co-expressed Genes with
AT4G25050
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:1903428: positive regulation of reactive oxygen species biosynthetic process | 0.00E+00 |
| 2 | GO:0070125: mitochondrial translational elongation | 0.00E+00 |
| 3 | GO:1901401: regulation of tetrapyrrole metabolic process | 0.00E+00 |
| 4 | GO:0061635: regulation of protein complex stability | 0.00E+00 |
| 5 | GO:0005996: monosaccharide metabolic process | 0.00E+00 |
| 6 | GO:0015882: L-ascorbic acid transport | 0.00E+00 |
| 7 | GO:0015979: photosynthesis | 2.11E-23 |
| 8 | GO:0009768: photosynthesis, light harvesting in photosystem I | 1.12E-18 |
| 9 | GO:0018298: protein-chromophore linkage | 1.95E-17 |
| 10 | GO:0010207: photosystem II assembly | 3.78E-10 |
| 11 | GO:0009645: response to low light intensity stimulus | 1.21E-09 |
| 12 | GO:0010196: nonphotochemical quenching | 1.21E-09 |
| 13 | GO:0009769: photosynthesis, light harvesting in photosystem II | 1.21E-09 |
| 14 | GO:0090391: granum assembly | 1.63E-09 |
| 15 | GO:0010218: response to far red light | 1.99E-09 |
| 16 | GO:0010114: response to red light | 7.27E-09 |
| 17 | GO:0009644: response to high light intensity | 9.39E-09 |
| 18 | GO:0015995: chlorophyll biosynthetic process | 6.49E-08 |
| 19 | GO:0009637: response to blue light | 1.67E-07 |
| 20 | GO:0009642: response to light intensity | 4.83E-07 |
| 21 | GO:0010206: photosystem II repair | 1.02E-06 |
| 22 | GO:0006094: gluconeogenesis | 4.03E-06 |
| 23 | GO:0019253: reductive pentose-phosphate cycle | 5.01E-06 |
| 24 | GO:0009269: response to desiccation | 1.25E-05 |
| 25 | GO:0009735: response to cytokinin | 2.91E-05 |
| 26 | GO:0006096: glycolytic process | 2.95E-05 |
| 27 | GO:0010189: vitamin E biosynthetic process | 3.05E-05 |
| 28 | GO:0032544: plastid translation | 6.86E-05 |
| 29 | GO:0010027: thylakoid membrane organization | 7.16E-05 |
| 30 | GO:0090333: regulation of stomatal closure | 8.49E-05 |
| 31 | GO:0006098: pentose-phosphate shunt | 8.49E-05 |
| 32 | GO:0010028: xanthophyll cycle | 9.69E-05 |
| 33 | GO:0051775: response to redox state | 9.69E-05 |
| 34 | GO:0071277: cellular response to calcium ion | 9.69E-05 |
| 35 | GO:0019684: photosynthesis, light reaction | 1.44E-04 |
| 36 | GO:0043085: positive regulation of catalytic activity | 1.44E-04 |
| 37 | GO:0018119: peptidyl-cysteine S-nitrosylation | 1.44E-04 |
| 38 | GO:0034599: cellular response to oxidative stress | 1.60E-04 |
| 39 | GO:0006006: glucose metabolic process | 1.93E-04 |
| 40 | GO:0035304: regulation of protein dephosphorylation | 2.28E-04 |
| 41 | GO:0010042: response to manganese ion | 2.28E-04 |
| 42 | GO:0006729: tetrahydrobiopterin biosynthetic process | 2.28E-04 |
| 43 | GO:0030388: fructose 1,6-bisphosphate metabolic process | 2.28E-04 |
| 44 | GO:0009658: chloroplast organization | 2.46E-04 |
| 45 | GO:0071492: cellular response to UV-A | 3.80E-04 |
| 46 | GO:0006000: fructose metabolic process | 3.80E-04 |
| 47 | GO:0009409: response to cold | 3.89E-04 |
| 48 | GO:0080158: chloroplast ribulose bisphosphate carboxylase complex biogenesis | 5.46E-04 |
| 49 | GO:0071484: cellular response to light intensity | 5.46E-04 |
| 50 | GO:0006107: oxaloacetate metabolic process | 5.46E-04 |
| 51 | GO:0042989: sequestering of actin monomers | 5.46E-04 |
| 52 | GO:0042823: pyridoxal phosphate biosynthetic process | 5.46E-04 |
| 53 | GO:0006662: glycerol ether metabolic process | 6.09E-04 |
| 54 | GO:0030104: water homeostasis | 7.26E-04 |
| 55 | GO:0006734: NADH metabolic process | 7.26E-04 |
| 56 | GO:0071486: cellular response to high light intensity | 7.26E-04 |
| 57 | GO:0009765: photosynthesis, light harvesting | 7.26E-04 |
| 58 | GO:0006109: regulation of carbohydrate metabolic process | 7.26E-04 |
| 59 | GO:0045727: positive regulation of translation | 7.26E-04 |
| 60 | GO:0015994: chlorophyll metabolic process | 7.26E-04 |
| 61 | GO:0030041: actin filament polymerization | 9.17E-04 |
| 62 | GO:0010236: plastoquinone biosynthetic process | 9.17E-04 |
| 63 | GO:0042742: defense response to bacterium | 9.89E-04 |
| 64 | GO:0009635: response to herbicide | 1.12E-03 |
| 65 | GO:0050665: hydrogen peroxide biosynthetic process | 1.12E-03 |
| 66 | GO:0042549: photosystem II stabilization | 1.12E-03 |
| 67 | GO:0009854: oxidative photosynthetic carbon pathway | 1.34E-03 |
| 68 | GO:0071470: cellular response to osmotic stress | 1.34E-03 |
| 69 | GO:0009416: response to light stimulus | 1.50E-03 |
| 70 | GO:0030026: cellular manganese ion homeostasis | 1.57E-03 |
| 71 | GO:0051510: regulation of unidimensional cell growth | 1.57E-03 |
| 72 | GO:0009704: de-etiolation | 1.81E-03 |
| 73 | GO:0048564: photosystem I assembly | 1.81E-03 |
| 74 | GO:0006002: fructose 6-phosphate metabolic process | 2.07E-03 |
| 75 | GO:0071482: cellular response to light stimulus | 2.07E-03 |
| 76 | GO:0098656: anion transmembrane transport | 2.33E-03 |
| 77 | GO:0010205: photoinhibition | 2.61E-03 |
| 78 | GO:0000272: polysaccharide catabolic process | 3.20E-03 |
| 79 | GO:0009773: photosynthetic electron transport in photosystem I | 3.20E-03 |
| 80 | GO:0006108: malate metabolic process | 3.82E-03 |
| 81 | GO:0005986: sucrose biosynthetic process | 3.82E-03 |
| 82 | GO:0046688: response to copper ion | 4.49E-03 |
| 83 | GO:0090351: seedling development | 4.49E-03 |
| 84 | GO:0007010: cytoskeleton organization | 5.19E-03 |
| 85 | GO:0009845: seed germination | 5.68E-03 |
| 86 | GO:0061077: chaperone-mediated protein folding | 5.93E-03 |
| 87 | GO:0071215: cellular response to abscisic acid stimulus | 6.70E-03 |
| 88 | GO:0009561: megagametogenesis | 7.10E-03 |
| 89 | GO:0007623: circadian rhythm | 7.24E-03 |
| 90 | GO:0042631: cellular response to water deprivation | 7.93E-03 |
| 91 | GO:0046686: response to cadmium ion | 8.57E-03 |
| 92 | GO:0019252: starch biosynthetic process | 9.23E-03 |
| 93 | GO:0009791: post-embryonic development | 9.23E-03 |
| 94 | GO:0071554: cell wall organization or biogenesis | 9.68E-03 |
| 95 | GO:0006414: translational elongation | 1.27E-02 |
| 96 | GO:0080167: response to karrikin | 1.39E-02 |
| 97 | GO:0016311: dephosphorylation | 1.46E-02 |
| 98 | GO:0045454: cell redox homeostasis | 1.67E-02 |
| 99 | GO:0048527: lateral root development | 1.68E-02 |
| 100 | GO:0010119: regulation of stomatal movement | 1.68E-02 |
| 101 | GO:0016051: carbohydrate biosynthetic process | 1.79E-02 |
| 102 | GO:0006099: tricarboxylic acid cycle | 1.85E-02 |
| 103 | GO:0030001: metal ion transport | 1.96E-02 |
| 104 | GO:0032259: methylation | 1.97E-02 |
| 105 | GO:0009744: response to sucrose | 2.14E-02 |
| 106 | GO:0006812: cation transport | 2.52E-02 |
| 107 | GO:0006364: rRNA processing | 2.65E-02 |
| 108 | GO:0043086: negative regulation of catalytic activity | 2.99E-02 |
| 109 | GO:0055114: oxidation-reduction process | 3.22E-02 |
| 110 | GO:0009611: response to wounding | 3.73E-02 |
| 111 | GO:0045893: positive regulation of transcription, DNA-templated | 4.19E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0045550: geranylgeranyl reductase activity | 0.00E+00 |
| 2 | GO:0102550: 2-methyl-6-geranylgeranyl-1,4-benzoquinol methyltransferase activity | 0.00E+00 |
| 3 | GO:0050278: sedoheptulose-bisphosphatase activity | 0.00E+00 |
| 4 | GO:0015229: L-ascorbic acid transporter activity | 0.00E+00 |
| 5 | GO:0010486: manganese:proton antiporter activity | 0.00E+00 |
| 6 | GO:0046408: chlorophyll synthetase activity | 0.00E+00 |
| 7 | GO:0048529: magnesium-protoporphyrin IX monomethyl ester (oxidative) cyclase activity | 0.00E+00 |
| 8 | GO:0046406: magnesium protoporphyrin IX methyltransferase activity | 0.00E+00 |
| 9 | GO:0046554: malate dehydrogenase (NADP+) activity | 0.00E+00 |
| 10 | GO:0016730: oxidoreductase activity, acting on iron-sulfur proteins as donors | 0.00E+00 |
| 11 | GO:0031409: pigment binding | 3.46E-19 |
| 12 | GO:0016168: chlorophyll binding | 5.94E-18 |
| 13 | GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity | 4.96E-07 |
| 14 | GO:0004332: fructose-bisphosphate aldolase activity | 2.15E-05 |
| 15 | GO:0008746: NAD(P)+ transhydrogenase activity | 9.69E-05 |
| 16 | GO:0051741: 2-methyl-6-phytyl-1,4-benzoquinone methyltransferase activity | 9.69E-05 |
| 17 | GO:0008886: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (non-phosphorylating) activity | 9.69E-05 |
| 18 | GO:0010242: oxygen evolving activity | 9.69E-05 |
| 19 | GO:0008124: 4-alpha-hydroxytetrahydrobiopterin dehydratase activity | 9.69E-05 |
| 20 | GO:0008047: enzyme activator activity | 1.23E-04 |
| 21 | GO:0003746: translation elongation factor activity | 1.50E-04 |
| 22 | GO:0005509: calcium ion binding | 1.69E-04 |
| 23 | GO:0031072: heat shock protein binding | 1.93E-04 |
| 24 | GO:0008266: poly(U) RNA binding | 2.19E-04 |
| 25 | GO:0047746: chlorophyllase activity | 2.28E-04 |
| 26 | GO:0010297: heteropolysaccharide binding | 2.28E-04 |
| 27 | GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity | 2.28E-04 |
| 28 | GO:0046872: metal ion binding | 2.39E-04 |
| 29 | GO:0005528: FK506 binding | 3.08E-04 |
| 30 | GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor | 3.80E-04 |
| 31 | GO:0003913: DNA photolyase activity | 3.80E-04 |
| 32 | GO:0047134: protein-disulfide reductase activity | 5.25E-04 |
| 33 | GO:0052852: very-long-chain-(S)-2-hydroxy-acid oxidase activity | 5.46E-04 |
| 34 | GO:0004365: glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity | 5.46E-04 |
| 35 | GO:0052853: long-chain-(S)-2-hydroxy-long-chain-acid oxidase activity | 5.46E-04 |
| 36 | GO:0052854: medium-chain-(S)-2-hydroxy-acid oxidase activity | 5.46E-04 |
| 37 | GO:0016628: oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor | 5.46E-04 |
| 38 | GO:0016851: magnesium chelatase activity | 5.46E-04 |
| 39 | GO:0004791: thioredoxin-disulfide reductase activity | 6.54E-04 |
| 40 | GO:0019843: rRNA binding | 6.69E-04 |
| 41 | GO:0008891: glycolate oxidase activity | 7.26E-04 |
| 42 | GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor | 8.45E-04 |
| 43 | GO:0003785: actin monomer binding | 9.17E-04 |
| 44 | GO:0016615: malate dehydrogenase activity | 1.12E-03 |
| 45 | GO:0042578: phosphoric ester hydrolase activity | 1.12E-03 |
| 46 | GO:0030060: L-malate dehydrogenase activity | 1.34E-03 |
| 47 | GO:0009881: photoreceptor activity | 1.57E-03 |
| 48 | GO:0050661: NADP binding | 1.96E-03 |
| 49 | GO:0008135: translation factor activity, RNA binding | 2.07E-03 |
| 50 | GO:0003755: peptidyl-prolyl cis-trans isomerase activity | 2.57E-03 |
| 51 | GO:0004028: 3-chloroallyl aldehyde dehydrogenase activity | 2.61E-03 |
| 52 | GO:0005384: manganese ion transmembrane transporter activity | 2.61E-03 |
| 53 | GO:0051287: NAD binding | 2.67E-03 |
| 54 | GO:0005315: inorganic phosphate transmembrane transporter activity | 3.82E-03 |
| 55 | GO:0051082: unfolded protein binding | 4.20E-03 |
| 56 | GO:0015035: protein disulfide oxidoreductase activity | 4.33E-03 |
| 57 | GO:0003954: NADH dehydrogenase activity | 5.19E-03 |
| 58 | GO:0004857: enzyme inhibitor activity | 5.19E-03 |
| 59 | GO:0008324: cation transmembrane transporter activity | 5.55E-03 |
| 60 | GO:0022891: substrate-specific transmembrane transporter activity | 6.70E-03 |
| 61 | GO:0003756: protein disulfide isomerase activity | 7.10E-03 |
| 62 | GO:0008514: organic anion transmembrane transporter activity | 7.10E-03 |
| 63 | GO:0050662: coenzyme binding | 8.79E-03 |
| 64 | GO:0016853: isomerase activity | 8.79E-03 |
| 65 | GO:0010181: FMN binding | 8.79E-03 |
| 66 | GO:0005515: protein binding | 1.13E-02 |
| 67 | GO:0016413: O-acetyltransferase activity | 1.20E-02 |
| 68 | GO:0003735: structural constituent of ribosome | 1.24E-02 |
| 69 | GO:0008757: S-adenosylmethionine-dependent methyltransferase activity | 1.46E-02 |
| 70 | GO:0003993: acid phosphatase activity | 1.85E-02 |
| 71 | GO:0005198: structural molecule activity | 2.33E-02 |
| 72 | GO:0016874: ligase activity | 3.26E-02 |
| 73 | GO:0003779: actin binding | 3.33E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0009515: granal stacked thylakoid | 0.00E+00 |
| 2 | GO:0009783: photosystem II antenna complex | 0.00E+00 |
| 3 | GO:0009507: chloroplast | 5.83E-51 |
| 4 | GO:0009535: chloroplast thylakoid membrane | 1.19E-47 |
| 5 | GO:0009579: thylakoid | 2.01E-44 |
| 6 | GO:0009534: chloroplast thylakoid | 2.35E-44 |
| 7 | GO:0009941: chloroplast envelope | 7.62E-31 |
| 8 | GO:0009570: chloroplast stroma | 5.81E-22 |
| 9 | GO:0010287: plastoglobule | 7.93E-22 |
| 10 | GO:0009543: chloroplast thylakoid lumen | 7.55E-18 |
| 11 | GO:0031977: thylakoid lumen | 1.88E-16 |
| 12 | GO:0009522: photosystem I | 6.77E-15 |
| 13 | GO:0030076: light-harvesting complex | 1.53E-14 |
| 14 | GO:0030095: chloroplast photosystem II | 2.10E-12 |
| 15 | GO:0009654: photosystem II oxygen evolving complex | 1.00E-11 |
| 16 | GO:0009517: PSII associated light-harvesting complex II | 2.99E-11 |
| 17 | GO:0009523: photosystem II | 1.33E-10 |
| 18 | GO:0019898: extrinsic component of membrane | 1.33E-10 |
| 19 | GO:0048046: apoplast | 7.69E-07 |
| 20 | GO:0009706: chloroplast inner membrane | 4.23E-05 |
| 21 | GO:0009782: photosystem I antenna complex | 9.69E-05 |
| 22 | GO:0005840: ribosome | 2.25E-04 |
| 23 | GO:0000427: plastid-encoded plastid RNA polymerase complex | 2.28E-04 |
| 24 | GO:0031304: intrinsic component of mitochondrial inner membrane | 2.28E-04 |
| 25 | GO:0042651: thylakoid membrane | 3.41E-04 |
| 26 | GO:0031969: chloroplast membrane | 3.48E-04 |
| 27 | GO:0010007: magnesium chelatase complex | 3.80E-04 |
| 28 | GO:0016020: membrane | 3.82E-04 |
| 29 | GO:0016021: integral component of membrane | 4.07E-04 |
| 30 | GO:0055035: plastid thylakoid membrane | 9.17E-04 |
| 31 | GO:0010319: stromule | 9.50E-04 |
| 32 | GO:0015934: large ribosomal subunit | 1.57E-03 |
| 33 | GO:0009533: chloroplast stromal thylakoid | 1.57E-03 |
| 34 | GO:0009538: photosystem I reaction center | 1.81E-03 |
| 35 | GO:0009508: plastid chromosome | 3.82E-03 |
| 36 | GO:0005938: cell cortex | 3.82E-03 |
| 37 | GO:0005623: cell | 5.39E-03 |
| 38 | GO:0015629: actin cytoskeleton | 6.70E-03 |
| 39 | GO:0022626: cytosolic ribosome | 7.20E-03 |
| 40 | GO:0005770: late endosome | 8.35E-03 |
| 41 | GO:0005777: peroxisome | 9.07E-03 |
| 42 | GO:0009295: nucleoid | 1.16E-02 |
| 43 | GO:0031902: late endosome membrane | 2.02E-02 |
| 44 | GO:0005759: mitochondrial matrix | 4.70E-02 |