Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT4G24960

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0071629: ubiquitin-dependent catabolism of misfolded proteins by cytoplasm-associated proteasome0.00E+00
2GO:0032953: regulation of (1->3)-beta-D-glucan biosynthetic process0.00E+00
3GO:0006203: dGTP catabolic process0.00E+00
4GO:0050708: regulation of protein secretion0.00E+00
5GO:0009873: ethylene-activated signaling pathway1.57E-06
6GO:0009695: jasmonic acid biosynthetic process3.56E-06
7GO:0006598: polyamine catabolic process1.21E-05
8GO:0015700: arsenite transport2.72E-05
9GO:0009611: response to wounding4.46E-05
10GO:0031408: oxylipin biosynthetic process1.17E-04
11GO:0007205: protein kinase C-activating G-protein coupled receptor signaling pathway2.04E-04
12GO:0009415: response to water2.58E-04
13GO:0030974: thiamine pyrophosphate transport2.70E-04
14GO:0050691: regulation of defense response to virus by host2.70E-04
15GO:0006680: glucosylceramide catabolic process2.70E-04
16GO:0046208: spermine catabolic process2.70E-04
17GO:0046938: phytochelatin biosynthetic process2.70E-04
18GO:0051180: vitamin transport2.70E-04
19GO:0046685: response to arsenic-containing substance3.84E-04
20GO:0015786: UDP-glucose transport5.94E-04
21GO:0031407: oxylipin metabolic process5.94E-04
22GO:0010289: homogalacturonan biosynthetic process5.94E-04
23GO:0006898: receptor-mediated endocytosis5.94E-04
24GO:0015893: drug transport5.94E-04
25GO:0052544: defense response by callose deposition in cell wall6.14E-04
26GO:0010200: response to chitin7.10E-04
27GO:0018107: peptidyl-threonine phosphorylation7.96E-04
28GO:0006811: ion transport8.15E-04
29GO:0016045: detection of bacterium9.62E-04
30GO:0010359: regulation of anion channel activity9.62E-04
31GO:0010288: response to lead ion9.62E-04
32GO:0009961: response to 1-aminocyclopropane-1-carboxylic acid9.62E-04
33GO:0015783: GDP-fucose transport9.62E-04
34GO:0046786: viral replication complex formation and maintenance9.62E-04
35GO:0042344: indole glucosinolate catabolic process9.62E-04
36GO:0010371: regulation of gibberellin biosynthetic process1.38E-03
37GO:0072334: UDP-galactose transmembrane transport1.38E-03
38GO:0080170: hydrogen peroxide transmembrane transport1.38E-03
39GO:0006470: protein dephosphorylation1.41E-03
40GO:0045088: regulation of innate immune response1.84E-03
41GO:0022622: root system development1.84E-03
42GO:0006221: pyrimidine nucleotide biosynthetic process1.84E-03
43GO:0034440: lipid oxidation1.84E-03
44GO:0042147: retrograde transport, endosome to Golgi2.08E-03
45GO:0006873: cellular ion homeostasis2.35E-03
46GO:0006665: sphingolipid metabolic process2.35E-03
47GO:0032957: inositol trisphosphate metabolic process2.35E-03
48GO:0009247: glycolipid biosynthetic process2.35E-03
49GO:0070897: DNA-templated transcriptional preinitiation complex assembly2.35E-03
50GO:0045487: gibberellin catabolic process2.35E-03
51GO:0006970: response to osmotic stress2.50E-03
52GO:1900425: negative regulation of defense response to bacterium2.90E-03
53GO:0006751: glutathione catabolic process2.90E-03
54GO:0006891: intra-Golgi vesicle-mediated transport2.98E-03
55GO:0010193: response to ozone2.98E-03
56GO:0009624: response to nematode3.03E-03
57GO:1901657: glycosyl compound metabolic process3.39E-03
58GO:0048280: vesicle fusion with Golgi apparatus3.49E-03
59GO:0080086: stamen filament development3.49E-03
60GO:0019760: glucosinolate metabolic process3.61E-03
61GO:0032880: regulation of protein localization4.12E-03
62GO:0009864: induced systemic resistance, jasmonic acid mediated signaling pathway4.12E-03
63GO:0010161: red light signaling pathway4.12E-03
64GO:0006955: immune response4.12E-03
65GO:0006207: 'de novo' pyrimidine nucleobase biosynthetic process4.12E-03
66GO:0010029: regulation of seed germination4.55E-03
67GO:0019375: galactolipid biosynthetic process4.77E-03
68GO:0007155: cell adhesion4.77E-03
69GO:0009751: response to salicylic acid5.49E-03
70GO:0009737: response to abscisic acid5.90E-03
71GO:0098656: anion transmembrane transport6.20E-03
72GO:0009631: cold acclimation6.49E-03
73GO:0007346: regulation of mitotic cell cycle6.96E-03
74GO:0010468: regulation of gene expression7.61E-03
75GO:0006468: protein phosphorylation7.70E-03
76GO:0006535: cysteine biosynthetic process from serine7.75E-03
77GO:0009641: shade avoidance7.75E-03
78GO:0006896: Golgi to vacuole transport7.75E-03
79GO:0018119: peptidyl-cysteine S-nitrosylation8.58E-03
80GO:0051707: response to other organism9.18E-03
81GO:0010105: negative regulation of ethylene-activated signaling pathway9.44E-03
82GO:0006890: retrograde vesicle-mediated transport, Golgi to ER9.44E-03
83GO:0000266: mitochondrial fission9.44E-03
84GO:0030048: actin filament-based movement1.03E-02
85GO:0050826: response to freezing1.03E-02
86GO:2000012: regulation of auxin polar transport1.03E-02
87GO:0002237: response to molecule of bacterial origin1.12E-02
88GO:0009414: response to water deprivation1.19E-02
89GO:0071732: cellular response to nitric oxide1.22E-02
90GO:0070588: calcium ion transmembrane transport1.22E-02
91GO:0009901: anther dehiscence1.22E-02
92GO:0009833: plant-type primary cell wall biogenesis1.32E-02
93GO:0019344: cysteine biosynthetic process1.42E-02
94GO:0035556: intracellular signal transduction1.45E-02
95GO:0006351: transcription, DNA-templated1.45E-02
96GO:0051321: meiotic cell cycle1.62E-02
97GO:0009620: response to fungus1.62E-02
98GO:0009269: response to desiccation1.62E-02
99GO:0080092: regulation of pollen tube growth1.73E-02
100GO:0030245: cellulose catabolic process1.73E-02
101GO:0045892: negative regulation of transcription, DNA-templated1.79E-02
102GO:0018105: peptidyl-serine phosphorylation1.82E-02
103GO:0071369: cellular response to ethylene stimulus1.84E-02
104GO:0040007: growth1.84E-02
105GO:0001944: vasculature development1.84E-02
106GO:0009686: gibberellin biosynthetic process1.84E-02
107GO:0006952: defense response1.88E-02
108GO:0010584: pollen exine formation1.95E-02
109GO:0048443: stamen development1.95E-02
110GO:0000398: mRNA splicing, via spliceosome2.04E-02
111GO:0008284: positive regulation of cell proliferation2.07E-02
112GO:0006355: regulation of transcription, DNA-templated2.19E-02
113GO:0048653: anther development2.19E-02
114GO:0042631: cellular response to water deprivation2.19E-02
115GO:0009960: endosperm development2.31E-02
116GO:0045489: pectin biosynthetic process2.31E-02
117GO:0009958: positive gravitropism2.31E-02
118GO:0006814: sodium ion transport2.43E-02
119GO:0009749: response to glucose2.55E-02
120GO:0006623: protein targeting to vacuole2.55E-02
121GO:0010183: pollen tube guidance2.55E-02
122GO:0009790: embryo development2.59E-02
123GO:0048510: regulation of timing of transition from vegetative to reproductive phase2.68E-02
124GO:0071281: cellular response to iron ion2.94E-02
125GO:0045490: pectin catabolic process3.06E-02
126GO:0009639: response to red or far red light3.07E-02
127GO:0050832: defense response to fungus3.10E-02
128GO:0010286: heat acclimation3.21E-02
129GO:0010027: thylakoid membrane organization3.48E-02
130GO:0009788: negative regulation of abscisic acid-activated signaling pathway3.63E-02
131GO:0009617: response to bacterium3.65E-02
132GO:0006974: cellular response to DNA damage stimulus3.77E-02
133GO:0006950: response to stress3.91E-02
134GO:0006888: ER to Golgi vesicle-mediated transport3.91E-02
135GO:0016049: cell growth4.06E-02
136GO:0048767: root hair elongation4.36E-02
137GO:0048527: lateral root development4.66E-02
138GO:0006865: amino acid transport4.82E-02
139GO:0045087: innate immune response4.97E-02
140GO:0016051: carbohydrate biosynthetic process4.97E-02
RankGO TermAdjusted P value
1GO:0008413: 8-oxo-7,8-dihydroguanosine triphosphate pyrophosphatase activity0.00E+00
2GO:0052904: N1-acetylspermidine:oxygen oxidoreductase (3-acetamidopropanal-forming) activity0.00E+00
3GO:0019177: dihydroneopterin triphosphate pyrophosphohydrolase activity0.00E+00
4GO:0035539: 8-oxo-7,8-dihydrodeoxyguanosine triphosphate pyrophosphatase activity0.00E+00
5GO:0046790: virion binding0.00E+00
6GO:0052903: N1-acetylspermine:oxygen oxidoreductase (3-acetamidopropanal-forming) activity0.00E+00
7GO:0052902: spermidine:oxygen oxidoreductase (3-aminopropanal-forming) activity0.00E+00
8GO:0008419: RNA lariat debranching enzyme activity0.00E+00
9GO:0016629: 12-oxophytodienoate reductase activity3.35E-06
10GO:0052901: spermine:oxygen oxidoreductase (spermidine-forming) activity3.35E-06
11GO:0046423: allene-oxide cyclase activity1.21E-05
12GO:0046592: polyamine oxidase activity1.21E-05
13GO:0004143: diacylglycerol kinase activity2.04E-04
14GO:0004348: glucosylceramidase activity2.70E-04
15GO:0071992: phytochelatin transmembrane transporter activity2.70E-04
16GO:0052894: norspermine:oxygen oxidoreductase activity2.70E-04
17GO:0090422: thiamine pyrophosphate transporter activity2.70E-04
18GO:0046870: cadmium ion binding2.70E-04
19GO:0015446: ATPase-coupled arsenite transmembrane transporter activity2.70E-04
20GO:0052895: N1-acetylspermine:oxygen oxidoreductase (N1-acetylspermidine-forming) activity2.70E-04
21GO:0043565: sequence-specific DNA binding3.57E-04
22GO:0004702: signal transducer, downstream of receptor, with serine/threonine kinase activity4.43E-04
23GO:0004103: choline kinase activity5.94E-04
24GO:0017040: ceramidase activity5.94E-04
25GO:0003839: gamma-glutamylcyclotransferase activity5.94E-04
26GO:0015105: arsenite transmembrane transporter activity5.94E-04
27GO:0046509: 1,2-diacylglycerol 3-beta-galactosyltransferase activity5.94E-04
28GO:0004127: cytidylate kinase activity5.94E-04
29GO:0008083: growth factor activity8.95E-04
30GO:0004383: guanylate cyclase activity9.62E-04
31GO:0016165: linoleate 13S-lipoxygenase activity9.62E-04
32GO:0005457: GDP-fucose transmembrane transporter activity9.62E-04
33GO:0047325: inositol tetrakisphosphate 1-kinase activity9.62E-04
34GO:0052726: inositol-1,3,4-trisphosphate 5-kinase activity9.62E-04
35GO:0015297: antiporter activity1.07E-03
36GO:0004722: protein serine/threonine phosphatase activity1.08E-03
37GO:0044212: transcription regulatory region DNA binding1.13E-03
38GO:0035250: UDP-galactosyltransferase activity1.38E-03
39GO:0003883: CTP synthase activity1.38E-03
40GO:0005460: UDP-glucose transmembrane transporter activity1.38E-03
41GO:0052725: inositol-1,3,4-trisphosphate 6-kinase activity1.38E-03
42GO:0009001: serine O-acetyltransferase activity1.38E-03
43GO:0019201: nucleotide kinase activity1.38E-03
44GO:0052634: C-19 gibberellin 2-beta-dioxygenase activity1.38E-03
45GO:0001653: peptide receptor activity1.38E-03
46GO:0016756: glutathione gamma-glutamylcysteinyltransferase activity1.38E-03
47GO:0009041: uridylate kinase activity1.38E-03
48GO:0005432: calcium:sodium antiporter activity1.38E-03
49GO:0004659: prenyltransferase activity1.84E-03
50GO:0070696: transmembrane receptor protein serine/threonine kinase binding2.35E-03
51GO:0005459: UDP-galactose transmembrane transporter activity2.35E-03
52GO:0010181: FMN binding2.60E-03
53GO:0000210: NAD+ diphosphatase activity2.90E-03
54GO:0016301: kinase activity3.08E-03
55GO:0016621: cinnamoyl-CoA reductase activity4.12E-03
56GO:0015491: cation:cation antiporter activity4.77E-03
57GO:0004721: phosphoprotein phosphatase activity5.06E-03
58GO:0102483: scopolin beta-glucosidase activity5.06E-03
59GO:0003951: NAD+ kinase activity5.47E-03
60GO:0008308: voltage-gated anion channel activity5.47E-03
61GO:0004674: protein serine/threonine kinase activity5.80E-03
62GO:0003700: transcription factor activity, sequence-specific DNA binding7.15E-03
63GO:0004864: protein phosphatase inhibitor activity7.75E-03
64GO:0008422: beta-glucosidase activity7.77E-03
65GO:0005315: inorganic phosphate transmembrane transporter activity1.03E-02
66GO:0005262: calcium channel activity1.03E-02
67GO:0008131: primary amine oxidase activity1.12E-02
68GO:0042973: glucan endo-1,3-beta-D-glucosidase activity1.12E-02
69GO:0003774: motor activity1.12E-02
70GO:0017025: TBP-class protein binding1.22E-02
71GO:0004857: enzyme inhibitor activity1.42E-02
72GO:0051087: chaperone binding1.52E-02
73GO:0004707: MAP kinase activity1.62E-02
74GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity1.73E-02
75GO:0030570: pectate lyase activity1.84E-02
76GO:0008514: organic anion transmembrane transporter activity1.95E-02
77GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds2.03E-02
78GO:0046872: metal ion binding2.03E-02
79GO:0015144: carbohydrate transmembrane transporter activity2.66E-02
80GO:0004675: transmembrane receptor protein serine/threonine kinase activity2.85E-02
81GO:0005351: sugar:proton symporter activity2.99E-02
82GO:0016722: oxidoreductase activity, oxidizing metal ions3.21E-02
83GO:0015250: water channel activity3.48E-02
84GO:0005524: ATP binding3.55E-02
85GO:0008757: S-adenosylmethionine-dependent methyltransferase activity4.06E-02
86GO:0005096: GTPase activator activity4.36E-02
87GO:0015238: drug transmembrane transporter activity4.36E-02
88GO:0004693: cyclin-dependent protein serine/threonine kinase activity4.51E-02
RankGO TermAdjusted P value
1GO:0005801: cis-Golgi network3.49E-03
2GO:0012507: ER to Golgi transport vesicle membrane4.77E-03
3GO:0000139: Golgi membrane6.91E-03
4GO:0016604: nuclear body6.96E-03
5GO:0015629: actin cytoskeleton1.84E-02
6GO:0005737: cytoplasm3.09E-02
7GO:0005622: intracellular3.15E-02
8GO:0046658: anchored component of plasma membrane4.04E-02
<
Gene type



Gene DE type