co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT4G24090

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0090071: negative regulation of ribosome biogenesis	0.00E+00
2	GO:0007037: vacuolar phosphate transport	0.00E+00
3	GO:0031116: positive regulation of microtubule polymerization	0.00E+00
4	GO:0008298: intracellular mRNA localization	0.00E+00
5	GO:0010190: cytochrome b6f complex assembly	3.88E-07
6	GO:0048564: photosystem I assembly	1.72E-06
7	GO:0016123: xanthophyll biosynthetic process	3.35E-05
8	GO:0006605: protein targeting	1.20E-04
9	GO:1904966: positive regulation of vitamin E biosynthetic process	1.62E-04
10	GO:0071806: protein transmembrane transport	1.62E-04
11	GO:1904964: positive regulation of phytol biosynthetic process	1.62E-04
12	GO:0042371: vitamin K biosynthetic process	1.62E-04
13	GO:0010275: NAD(P)H dehydrogenase complex assembly	3.69E-04
14	GO:1902326: positive regulation of chlorophyll biosynthetic process	3.69E-04
15	GO:0034755: iron ion transmembrane transport	3.69E-04
16	GO:1905011: transmembrane phosphate ion transport from cytosol to vacuole	3.69E-04
17	GO:0080005: photosystem stoichiometry adjustment	3.69E-04
18	GO:0009767: photosynthetic electron transport chain	3.96E-04
19	GO:0090351: seedling development	5.00E-04
20	GO:0006013: mannose metabolic process	6.04E-04
21	GO:0051604: protein maturation	6.04E-04
22	GO:0001578: microtubule bundle formation	6.04E-04
23	GO:0009102: biotin biosynthetic process	8.63E-04
24	GO:0090307: mitotic spindle assembly	8.63E-04
25	GO:0051415: interphase microtubule nucleation by interphase microtubule organizing center	8.63E-04
26	GO:0033014: tetrapyrrole biosynthetic process	8.63E-04
27	GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly	8.63E-04
28	GO:0042274: ribosomal small subunit biogenesis	1.14E-03
29	GO:0051322: anaphase	1.14E-03
30	GO:0009765: photosynthesis, light harvesting	1.14E-03
31	GO:0007020: microtubule nucleation	1.14E-03
32	GO:0031122: cytoplasmic microtubule organization	1.14E-03
33	GO:0071483: cellular response to blue light	1.14E-03
34	GO:0016120: carotene biosynthetic process	1.45E-03
35	GO:0046785: microtubule polymerization	1.45E-03
36	GO:0032973: amino acid export	1.78E-03
37	GO:0006655: phosphatidylglycerol biosynthetic process	1.78E-03
38	GO:0009643: photosynthetic acclimation	1.78E-03
39	GO:0010027: thylakoid membrane organization	2.10E-03
40	GO:0015977: carbon fixation	2.14E-03
41	GO:0017148: negative regulation of translation	2.14E-03
42	GO:0010189: vitamin E biosynthetic process	2.14E-03
43	GO:0009451: RNA modification	2.49E-03
44	GO:0048528: post-embryonic root development	2.52E-03
45	GO:0009772: photosynthetic electron transport in photosystem II	2.52E-03
46	GO:0043090: amino acid import	2.52E-03
47	GO:1900056: negative regulation of leaf senescence	2.52E-03
48	GO:0042255: ribosome assembly	2.91E-03
49	GO:0006353: DNA-templated transcription, termination	2.91E-03
50	GO:0071482: cellular response to light stimulus	3.33E-03
51	GO:0006098: pentose-phosphate shunt	3.77E-03
52	GO:0080144: amino acid homeostasis	3.77E-03
53	GO:0006783: heme biosynthetic process	3.77E-03
54	GO:0009658: chloroplast organization	4.21E-03
55	GO:0006779: porphyrin-containing compound biosynthetic process	4.22E-03
56	GO:0010380: regulation of chlorophyll biosynthetic process	4.22E-03
57	GO:0009870: defense response signaling pathway, resistance gene-dependent	4.69E-03
58	GO:0045036: protein targeting to chloroplast	4.69E-03
59	GO:0009793: embryo development ending in seed dormancy	4.70E-03
60	GO:0009773: photosynthetic electron transport in photosystem I	5.19E-03
61	GO:1903507: negative regulation of nucleic acid-templated transcription	5.19E-03
62	GO:0006879: cellular iron ion homeostasis	5.19E-03
63	GO:0006352: DNA-templated transcription, initiation	5.19E-03
64	GO:0016024: CDP-diacylglycerol biosynthetic process	5.69E-03
65	GO:0045037: protein import into chloroplast stroma	5.69E-03
66	GO:0009725: response to hormone	6.22E-03
67	GO:0006094: gluconeogenesis	6.22E-03
68	GO:0015979: photosynthesis	6.55E-03
69	GO:0019253: reductive pentose-phosphate cycle	6.76E-03
70	GO:0010207: photosystem II assembly	6.76E-03
71	GO:0006863: purine nucleobase transport	7.90E-03
72	GO:0043622: cortical microtubule organization	9.09E-03
73	GO:0007017: microtubule-based process	9.09E-03
74	GO:0016226: iron-sulfur cluster assembly	1.04E-02
75	GO:2000022: regulation of jasmonic acid mediated signaling pathway	1.04E-02
76	GO:0080092: regulation of pollen tube growth	1.04E-02
77	GO:0009306: protein secretion	1.17E-02
78	GO:0016117: carotenoid biosynthetic process	1.24E-02
79	GO:0008033: tRNA processing	1.31E-02
80	GO:0048868: pollen tube development	1.38E-02
81	GO:0015986: ATP synthesis coupled proton transport	1.45E-02
82	GO:0007018: microtubule-based movement	1.45E-02
83	GO:0009791: post-embryonic development	1.52E-02
84	GO:0008654: phospholipid biosynthetic process	1.52E-02
85	GO:0010193: response to ozone	1.60E-02
86	GO:0016032: viral process	1.67E-02
87	GO:0032502: developmental process	1.67E-02
88	GO:0009555: pollen development	1.88E-02
89	GO:0000910: cytokinesis	1.99E-02
90	GO:0001666: response to hypoxia	2.07E-02
91	GO:0009816: defense response to bacterium, incompatible interaction	2.16E-02
92	GO:0009817: defense response to fungus, incompatible interaction	2.51E-02
93	GO:0018298: protein-chromophore linkage	2.51E-02
94	GO:0010218: response to far red light	2.69E-02
95	GO:0009910: negative regulation of flower development	2.78E-02
96	GO:0007568: aging	2.78E-02
97	GO:0080167: response to karrikin	2.84E-02
98	GO:0009853: photorespiration	2.97E-02
99	GO:0009637: response to blue light	2.97E-02
100	GO:0008283: cell proliferation	3.55E-02
101	GO:0010114: response to red light	3.55E-02
102	GO:0009744: response to sucrose	3.55E-02
103	GO:0031347: regulation of defense response	4.07E-02
104	GO:0009846: pollen germination	4.18E-02
105	GO:0010224: response to UV-B	4.50E-02
106	GO:0006096: glycolytic process	4.94E-02

Rank	GO Term	Adjusted P value
1	GO:0004076: biotin synthase activity	0.00E+00
2	GO:0045435: lycopene epsilon cyclase activity	0.00E+00
3	GO:0010276: phytol kinase activity	0.00E+00
4	GO:0008935: 1,4-dihydroxy-2-naphthoyl-CoA synthase activity	0.00E+00
5	GO:0004325: ferrochelatase activity	1.62E-04
6	GO:0030941: chloroplast targeting sequence binding	1.62E-04
7	GO:0016491: oxidoreductase activity	4.10E-04
8	GO:0032947: protein complex scaffold	6.04E-04
9	GO:0005528: FK506 binding	6.16E-04
10	GO:0043023: ribosomal large subunit binding	8.63E-04
11	GO:0016984: ribulose-bisphosphate carboxylase activity	8.63E-04
12	GO:0003777: microtubule motor activity	8.93E-04
13	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	1.14E-03
14	GO:0016987: sigma factor activity	1.14E-03
15	GO:0043015: gamma-tubulin binding	1.14E-03
16	GO:0043495: protein anchor	1.14E-03
17	GO:0003841: 1-acylglycerol-3-phosphate O-acyltransferase activity	1.14E-03
18	GO:0001053: plastid sigma factor activity	1.14E-03
19	GO:0051861: glycolipid binding	1.14E-03
20	GO:0051011: microtubule minus-end binding	1.45E-03
21	GO:0048038: quinone binding	1.47E-03
22	GO:0004332: fructose-bisphosphate aldolase activity	1.78E-03
23	GO:0004605: phosphatidate cytidylyltransferase activity	1.78E-03
24	GO:0015631: tubulin binding	2.14E-03
25	GO:0004559: alpha-mannosidase activity	2.14E-03
26	GO:0019899: enzyme binding	2.52E-03
27	GO:0008017: microtubule binding	2.57E-03
28	GO:0005381: iron ion transmembrane transporter activity	4.22E-03
29	GO:0051537: 2 iron, 2 sulfur cluster binding	4.81E-03
30	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	5.19E-03
31	GO:0005089: Rho guanyl-nucleotide exchange factor activity	5.19E-03
32	GO:0008233: peptidase activity	5.42E-03
33	GO:0003690: double-stranded DNA binding	6.20E-03
34	GO:0042973: glucan endo-1,3-beta-D-glucosidase activity	6.76E-03
35	GO:0004190: aspartic-type endopeptidase activity	7.32E-03
36	GO:0003714: transcription corepressor activity	8.48E-03
37	GO:0051536: iron-sulfur cluster binding	8.48E-03
38	GO:0005345: purine nucleobase transmembrane transporter activity	9.09E-03
39	GO:0004176: ATP-dependent peptidase activity	9.72E-03
40	GO:0004519: endonuclease activity	1.01E-02
41	GO:0019843: rRNA binding	1.07E-02
42	GO:0022891: substrate-specific transmembrane transporter activity	1.10E-02
43	GO:0003727: single-stranded RNA binding	1.17E-02
44	GO:0008080: N-acetyltransferase activity	1.38E-02
45	GO:0046933: proton-transporting ATP synthase activity, rotational mechanism	1.38E-02
46	GO:0010181: FMN binding	1.45E-02
47	GO:0004872: receptor activity	1.52E-02
48	GO:0005200: structural constituent of cytoskeleton	1.91E-02
49	GO:0016168: chlorophyll binding	2.16E-02
50	GO:0008236: serine-type peptidase activity	2.42E-02
51	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	2.51E-02
52	GO:0051539: 4 iron, 4 sulfur cluster binding	3.26E-02
53	GO:0005198: structural molecule activity	3.86E-02
54	GO:0003899: DNA-directed 5'-3' RNA polymerase activity	4.39E-02
55	GO:0009055: electron carrier activity	4.48E-02
56	GO:0015171: amino acid transmembrane transporter activity	4.72E-02

Rank	GO Term	Adjusted P value
1	GO:0009507: chloroplast	1.20E-20
2	GO:0009535: chloroplast thylakoid membrane	1.21E-14
3	GO:0009543: chloroplast thylakoid lumen	1.11E-06
4	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	3.56E-06
5	GO:0055035: plastid thylakoid membrane	3.35E-05
6	GO:0042651: thylakoid membrane	3.38E-05
7	GO:0009941: chloroplast envelope	6.17E-05
8	GO:0031969: chloroplast membrane	1.72E-04
9	GO:0009570: chloroplast stroma	2.06E-04
10	GO:0009579: thylakoid	3.09E-04
11	GO:0008274: gamma-tubulin ring complex	3.69E-04
12	GO:0030095: chloroplast photosystem II	4.47E-04
13	GO:0009528: plastid inner membrane	6.04E-04
14	GO:0009573: chloroplast ribulose bisphosphate carboxylase complex	6.04E-04
15	GO:0009654: photosystem II oxygen evolving complex	6.78E-04
16	GO:0000923: equatorial microtubule organizing center	8.63E-04
17	GO:0005874: microtubule	9.80E-04
18	GO:0030660: Golgi-associated vesicle membrane	1.14E-03
19	GO:0071556: integral component of lumenal side of endoplasmic reticulum membrane	1.14E-03
20	GO:0009526: plastid envelope	1.14E-03
21	GO:0030286: dynein complex	1.14E-03
22	GO:0019898: extrinsic component of membrane	1.37E-03
23	GO:0072686: mitotic spindle	1.45E-03
24	GO:0045261: proton-transporting ATP synthase complex, catalytic core F(1)	1.78E-03
25	GO:0010005: cortical microtubule, transverse to long axis	2.14E-03
26	GO:0031359: integral component of chloroplast outer membrane	2.52E-03
27	GO:0071458: integral component of cytoplasmic side of endoplasmic reticulum membrane	2.91E-03
28	GO:0005819: spindle	3.77E-03
29	GO:0000922: spindle pole	3.77E-03
30	GO:0031977: thylakoid lumen	4.10E-03
31	GO:0055028: cortical microtubule	4.69E-03
32	GO:0016324: apical plasma membrane	4.69E-03
33	GO:0005765: lysosomal membrane	5.19E-03
34	GO:0005938: cell cortex	6.22E-03
35	GO:0009508: plastid chromosome	6.22E-03
36	GO:0009574: preprophase band	6.22E-03
37	GO:0005875: microtubule associated complex	7.90E-03
38	GO:0009706: chloroplast inner membrane	8.52E-03
39	GO:0005871: kinesin complex	1.24E-02
40	GO:0009523: photosystem II	1.52E-02
41	GO:0009505: plant-type cell wall	1.81E-02
42	GO:0009295: nucleoid	1.91E-02
43	GO:0010319: stromule	1.91E-02
44	GO:0009534: chloroplast thylakoid	2.38E-02
45	GO:0009707: chloroplast outer membrane	2.51E-02
46	GO:0043231: intracellular membrane-bounded organelle	4.60E-02