co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT4G23620

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0044843: cell cycle G1/S phase transition	0.00E+00
2	GO:0071731: response to nitric oxide	0.00E+00
3	GO:0051050: positive regulation of transport	0.00E+00
4	GO:0006412: translation	1.37E-07
5	GO:0006458: 'de novo' protein folding	7.36E-06
6	GO:0010162: seed dormancy process	3.31E-05
7	GO:0006177: GMP biosynthetic process	4.04E-05
8	GO:0000494: box C/D snoRNA 3'-end processing	4.04E-05
9	GO:1990258: histone glutamine methylation	4.04E-05
10	GO:0006364: rRNA processing	6.29E-05
11	GO:0009944: polarity specification of adaxial/abaxial axis	9.13E-05
12	GO:0045041: protein import into mitochondrial intermembrane space	1.00E-04
13	GO:0061077: chaperone-mediated protein folding	1.13E-04
14	GO:0007005: mitochondrion organization	1.25E-04
15	GO:0009294: DNA mediated transformation	1.38E-04
16	GO:0006164: purine nucleotide biosynthetic process	2.55E-04
17	GO:0051131: chaperone-mediated protein complex assembly	2.55E-04
18	GO:0031167: rRNA methylation	4.37E-04
19	GO:0016554: cytidine to uridine editing	5.37E-04
20	GO:0000741: karyogamy	5.37E-04
21	GO:0000462: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	6.40E-04
22	GO:0042026: protein refolding	6.40E-04
23	GO:0001558: regulation of cell growth	9.77E-04
24	GO:0001510: RNA methylation	9.77E-04
25	GO:0006189: 'de novo' IMP biosynthetic process	1.10E-03
26	GO:0007338: single fertilization	1.10E-03
27	GO:0000398: mRNA splicing, via spliceosome	1.57E-03
28	GO:0009735: response to cytokinin	1.58E-03
29	GO:0000027: ribosomal large subunit assembly	2.39E-03
30	GO:0051302: regulation of cell division	2.55E-03
31	GO:0008033: tRNA processing	3.61E-03
32	GO:0000413: protein peptidyl-prolyl isomerization	3.61E-03
33	GO:0042254: ribosome biogenesis	3.64E-03
34	GO:0010197: polar nucleus fusion	3.80E-03
35	GO:0080156: mitochondrial mRNA modification	4.38E-03
36	GO:0009567: double fertilization forming a zygote and endosperm	5.00E-03
37	GO:0016049: cell growth	6.54E-03
38	GO:0048527: lateral root development	7.49E-03
39	GO:0046686: response to cadmium ion	7.55E-03
40	GO:0000154: rRNA modification	1.03E-02
41	GO:0016569: covalent chromatin modification	1.45E-02
42	GO:0009553: embryo sac development	1.48E-02
43	GO:0006457: protein folding	1.50E-02
44	GO:0009451: RNA modification	2.26E-02
45	GO:0009723: response to ethylene	3.37E-02
46	GO:0045892: negative regulation of transcription, DNA-templated	4.07E-02
47	GO:0009408: response to heat	4.67E-02
48	GO:0048364: root development	4.81E-02

Rank	GO Term	Adjusted P value
1	GO:0050355: triphosphatase activity	0.00E+00
2	GO:0016018: cyclosporin A binding	0.00E+00
3	GO:0004641: phosphoribosylformylglycinamidine cyclo-ligase activity	0.00E+00
4	GO:0003735: structural constituent of ribosome	1.43E-09
5	GO:0044183: protein binding involved in protein folding	3.18E-07
6	GO:0003723: RNA binding	8.03E-06
7	GO:0030515: snoRNA binding	1.02E-05
8	GO:1990259: histone-glutamine methyltransferase activity	4.04E-05
9	GO:0004407: histone deacetylase activity	9.13E-05
10	GO:0003938: IMP dehydrogenase activity	1.00E-04
11	GO:0019843: rRNA binding	1.47E-04
12	GO:0008649: rRNA methyltransferase activity	1.73E-04
13	GO:0070181: small ribosomal subunit rRNA binding	1.73E-04
14	GO:0050897: cobalt ion binding	5.28E-04
15	GO:0003746: translation elongation factor activity	5.76E-04
16	GO:0008235: metalloexopeptidase activity	7.49E-04
17	GO:0051082: unfolded protein binding	1.36E-03
18	GO:0000049: tRNA binding	1.63E-03
19	GO:0000166: nucleotide binding	1.77E-03
20	GO:0003729: mRNA binding	7.12E-03
21	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	1.06E-02
22	GO:0005507: copper ion binding	1.65E-02
23	GO:0005525: GTP binding	1.91E-02
24	GO:0003924: GTPase activity	4.67E-02
25	GO:0016787: hydrolase activity	5.00E-02

Rank	GO Term	Adjusted P value
1	GO:0005832: chaperonin-containing T-complex	0.00E+00
2	GO:0005730: nucleolus	6.54E-10
3	GO:0005840: ribosome	3.83E-08
4	GO:0032040: small-subunit processome	4.12E-07
5	GO:0031428: box C/D snoRNP complex	5.05E-06
6	GO:0005739: mitochondrion	5.95E-06
7	GO:0022626: cytosolic ribosome	2.10E-05
8	GO:0022627: cytosolic small ribosomal subunit	2.23E-05
9	GO:0015030: Cajal body	2.74E-05
10	GO:0071013: catalytic step 2 spliceosome	3.96E-05
11	GO:0005662: DNA replication factor A complex	4.04E-05
12	GO:0022625: cytosolic large ribosomal subunit	5.07E-05
13	GO:0005747: mitochondrial respiratory chain complex I	8.48E-05
14	GO:0005829: cytosol	1.28E-04
15	GO:0005759: mitochondrial matrix	2.02E-04
16	GO:0005774: vacuolar membrane	2.33E-04
17	GO:0005682: U5 snRNP	3.43E-04
18	GO:0005687: U4 snRNP	4.37E-04
19	GO:0015934: large ribosomal subunit	5.28E-04
20	GO:0000974: Prp19 complex	5.37E-04
21	GO:0071004: U2-type prespliceosome	8.61E-04
22	GO:0046540: U4/U6 x U5 tri-snRNP complex	9.77E-04
23	GO:0009536: plastid	1.03E-03
24	GO:0005685: U1 snRNP	1.10E-03
25	GO:0071011: precatalytic spliceosome	1.22E-03
26	GO:0005686: U2 snRNP	1.35E-03
27	GO:0019013: viral nucleocapsid	1.77E-03
28	GO:0015935: small ribosomal subunit	2.72E-03
29	GO:0080008: Cul4-RING E3 ubiquitin ligase complex	3.91E-03
30	GO:0030529: intracellular ribonucleoprotein complex	5.64E-03
31	GO:0005618: cell wall	6.05E-03
32	GO:0009506: plasmodesma	1.16E-02
33	GO:0005732: small nucleolar ribonucleoprotein complex	1.60E-02
34	GO:0005654: nucleoplasm	1.74E-02
35	GO:0009543: chloroplast thylakoid lumen	1.77E-02
36	GO:0005622: intracellular	2.06E-02
37	GO:0005773: vacuole	3.54E-02