co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT4G23496

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0048512: circadian behavior	0.00E+00
2	GO:1905421: regulation of plant organ morphogenesis	0.00E+00
3	GO:0002184: cytoplasmic translational termination	0.00E+00
4	GO:0030155: regulation of cell adhesion	0.00E+00
5	GO:0046838: phosphorylated carbohydrate dephosphorylation	0.00E+00
6	GO:0090279: regulation of calcium ion import	0.00E+00
7	GO:2000042: negative regulation of double-strand break repair via homologous recombination	0.00E+00
8	GO:0080127: fruit septum development	0.00E+00
9	GO:0015717: triose phosphate transport	0.00E+00
10	GO:0007172: signal complex assembly	0.00E+00
11	GO:0018023: peptidyl-lysine trimethylation	0.00E+00
12	GO:0015727: lactate transport	0.00E+00
13	GO:0071474: cellular hyperosmotic response	0.00E+00
14	GO:0015979: photosynthesis	1.03E-11
15	GO:0009773: photosynthetic electron transport in photosystem I	4.95E-10
16	GO:0010021: amylopectin biosynthetic process	1.13E-06
17	GO:0010207: photosystem II assembly	5.98E-06
18	GO:0018026: peptidyl-lysine monomethylation	8.28E-06
19	GO:0030388: fructose 1,6-bisphosphate metabolic process	8.28E-06
20	GO:0010027: thylakoid membrane organization	1.13E-05
21	GO:0061077: chaperone-mediated protein folding	1.89E-05
22	GO:0032544: plastid translation	2.77E-05
23	GO:0006000: fructose metabolic process	2.85E-05
24	GO:0010206: photosystem II repair	3.78E-05
25	GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly	6.19E-05
26	GO:0009658: chloroplast organization	6.41E-05
27	GO:0019252: starch biosynthetic process	6.85E-05
28	GO:0005983: starch catabolic process	1.00E-04
29	GO:0006094: gluconeogenesis	1.22E-04
30	GO:0015995: chlorophyll biosynthetic process	2.04E-04
31	GO:0042549: photosystem II stabilization	2.39E-04
32	GO:0018298: protein-chromophore linkage	2.43E-04
33	GO:0009768: photosynthesis, light harvesting in photosystem I	2.70E-04
34	GO:1901259: chloroplast rRNA processing	3.21E-04
35	GO:0000023: maltose metabolic process	4.32E-04
36	GO:0000025: maltose catabolic process	4.32E-04
37	GO:0019294: keto-3-deoxy-D-manno-octulosonic acid biosynthetic process	4.32E-04
38	GO:0005980: glycogen catabolic process	4.32E-04
39	GO:0043953: protein transport by the Tat complex	4.32E-04
40	GO:0065002: intracellular protein transmembrane transport	4.32E-04
41	GO:0043686: co-translational protein modification	4.32E-04
42	GO:0080093: regulation of photorespiration	4.32E-04
43	GO:0043007: maintenance of rDNA	4.32E-04
44	GO:0031998: regulation of fatty acid beta-oxidation	4.32E-04
45	GO:0009409: response to cold	4.47E-04
46	GO:0005978: glycogen biosynthetic process	5.18E-04
47	GO:0006810: transport	5.65E-04
48	GO:0006002: fructose 6-phosphate metabolic process	6.32E-04
49	GO:0010205: photoinhibition	8.92E-04
50	GO:0080181: lateral root branching	9.33E-04
51	GO:0051262: protein tetramerization	9.33E-04
52	GO:0035304: regulation of protein dephosphorylation	9.33E-04
53	GO:0019388: galactose catabolic process	9.33E-04
54	GO:0005976: polysaccharide metabolic process	9.33E-04
55	GO:0031648: protein destabilization	9.33E-04
56	GO:0006782: protoporphyrinogen IX biosynthetic process	1.04E-03
57	GO:0019684: photosynthesis, light reaction	1.19E-03
58	GO:0048281: inflorescence morphogenesis	1.52E-03
59	GO:0009405: pathogenesis	1.52E-03
60	GO:0035436: triose phosphate transmembrane transport	1.52E-03
61	GO:0016050: vesicle organization	1.52E-03
62	GO:0005977: glycogen metabolic process	1.52E-03
63	GO:0005986: sucrose biosynthetic process	1.55E-03
64	GO:0016311: dephosphorylation	1.61E-03
65	GO:0009266: response to temperature stimulus	1.75E-03
66	GO:0005975: carbohydrate metabolic process	1.75E-03
67	GO:0010239: chloroplast mRNA processing	2.19E-03
68	GO:0010306: rhamnogalacturonan II biosynthetic process	2.19E-03
69	GO:0010731: protein glutathionylation	2.19E-03
70	GO:1901332: negative regulation of lateral root development	2.19E-03
71	GO:0010148: transpiration	2.19E-03
72	GO:0009590: detection of gravity	2.19E-03
73	GO:0071484: cellular response to light intensity	2.19E-03
74	GO:0009765: photosynthesis, light harvesting	2.95E-03
75	GO:0006109: regulation of carbohydrate metabolic process	2.95E-03
76	GO:0015994: chlorophyll metabolic process	2.95E-03
77	GO:0022622: root system development	2.95E-03
78	GO:0010600: regulation of auxin biosynthetic process	2.95E-03
79	GO:0006552: leucine catabolic process	2.95E-03
80	GO:0015713: phosphoglycerate transport	2.95E-03
81	GO:0006808: regulation of nitrogen utilization	2.95E-03
82	GO:0015976: carbon utilization	2.95E-03
83	GO:0045454: cell redox homeostasis	3.13E-03
84	GO:0009735: response to cytokinin	3.18E-03
85	GO:0016120: carotene biosynthetic process	3.78E-03
86	GO:0031365: N-terminal protein amino acid modification	3.78E-03
87	GO:0006097: glyoxylate cycle	3.78E-03
88	GO:0042793: transcription from plastid promoter	4.68E-03
89	GO:0010190: cytochrome b6f complex assembly	4.68E-03
90	GO:0003006: developmental process involved in reproduction	4.68E-03
91	GO:0009643: photosynthetic acclimation	4.68E-03
92	GO:0009635: response to herbicide	4.68E-03
93	GO:0009955: adaxial/abaxial pattern specification	5.64E-03
94	GO:0010244: response to low fluence blue light stimulus by blue low-fluence system	5.64E-03
95	GO:0006458: 'de novo' protein folding	5.64E-03
96	GO:0042026: protein refolding	5.64E-03
97	GO:0030488: tRNA methylation	5.64E-03
98	GO:0070370: cellular heat acclimation	6.67E-03
99	GO:1900057: positive regulation of leaf senescence	6.67E-03
100	GO:0009645: response to low light intensity stimulus	6.67E-03
101	GO:0009769: photosynthesis, light harvesting in photosystem II	6.67E-03
102	GO:0022904: respiratory electron transport chain	6.67E-03
103	GO:0010103: stomatal complex morphogenesis	6.67E-03
104	GO:0032880: regulation of protein localization	6.67E-03
105	GO:0010161: red light signaling pathway	6.67E-03
106	GO:1901657: glycosyl compound metabolic process	6.80E-03
107	GO:0010928: regulation of auxin mediated signaling pathway	7.76E-03
108	GO:0009704: de-etiolation	7.76E-03
109	GO:0006353: DNA-templated transcription, termination	7.76E-03
110	GO:0000105: histidine biosynthetic process	7.76E-03
111	GO:0010099: regulation of photomorphogenesis	8.91E-03
112	GO:0001558: regulation of cell growth	8.91E-03
113	GO:0080167: response to karrikin	9.00E-03
114	GO:0051865: protein autoubiquitination	1.01E-02
115	GO:0006098: pentose-phosphate shunt	1.01E-02
116	GO:0048507: meristem development	1.01E-02
117	GO:0006783: heme biosynthetic process	1.01E-02
118	GO:0006779: porphyrin-containing compound biosynthetic process	1.14E-02
119	GO:0005982: starch metabolic process	1.14E-02
120	GO:0010218: response to far red light	1.25E-02
121	GO:0031627: telomeric loop formation	1.27E-02
122	GO:0048829: root cap development	1.27E-02
123	GO:0009631: cold acclimation	1.31E-02
124	GO:0010015: root morphogenesis	1.41E-02
125	GO:0009089: lysine biosynthetic process via diaminopimelate	1.41E-02
126	GO:0006913: nucleocytoplasmic transport	1.41E-02
127	GO:0009073: aromatic amino acid family biosynthetic process	1.41E-02
128	GO:0043085: positive regulation of catalytic activity	1.41E-02
129	GO:0006415: translational termination	1.41E-02
130	GO:0009750: response to fructose	1.41E-02
131	GO:0009637: response to blue light	1.44E-02
132	GO:0045037: protein import into chloroplast stroma	1.55E-02
133	GO:0010582: floral meristem determinacy	1.55E-02
134	GO:0071365: cellular response to auxin stimulus	1.55E-02
135	GO:2000012: regulation of auxin polar transport	1.70E-02
136	GO:0010628: positive regulation of gene expression	1.70E-02
137	GO:0006108: malate metabolic process	1.70E-02
138	GO:0006006: glucose metabolic process	1.70E-02
139	GO:0018107: peptidyl-threonine phosphorylation	1.70E-02
140	GO:0006302: double-strand break repair	1.85E-02
141	GO:0048467: gynoecium development	1.85E-02
142	GO:0019253: reductive pentose-phosphate cycle	1.85E-02
143	GO:0009934: regulation of meristem structural organization	1.85E-02
144	GO:0010114: response to red light	1.86E-02
145	GO:0009644: response to high light intensity	2.01E-02
146	GO:0005985: sucrose metabolic process	2.01E-02
147	GO:0010030: positive regulation of seed germination	2.01E-02
148	GO:0000162: tryptophan biosynthetic process	2.17E-02
149	GO:0006636: unsaturated fatty acid biosynthetic process	2.17E-02
150	GO:0009944: polarity specification of adaxial/abaxial axis	2.33E-02
151	GO:0006289: nucleotide-excision repair	2.33E-02
152	GO:0051302: regulation of cell division	2.50E-02
153	GO:0007017: microtubule-based process	2.50E-02
154	GO:0009737: response to abscisic acid	2.61E-02
155	GO:0042254: ribosome biogenesis	2.64E-02
156	GO:0019915: lipid storage	2.68E-02
157	GO:0051321: meiotic cell cycle	2.68E-02
158	GO:0030245: cellulose catabolic process	2.85E-02
159	GO:0010017: red or far-red light signaling pathway	2.85E-02
160	GO:2000022: regulation of jasmonic acid mediated signaling pathway	2.85E-02
161	GO:0035428: hexose transmembrane transport	2.85E-02
162	GO:0009686: gibberellin biosynthetic process	3.04E-02
163	GO:0071369: cellular response to ethylene stimulus	3.04E-02
164	GO:0001944: vasculature development	3.04E-02
165	GO:0016117: carotenoid biosynthetic process	3.41E-02
166	GO:0009789: positive regulation of abscisic acid-activated signaling pathway	3.41E-02
167	GO:0008284: positive regulation of cell proliferation	3.41E-02
168	GO:0042631: cellular response to water deprivation	3.61E-02
169	GO:0018105: peptidyl-serine phosphorylation	3.68E-02
170	GO:0006412: translation	3.72E-02
171	GO:0009958: positive gravitropism	3.81E-02
172	GO:0006662: glycerol ether metabolic process	3.81E-02
173	GO:0048868: pollen tube development	3.81E-02
174	GO:0046323: glucose import	3.81E-02
175	GO:0009646: response to absence of light	4.01E-02
176	GO:0006979: response to oxidative stress	4.10E-02
177	GO:0071554: cell wall organization or biogenesis	4.42E-02
178	GO:0032502: developmental process	4.63E-02

Rank	GO Term	Adjusted P value
1	GO:0015129: lactate transmembrane transporter activity	0.00E+00
2	GO:0033728: divinyl chlorophyllide a 8-vinyl-reductase activity	0.00E+00
3	GO:0004174: electron-transferring-flavoprotein dehydrogenase activity	0.00E+00
4	GO:0080082: esculin beta-glucosidase activity	0.00E+00
5	GO:0051744: 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity	0.00E+00
6	GO:0016166: phytoene dehydrogenase activity	0.00E+00
7	GO:0008807: carboxyvinyl-carboxyphosphonate phosphorylmutase activity	0.00E+00
8	GO:0004567: beta-mannosidase activity	0.00E+00
9	GO:0048039: ubiquinone binding	0.00E+00
10	GO:0016730: oxidoreductase activity, acting on iron-sulfur proteins as donors	0.00E+00
11	GO:0009899: ent-kaurene synthase activity	0.00E+00
12	GO:0080081: 4-methylumbelliferyl-beta-D-glucopyranoside beta-glucosidase activity	0.00E+00
13	GO:0003949: 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase activity	0.00E+00
14	GO:0047668: amygdalin beta-glucosidase activity	0.00E+00
15	GO:0043783: oxidoreductase activity, oxidizing metal ions with flavin as acceptor	0.00E+00
16	GO:0080083: beta-gentiobiose beta-glucosidase activity	0.00E+00
17	GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity	8.28E-06
18	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	1.09E-04
19	GO:0016279: protein-lysine N-methyltransferase activity	1.09E-04
20	GO:0031409: pigment binding	2.03E-04
21	GO:0005528: FK506 binding	2.35E-04
22	GO:2001070: starch binding	2.39E-04
23	GO:0019843: rRNA binding	4.05E-04
24	GO:0005227: calcium activated cation channel activity	4.32E-04
25	GO:0080079: cellobiose glucosidase activity	4.32E-04
26	GO:0008184: glycogen phosphorylase activity	4.32E-04
27	GO:0008676: 3-deoxy-8-phosphooctulonate synthase activity	4.32E-04
28	GO:0004134: 4-alpha-glucanotransferase activity	4.32E-04
29	GO:0050308: sugar-phosphatase activity	4.32E-04
30	GO:0004645: phosphorylase activity	4.32E-04
31	GO:0010242: oxygen evolving activity	4.32E-04
32	GO:0019203: carbohydrate phosphatase activity	4.32E-04
33	GO:0004853: uroporphyrinogen decarboxylase activity	4.32E-04
34	GO:0042586: peptide deformylase activity	4.32E-04
35	GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity	4.32E-04
36	GO:0042286: glutamate-1-semialdehyde 2,1-aminomutase activity	4.32E-04
37	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	6.79E-04
38	GO:0048038: quinone binding	7.72E-04
39	GO:0033201: alpha-1,4-glucan synthase activity	9.33E-04
40	GO:0018708: thiol S-methyltransferase activity	9.33E-04
41	GO:0003844: 1,4-alpha-glucan branching enzyme activity	9.33E-04
42	GO:0004614: phosphoglucomutase activity	9.33E-04
43	GO:0019156: isoamylase activity	9.33E-04
44	GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase	9.33E-04
45	GO:0008967: phosphoglycolate phosphatase activity	9.33E-04
46	GO:0047746: chlorophyllase activity	9.33E-04
47	GO:0042389: omega-3 fatty acid desaturase activity	9.33E-04
48	GO:0016868: intramolecular transferase activity, phosphotransferases	9.33E-04
49	GO:0010297: heteropolysaccharide binding	9.33E-04
50	GO:0009977: proton motive force dependent protein transmembrane transporter activity	9.33E-04
51	GO:0044183: protein binding involved in protein folding	1.19E-03
52	GO:0016168: chlorophyll binding	1.31E-03
53	GO:0043169: cation binding	1.52E-03
54	GO:0004373: glycogen (starch) synthase activity	1.52E-03
55	GO:0005504: fatty acid binding	1.52E-03
56	GO:0017150: tRNA dihydrouridine synthase activity	1.52E-03
57	GO:0090729: toxin activity	1.52E-03
58	GO:0003913: DNA photolyase activity	1.52E-03
59	GO:0045174: glutathione dehydrogenase (ascorbate) activity	1.52E-03
60	GO:0071917: triose-phosphate transmembrane transporter activity	1.52E-03
61	GO:0004565: beta-galactosidase activity	1.55E-03
62	GO:0019201: nucleotide kinase activity	2.19E-03
63	GO:0016149: translation release factor activity, codon specific	2.19E-03
64	GO:0016851: magnesium chelatase activity	2.19E-03
65	GO:0043023: ribosomal large subunit binding	2.19E-03
66	GO:0080032: methyl jasmonate esterase activity	2.95E-03
67	GO:0045430: chalcone isomerase activity	2.95E-03
68	GO:0009011: starch synthase activity	2.95E-03
69	GO:0019199: transmembrane receptor protein kinase activity	2.95E-03
70	GO:0042277: peptide binding	2.95E-03
71	GO:0015120: phosphoglycerate transmembrane transporter activity	2.95E-03
72	GO:0030570: pectate lyase activity	3.51E-03
73	GO:0043621: protein self-association	3.55E-03
74	GO:0080030: methyl indole-3-acetate esterase activity	4.68E-03
75	GO:0004332: fructose-bisphosphate aldolase activity	4.68E-03
76	GO:0004556: alpha-amylase activity	4.68E-03
77	GO:0042578: phosphoric ester hydrolase activity	4.68E-03
78	GO:0016615: malate dehydrogenase activity	4.68E-03
79	GO:0009055: electron carrier activity	5.12E-03
80	GO:0051920: peroxiredoxin activity	5.64E-03
81	GO:0004017: adenylate kinase activity	5.64E-03
82	GO:0004602: glutathione peroxidase activity	5.64E-03
83	GO:0030060: L-malate dehydrogenase activity	5.64E-03
84	GO:0005261: cation channel activity	5.64E-03
85	GO:0000287: magnesium ion binding	6.31E-03
86	GO:0009881: photoreceptor activity	6.67E-03
87	GO:0051082: unfolded protein binding	7.38E-03
88	GO:0015035: protein disulfide oxidoreductase activity	7.66E-03
89	GO:0004033: aldo-keto reductase (NADP) activity	7.76E-03
90	GO:0005337: nucleoside transmembrane transporter activity	7.76E-03
91	GO:0016209: antioxidant activity	7.76E-03
92	GO:0008173: RNA methyltransferase activity	8.91E-03
93	GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water	8.91E-03
94	GO:0008138: protein tyrosine/serine/threonine phosphatase activity	1.01E-02
95	GO:0003747: translation release factor activity	1.01E-02
96	GO:0102483: scopolin beta-glucosidase activity	1.02E-02
97	GO:0008047: enzyme activator activity	1.27E-02
98	GO:0030145: manganese ion binding	1.31E-02
99	GO:0003691: double-stranded telomeric DNA binding	1.41E-02
100	GO:0003993: acid phosphatase activity	1.50E-02
101	GO:0004521: endoribonuclease activity	1.55E-02
102	GO:0008422: beta-glucosidase activity	1.57E-02
103	GO:0004089: carbonate dehydratase activity	1.70E-02
104	GO:0031072: heat shock protein binding	1.70E-02
105	GO:0008083: growth factor activity	1.85E-02
106	GO:0008266: poly(U) RNA binding	1.85E-02
107	GO:0005198: structural molecule activity	2.09E-02
108	GO:0003735: structural constituent of ribosome	2.27E-02
109	GO:0004857: enzyme inhibitor activity	2.33E-02
110	GO:0033612: receptor serine/threonine kinase binding	2.68E-02
111	GO:0019706: protein-cysteine S-palmitoyltransferase activity	2.68E-02
112	GO:0008408: 3'-5' exonuclease activity	2.68E-02
113	GO:0008810: cellulase activity	3.04E-02
114	GO:0022891: substrate-specific transmembrane transporter activity	3.04E-02
115	GO:0003756: protein disulfide isomerase activity	3.22E-02
116	GO:0047134: protein-disulfide reductase activity	3.41E-02
117	GO:0004791: thioredoxin-disulfide reductase activity	4.01E-02
118	GO:0005355: glucose transmembrane transporter activity	4.01E-02
119	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	4.85E-02
120	GO:0004252: serine-type endopeptidase activity	4.94E-02
121	GO:0030170: pyridoxal phosphate binding	4.94E-02

Rank	GO Term	Adjusted P value
1	GO:0043235: receptor complex	0.00E+00
2	GO:0010368: chloroplast isoamylase complex	0.00E+00
3	GO:0005943: phosphatidylinositol 3-kinase complex, class IA	0.00E+00
4	GO:0042579: microbody	0.00E+00
5	GO:0017133: mitochondrial electron transfer flavoprotein complex	0.00E+00
6	GO:0009507: chloroplast	2.21E-44
7	GO:0009534: chloroplast thylakoid	1.72E-33
8	GO:0009535: chloroplast thylakoid membrane	4.38E-30
9	GO:0009570: chloroplast stroma	6.41E-25
10	GO:0009941: chloroplast envelope	2.44E-20
11	GO:0009579: thylakoid	1.21E-17
12	GO:0009543: chloroplast thylakoid lumen	7.44E-11
13	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	9.07E-09
14	GO:0010287: plastoglobule	2.24E-08
15	GO:0030095: chloroplast photosystem II	1.32E-07
16	GO:0031977: thylakoid lumen	4.23E-06
17	GO:0009538: photosystem I reaction center	1.95E-05
18	GO:0009508: plastid chromosome	1.22E-04
19	GO:0010319: stromule	1.25E-04
20	GO:0009295: nucleoid	1.25E-04
21	GO:0030076: light-harvesting complex	1.74E-04
22	GO:0009654: photosystem II oxygen evolving complex	2.70E-04
23	GO:0031361: integral component of thylakoid membrane	4.32E-04
24	GO:0000791: euchromatin	4.32E-04
25	GO:0048046: apoplast	4.65E-04
26	GO:0009501: amyloplast	5.18E-04
27	GO:0009522: photosystem I	6.47E-04
28	GO:0009523: photosystem II	7.07E-04
29	GO:0019898: extrinsic component of membrane	7.07E-04
30	GO:0000427: plastid-encoded plastid RNA polymerase complex	9.33E-04
31	GO:0030093: chloroplast photosystem I	9.33E-04
32	GO:0030870: Mre11 complex	9.33E-04
33	GO:0033281: TAT protein transport complex	1.52E-03
34	GO:0010007: magnesium chelatase complex	1.52E-03
35	GO:0009509: chromoplast	1.52E-03
36	GO:0042651: thylakoid membrane	2.68E-03
37	GO:0000795: synaptonemal complex	3.78E-03
38	GO:0009840: chloroplastic endopeptidase Clp complex	5.64E-03
39	GO:0016272: prefoldin complex	5.64E-03
40	GO:0005840: ribosome	5.85E-03
41	GO:0009533: chloroplast stromal thylakoid	6.67E-03
42	GO:0009706: chloroplast inner membrane	7.38E-03
43	GO:0031305: integral component of mitochondrial inner membrane	7.76E-03
44	GO:0009536: plastid	8.20E-03
45	GO:0000783: nuclear telomere cap complex	8.91E-03
46	GO:0008180: COP9 signalosome	1.01E-02
47	GO:0045298: tubulin complex	1.01E-02
48	GO:0005763: mitochondrial small ribosomal subunit	1.01E-02
49	GO:0055028: cortical microtubule	1.27E-02
50	GO:0005740: mitochondrial envelope	1.27E-02
51	GO:0030659: cytoplasmic vesicle membrane	1.85E-02
52	GO:0015935: small ribosomal subunit	2.68E-02
53	GO:0009532: plastid stroma	2.68E-02
54	GO:0031969: chloroplast membrane	3.37E-02
55	GO:0000785: chromatin	4.63E-02