co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT4G22990

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0016123: xanthophyll biosynthetic process	4.04E-06
2	GO:0009658: chloroplast organization	4.22E-05
3	GO:0046900: tetrahydrofolylpolyglutamate metabolic process	4.60E-05
4	GO:0042371: vitamin K biosynthetic process	4.60E-05
5	GO:0048438: floral whorl development	4.60E-05
6	GO:0010024: phytochromobilin biosynthetic process	1.13E-04
7	GO:0010275: NAD(P)H dehydrogenase complex assembly	1.13E-04
8	GO:0033014: tetrapyrrole biosynthetic process	2.85E-04
9	GO:0031935: regulation of chromatin silencing	3.84E-04
10	GO:0009765: photosynthesis, light harvesting	3.84E-04
11	GO:0016120: carotene biosynthetic process	4.88E-04
12	GO:0010190: cytochrome b6f complex assembly	5.98E-04
13	GO:0009910: negative regulation of flower development	6.19E-04
14	GO:0010076: maintenance of floral meristem identity	7.13E-04
15	GO:0010019: chloroplast-nucleus signaling pathway	7.13E-04
16	GO:1900056: negative regulation of leaf senescence	8.33E-04
17	GO:0080111: DNA demethylation	8.33E-04
18	GO:0048564: photosystem I assembly	9.57E-04
19	GO:0042255: ribosome assembly	9.57E-04
20	GO:0006353: DNA-templated transcription, termination	9.57E-04
21	GO:0009704: de-etiolation	9.57E-04
22	GO:0006783: heme biosynthetic process	1.22E-03
23	GO:0006779: porphyrin-containing compound biosynthetic process	1.36E-03
24	GO:0010380: regulation of chlorophyll biosynthetic process	1.36E-03
25	GO:0010582: floral meristem determinacy	1.81E-03
26	GO:0009767: photosynthetic electron transport chain	1.98E-03
27	GO:0006541: glutamine metabolic process	2.14E-03
28	GO:0009266: response to temperature stimulus	2.14E-03
29	GO:0006289: nucleotide-excision repair	2.67E-03
30	GO:0009451: RNA modification	2.80E-03
31	GO:0007017: microtubule-based process	2.85E-03
32	GO:0016226: iron-sulfur cluster assembly	3.23E-03
33	GO:0016117: carotenoid biosynthetic process	3.83E-03
34	GO:0008033: tRNA processing	4.04E-03
35	GO:0007264: small GTPase mediated signal transduction	5.13E-03
36	GO:0016032: viral process	5.13E-03
37	GO:0032502: developmental process	5.13E-03
38	GO:0009788: negative regulation of abscisic acid-activated signaling pathway	6.57E-03
39	GO:0006260: DNA replication	1.23E-02
40	GO:0000165: MAPK cascade	1.23E-02
41	GO:0006417: regulation of translation	1.42E-02
42	GO:0009793: embryo development ending in seed dormancy	1.54E-02
43	GO:0055114: oxidation-reduction process	2.44E-02
44	GO:0007166: cell surface receptor signaling pathway	2.75E-02
45	GO:0008380: RNA splicing	2.84E-02
46	GO:0045944: positive regulation of transcription from RNA polymerase II promoter	3.23E-02
47	GO:0080167: response to karrikin	3.98E-02
48	GO:0045892: negative regulation of transcription, DNA-templated	4.57E-02

Rank	GO Term	Adjusted P value
1	GO:0050619: phytochromobilin:ferredoxin oxidoreductase activity	0.00E+00
2	GO:0045435: lycopene epsilon cyclase activity	0.00E+00
3	GO:0016636: oxidoreductase activity, acting on the CH-CH group of donors, iron-sulfur protein as acceptor	0.00E+00
4	GO:0008935: 1,4-dihydroxy-2-naphthoyl-CoA synthase activity	0.00E+00
5	GO:0004325: ferrochelatase activity	4.60E-05
6	GO:0008242: omega peptidase activity	4.60E-05
7	GO:0034722: gamma-glutamyl-peptidase activity	1.13E-04
8	GO:0032947: protein complex scaffold	1.95E-04
9	GO:0004848: ureidoglycolate hydrolase activity	1.95E-04
10	GO:0000900: translation repressor activity, nucleic acid binding	1.95E-04
11	GO:0003690: double-stranded DNA binding	1.18E-03
12	GO:0016491: oxidoreductase activity	1.47E-03
13	GO:0003887: DNA-directed DNA polymerase activity	2.49E-03
14	GO:0051536: iron-sulfur cluster binding	2.67E-03
15	GO:0003727: single-stranded RNA binding	3.63E-03
16	GO:0048038: quinone binding	4.91E-03
17	GO:0004518: nuclease activity	5.13E-03
18	GO:0008483: transaminase activity	5.84E-03
19	GO:0003723: RNA binding	6.24E-03
20	GO:0003924: GTPase activity	7.68E-03
21	GO:0004519: endonuclease activity	8.35E-03
22	GO:0050897: cobalt ion binding	8.41E-03
23	GO:0005198: structural molecule activity	1.16E-02
24	GO:0003777: microtubule motor activity	1.42E-02
25	GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups	1.52E-02
26	GO:0019843: rRNA binding	1.99E-02
27	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	2.03E-02
28	GO:0000977: RNA polymerase II regulatory region sequence-specific DNA binding	2.18E-02
29	GO:0005525: GTP binding	2.25E-02
30	GO:0004675: transmembrane receptor protein serine/threonine kinase activity	2.38E-02
31	GO:0008194: UDP-glycosyltransferase activity	2.71E-02
32	GO:0008168: methyltransferase activity	3.32E-02
33	GO:0004601: peroxidase activity	3.42E-02

Rank	GO Term	Adjusted P value
1	GO:0009507: chloroplast	3.17E-07
2	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	2.71E-05
3	GO:0042651: thylakoid membrane	1.23E-04
4	GO:0030286: dynein complex	3.84E-04
5	GO:0055035: plastid thylakoid membrane	4.88E-04
6	GO:0031969: chloroplast membrane	6.60E-04
7	GO:0009840: chloroplastic endopeptidase Clp complex	7.13E-04
8	GO:0000123: histone acetyltransferase complex	8.33E-04
9	GO:0005875: microtubule associated complex	2.49E-03
10	GO:0043231: intracellular membrane-bounded organelle	8.47E-03
11	GO:0031966: mitochondrial membrane	1.26E-02
12	GO:0009570: chloroplast stroma	1.67E-02