co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT4G22800

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:1905421: regulation of plant organ morphogenesis	0.00E+00
2	GO:0002184: cytoplasmic translational termination	0.00E+00
3	GO:0030155: regulation of cell adhesion	0.00E+00
4	GO:0046838: phosphorylated carbohydrate dephosphorylation	0.00E+00
5	GO:2000042: negative regulation of double-strand break repair via homologous recombination	0.00E+00
6	GO:0006114: glycerol biosynthetic process	0.00E+00
7	GO:0018023: peptidyl-lysine trimethylation	0.00E+00
8	GO:0015979: photosynthesis	6.29E-17
9	GO:0009773: photosynthetic electron transport in photosystem I	9.97E-07
10	GO:0010027: thylakoid membrane organization	4.09E-06
11	GO:0018026: peptidyl-lysine monomethylation	4.91E-06
12	GO:0030388: fructose 1,6-bisphosphate metabolic process	4.91E-06
13	GO:0006000: fructose metabolic process	1.74E-05
14	GO:0010206: photosystem II repair	1.98E-05
15	GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly	3.86E-05
16	GO:0045454: cell redox homeostasis	6.25E-05
17	GO:0010021: amylopectin biosynthetic process	6.89E-05
18	GO:0006109: regulation of carbohydrate metabolic process	6.89E-05
19	GO:0009735: response to cytokinin	7.89E-05
20	GO:0016311: dephosphorylation	1.11E-04
21	GO:0042549: photosystem II stabilization	1.56E-04
22	GO:0061077: chaperone-mediated protein folding	1.78E-04
23	GO:0065002: intracellular protein transmembrane transport	3.29E-04
24	GO:0080093: regulation of photorespiration	3.29E-04
25	GO:0043007: maintenance of rDNA	3.29E-04
26	GO:0031998: regulation of fatty acid beta-oxidation	3.29E-04
27	GO:0005980: glycogen catabolic process	3.29E-04
28	GO:0043953: protein transport by the Tat complex	3.29E-04
29	GO:0005978: glycogen biosynthetic process	3.48E-04
30	GO:0019252: starch biosynthetic process	4.25E-04
31	GO:0032544: plastid translation	4.26E-04
32	GO:0006002: fructose 6-phosphate metabolic process	4.26E-04
33	GO:0010205: photoinhibition	6.05E-04
34	GO:0019388: galactose catabolic process	7.18E-04
35	GO:0080181: lateral root branching	7.18E-04
36	GO:0035304: regulation of protein dephosphorylation	7.18E-04
37	GO:0043085: positive regulation of catalytic activity	8.13E-04
38	GO:0019684: photosynthesis, light reaction	8.13E-04
39	GO:0015995: chlorophyll biosynthetic process	9.11E-04
40	GO:0005983: starch catabolic process	9.28E-04
41	GO:0006094: gluconeogenesis	1.05E-03
42	GO:0005986: sucrose biosynthetic process	1.05E-03
43	GO:0016050: vesicle organization	1.16E-03
44	GO:0005977: glycogen metabolic process	1.16E-03
45	GO:0048281: inflorescence morphogenesis	1.16E-03
46	GO:0009405: pathogenesis	1.16E-03
47	GO:0009266: response to temperature stimulus	1.18E-03
48	GO:0010207: photosystem II assembly	1.18E-03
49	GO:0010731: protein glutathionylation	1.67E-03
50	GO:0009590: detection of gravity	1.67E-03
51	GO:0071484: cellular response to light intensity	1.67E-03
52	GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity	1.67E-03
53	GO:0010148: transpiration	1.67E-03
54	GO:0006810: transport	1.69E-03
55	GO:0006546: glycine catabolic process	2.24E-03
56	GO:0006808: regulation of nitrogen utilization	2.24E-03
57	GO:0015976: carbon utilization	2.24E-03
58	GO:0019464: glycine decarboxylation via glycine cleavage system	2.24E-03
59	GO:0015994: chlorophyll metabolic process	2.24E-03
60	GO:0022622: root system development	2.24E-03
61	GO:0006552: leucine catabolic process	2.24E-03
62	GO:0006097: glyoxylate cycle	2.87E-03
63	GO:0006465: signal peptide processing	2.87E-03
64	GO:0006662: glycerol ether metabolic process	3.23E-03
65	GO:0009658: chloroplast organization	3.50E-03
66	GO:0010190: cytochrome b6f complex assembly	3.54E-03
67	GO:0042793: transcription from plastid promoter	3.54E-03
68	GO:0042254: ribosome biogenesis	3.60E-03
69	GO:0009409: response to cold	4.20E-03
70	GO:0030488: tRNA methylation	4.26E-03
71	GO:0009955: adaxial/abaxial pattern specification	4.26E-03
72	GO:1901259: chloroplast rRNA processing	4.26E-03
73	GO:0022904: respiratory electron transport chain	5.03E-03
74	GO:0010103: stomatal complex morphogenesis	5.03E-03
75	GO:0032880: regulation of protein localization	5.03E-03
76	GO:0010196: nonphotochemical quenching	5.03E-03
77	GO:0070370: cellular heat acclimation	5.03E-03
78	GO:0000105: histidine biosynthetic process	5.85E-03
79	GO:0009642: response to light intensity	5.85E-03
80	GO:0006353: DNA-templated transcription, termination	5.85E-03
81	GO:0006412: translation	5.96E-03
82	GO:0001558: regulation of cell growth	6.71E-03
83	GO:0042742: defense response to bacterium	6.81E-03
84	GO:0005982: starch metabolic process	8.55E-03
85	GO:0006779: porphyrin-containing compound biosynthetic process	8.55E-03
86	GO:0045490: pectin catabolic process	8.84E-03
87	GO:0055114: oxidation-reduction process	8.92E-03
88	GO:0031627: telomeric loop formation	9.53E-03
89	GO:0006782: protoporphyrinogen IX biosynthetic process	9.53E-03
90	GO:0034599: cellular response to oxidative stress	9.99E-03
91	GO:0009073: aromatic amino acid family biosynthetic process	1.06E-02
92	GO:0009750: response to fructose	1.06E-02
93	GO:0010015: root morphogenesis	1.06E-02
94	GO:0009089: lysine biosynthetic process via diaminopimelate	1.06E-02
95	GO:0006108: malate metabolic process	1.27E-02
96	GO:0006006: glucose metabolic process	1.27E-02
97	GO:0018107: peptidyl-threonine phosphorylation	1.27E-02
98	GO:0009767: photosynthetic electron transport chain	1.27E-02
99	GO:2000012: regulation of auxin polar transport	1.27E-02
100	GO:0006302: double-strand break repair	1.38E-02
101	GO:0019253: reductive pentose-phosphate cycle	1.38E-02
102	GO:0010030: positive regulation of seed germination	1.50E-02
103	GO:0005985: sucrose metabolic process	1.50E-02
104	GO:0006636: unsaturated fatty acid biosynthetic process	1.62E-02
105	GO:0000162: tryptophan biosynthetic process	1.62E-02
106	GO:0006289: nucleotide-excision repair	1.75E-02
107	GO:0009944: polarity specification of adaxial/abaxial axis	1.75E-02
108	GO:0009768: photosynthesis, light harvesting in photosystem I	1.87E-02
109	GO:0051302: regulation of cell division	1.87E-02
110	GO:0007017: microtubule-based process	1.87E-02
111	GO:0043086: negative regulation of catalytic activity	1.97E-02
112	GO:0051321: meiotic cell cycle	2.00E-02
113	GO:0048511: rhythmic process	2.00E-02
114	GO:0019915: lipid storage	2.00E-02
115	GO:0048278: vesicle docking	2.00E-02
116	GO:0030245: cellulose catabolic process	2.14E-02
117	GO:0001944: vasculature development	2.27E-02
118	GO:0009686: gibberellin biosynthetic process	2.27E-02
119	GO:0009561: megagametogenesis	2.41E-02
120	GO:0009789: positive regulation of abscisic acid-activated signaling pathway	2.55E-02
121	GO:0008284: positive regulation of cell proliferation	2.55E-02
122	GO:0042631: cellular response to water deprivation	2.70E-02
123	GO:0009958: positive gravitropism	2.85E-02
124	GO:0061025: membrane fusion	3.00E-02
125	GO:0042752: regulation of circadian rhythm	3.00E-02
126	GO:0009646: response to absence of light	3.00E-02
127	GO:0071554: cell wall organization or biogenesis	3.31E-02
128	GO:0032502: developmental process	3.47E-02
129	GO:0009790: embryo development	3.47E-02
130	GO:0010583: response to cyclopentenone	3.47E-02
131	GO:0071281: cellular response to iron ion	3.63E-02
132	GO:0009567: double fertilization forming a zygote and endosperm	3.79E-02
133	GO:0005975: carbohydrate metabolic process	4.11E-02
134	GO:0009607: response to biotic stimulus	4.47E-02
135	GO:0009627: systemic acquired resistance	4.65E-02
136	GO:0006906: vesicle fusion	4.65E-02

Rank	GO Term	Adjusted P value
1	GO:0048039: ubiquinone binding	0.00E+00
2	GO:0009899: ent-kaurene synthase activity	0.00E+00
3	GO:0003949: 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase activity	0.00E+00
4	GO:0043783: oxidoreductase activity, oxidizing metal ions with flavin as acceptor	0.00E+00
5	GO:0043136: glycerol-3-phosphatase activity	0.00E+00
6	GO:0000121: glycerol-1-phosphatase activity	0.00E+00
7	GO:0033728: divinyl chlorophyllide a 8-vinyl-reductase activity	0.00E+00
8	GO:0004174: electron-transferring-flavoprotein dehydrogenase activity	0.00E+00
9	GO:0051744: 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity	0.00E+00
10	GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity	4.91E-06
11	GO:0019843: rRNA binding	2.13E-05
12	GO:0016279: protein-lysine N-methyltransferase activity	6.89E-05
13	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	6.89E-05
14	GO:0005528: FK506 binding	1.34E-04
15	GO:0030570: pectate lyase activity	2.28E-04
16	GO:0004645: phosphorylase activity	3.29E-04
17	GO:0019203: carbohydrate phosphatase activity	3.29E-04
18	GO:0045157: electron transporter, transferring electrons within the noncyclic electron transport pathway of photosynthesis activity	3.29E-04
19	GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity	3.29E-04
20	GO:0042286: glutamate-1-semialdehyde 2,1-aminomutase activity	3.29E-04
21	GO:0008184: glycogen phosphorylase activity	3.29E-04
22	GO:0050308: sugar-phosphatase activity	3.29E-04
23	GO:0010242: oxygen evolving activity	3.29E-04
24	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	3.64E-04
25	GO:0048038: quinone binding	4.64E-04
26	GO:0008047: enzyme activator activity	7.06E-04
27	GO:0004614: phosphoglucomutase activity	7.18E-04
28	GO:0019156: isoamylase activity	7.18E-04
29	GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase	7.18E-04
30	GO:0047746: chlorophyllase activity	7.18E-04
31	GO:0042389: omega-3 fatty acid desaturase activity	7.18E-04
32	GO:0016868: intramolecular transferase activity, phosphotransferases	7.18E-04
33	GO:0009977: proton motive force dependent protein transmembrane transporter activity	7.18E-04
34	GO:0018708: thiol S-methyltransferase activity	7.18E-04
35	GO:0003844: 1,4-alpha-glucan branching enzyme activity	7.18E-04
36	GO:0008967: phosphoglycolate phosphatase activity	7.18E-04
37	GO:0015035: protein disulfide oxidoreductase activity	8.22E-04
38	GO:0031072: heat shock protein binding	1.05E-03
39	GO:0045174: glutathione dehydrogenase (ascorbate) activity	1.16E-03
40	GO:0004324: ferredoxin-NADP+ reductase activity	1.16E-03
41	GO:0043169: cation binding	1.16E-03
42	GO:0017150: tRNA dihydrouridine synthase activity	1.16E-03
43	GO:0005504: fatty acid binding	1.16E-03
44	GO:0090729: toxin activity	1.16E-03
45	GO:0008266: poly(U) RNA binding	1.18E-03
46	GO:0003735: structural constituent of ribosome	1.22E-03
47	GO:0004857: enzyme inhibitor activity	1.63E-03
48	GO:0043023: ribosomal large subunit binding	1.67E-03
49	GO:0004742: dihydrolipoyllysine-residue acetyltransferase activity	1.67E-03
50	GO:0004375: glycine dehydrogenase (decarboxylating) activity	1.67E-03
51	GO:0016851: magnesium chelatase activity	1.67E-03
52	GO:0042277: peptide binding	2.24E-03
53	GO:0080032: methyl jasmonate esterase activity	2.24E-03
54	GO:0019199: transmembrane receptor protein kinase activity	2.24E-03
55	GO:0045430: chalcone isomerase activity	2.24E-03
56	GO:0009055: electron carrier activity	2.51E-03
57	GO:0047134: protein-disulfide reductase activity	2.77E-03
58	GO:0003959: NADPH dehydrogenase activity	2.87E-03
59	GO:0000287: magnesium ion binding	3.40E-03
60	GO:0004791: thioredoxin-disulfide reductase activity	3.47E-03
61	GO:0004556: alpha-amylase activity	3.54E-03
62	GO:0016615: malate dehydrogenase activity	3.54E-03
63	GO:2001070: starch binding	3.54E-03
64	GO:0080030: methyl indole-3-acetate esterase activity	3.54E-03
65	GO:0051920: peroxiredoxin activity	4.26E-03
66	GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity	4.26E-03
67	GO:0030060: L-malate dehydrogenase activity	4.26E-03
68	GO:0051082: unfolded protein binding	4.40E-03
69	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	4.54E-03
70	GO:0016209: antioxidant activity	5.85E-03
71	GO:0004033: aldo-keto reductase (NADP) activity	5.85E-03
72	GO:0008173: RNA methyltransferase activity	6.71E-03
73	GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water	6.71E-03
74	GO:0008138: protein tyrosine/serine/threonine phosphatase activity	7.60E-03
75	GO:0030145: manganese ion binding	8.71E-03
76	GO:0015020: glucuronosyltransferase activity	9.53E-03
77	GO:0003993: acid phosphatase activity	9.99E-03
78	GO:0044183: protein binding involved in protein folding	1.06E-02
79	GO:0047372: acylglycerol lipase activity	1.06E-02
80	GO:0003691: double-stranded telomeric DNA binding	1.06E-02
81	GO:0016491: oxidoreductase activity	1.16E-02
82	GO:0004089: carbonate dehydratase activity	1.27E-02
83	GO:0004565: beta-galactosidase activity	1.27E-02
84	GO:0051537: 2 iron, 2 sulfur cluster binding	1.34E-02
85	GO:0008083: growth factor activity	1.38E-02
86	GO:0031409: pigment binding	1.62E-02
87	GO:0005509: calcium ion binding	1.79E-02
88	GO:0008408: 3'-5' exonuclease activity	2.00E-02
89	GO:0008810: cellulase activity	2.27E-02
90	GO:0003756: protein disulfide isomerase activity	2.41E-02
91	GO:0016787: hydrolase activity	2.93E-02
92	GO:0016829: lyase activity	3.22E-02
93	GO:0030170: pyridoxal phosphate binding	3.30E-02
94	GO:0005200: structural constituent of cytoskeleton	3.96E-02
95	GO:0008483: transaminase activity	3.96E-02
96	GO:0016413: O-acetyltransferase activity	4.13E-02
97	GO:0016168: chlorophyll binding	4.47E-02

Rank	GO Term	Adjusted P value
1	GO:0010368: chloroplast isoamylase complex	0.00E+00
2	GO:0042579: microbody	0.00E+00
3	GO:0017133: mitochondrial electron transfer flavoprotein complex	0.00E+00
4	GO:0043235: receptor complex	0.00E+00
5	GO:0005943: phosphatidylinositol 3-kinase complex, class IA	0.00E+00
6	GO:0009507: chloroplast	9.12E-49
7	GO:0009534: chloroplast thylakoid	1.41E-39
8	GO:0009535: chloroplast thylakoid membrane	3.71E-32
9	GO:0009570: chloroplast stroma	1.07E-30
10	GO:0009579: thylakoid	1.74E-23
11	GO:0009941: chloroplast envelope	4.95E-20
12	GO:0009543: chloroplast thylakoid lumen	1.84E-19
13	GO:0031977: thylakoid lumen	3.25E-14
14	GO:0030095: chloroplast photosystem II	5.92E-12
15	GO:0009538: photosystem I reaction center	8.23E-10
16	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	2.98E-09
17	GO:0010287: plastoglobule	7.65E-08
18	GO:0009654: photosystem II oxygen evolving complex	1.56E-07
19	GO:0019898: extrinsic component of membrane	1.26E-06
20	GO:0010319: stromule	5.96E-05
21	GO:0009295: nucleoid	5.96E-05
22	GO:0009508: plastid chromosome	6.73E-05
23	GO:0048046: apoplast	3.10E-04
24	GO:0005787: signal peptidase complex	3.29E-04
25	GO:0031361: integral component of thylakoid membrane	3.29E-04
26	GO:0000791: euchromatin	3.29E-04
27	GO:0030870: Mre11 complex	7.18E-04
28	GO:0000427: plastid-encoded plastid RNA polymerase complex	7.18E-04
29	GO:0005840: ribosome	7.55E-04
30	GO:0010007: magnesium chelatase complex	1.16E-03
31	GO:0033281: TAT protein transport complex	1.16E-03
32	GO:0005960: glycine cleavage complex	1.67E-03
33	GO:0042651: thylakoid membrane	1.80E-03
34	GO:0015935: small ribosomal subunit	1.97E-03
35	GO:0000795: synaptonemal complex	2.87E-03
36	GO:0009523: photosystem II	3.72E-03
37	GO:0016272: prefoldin complex	4.26E-03
38	GO:0009840: chloroplastic endopeptidase Clp complex	4.26E-03
39	GO:0009706: chloroplast inner membrane	4.40E-03
40	GO:0009533: chloroplast stromal thylakoid	5.03E-03
41	GO:0031305: integral component of mitochondrial inner membrane	5.85E-03
42	GO:0009501: amyloplast	5.85E-03
43	GO:0000783: nuclear telomere cap complex	6.71E-03
44	GO:0005763: mitochondrial small ribosomal subunit	7.60E-03
45	GO:0045298: tubulin complex	7.60E-03
46	GO:0005740: mitochondrial envelope	9.53E-03
47	GO:0030076: light-harvesting complex	1.50E-02
48	GO:0009532: plastid stroma	2.00E-02
49	GO:0009522: photosystem I	3.00E-02
50	GO:0009504: cell plate	3.15E-02
51	GO:0000785: chromatin	3.47E-02