co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT4G22770

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0090706: specification of plant organ position	0.00E+00
2	GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate	0.00E+00
3	GO:0009715: chalcone biosynthetic process	0.00E+00
4	GO:0046838: phosphorylated carbohydrate dephosphorylation	0.00E+00
5	GO:2000042: negative regulation of double-strand break repair via homologous recombination	0.00E+00
6	GO:0007172: signal complex assembly	0.00E+00
7	GO:0006114: glycerol biosynthetic process	0.00E+00
8	GO:0018023: peptidyl-lysine trimethylation	0.00E+00
9	GO:0080127: fruit septum development	0.00E+00
10	GO:0010966: regulation of phosphate transport	0.00E+00
11	GO:0006399: tRNA metabolic process	0.00E+00
12	GO:0015979: photosynthesis	1.88E-09
13	GO:0009773: photosynthetic electron transport in photosystem I	7.68E-07
14	GO:0018026: peptidyl-lysine monomethylation	4.22E-06
15	GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly	3.35E-05
16	GO:0042549: photosystem II stabilization	1.37E-04
17	GO:0061077: chaperone-mediated protein folding	1.51E-04
18	GO:1901259: chloroplast rRNA processing	1.88E-04
19	GO:0006419: alanyl-tRNA aminoacylation	3.04E-04
20	GO:0010493: Lewis a epitope biosynthetic process	3.04E-04
21	GO:0000476: maturation of 4.5S rRNA	3.04E-04
22	GO:0000967: rRNA 5'-end processing	3.04E-04
23	GO:0043953: protein transport by the Tat complex	3.04E-04
24	GO:0042371: vitamin K biosynthetic process	3.04E-04
25	GO:0065002: intracellular protein transmembrane transport	3.04E-04
26	GO:0043686: co-translational protein modification	3.04E-04
27	GO:0046167: glycerol-3-phosphate biosynthetic process	3.04E-04
28	GO:0043007: maintenance of rDNA	3.04E-04
29	GO:0010450: inflorescence meristem growth	3.04E-04
30	GO:0010205: photoinhibition	5.40E-04
31	GO:0010027: thylakoid membrane organization	6.42E-04
32	GO:0035304: regulation of protein dephosphorylation	6.66E-04
33	GO:0009629: response to gravity	6.66E-04
34	GO:0006650: glycerophospholipid metabolic process	6.66E-04
35	GO:0006432: phenylalanyl-tRNA aminoacylation	6.66E-04
36	GO:0080181: lateral root branching	6.66E-04
37	GO:0034470: ncRNA processing	6.66E-04
38	GO:0019684: photosynthesis, light reaction	7.28E-04
39	GO:0015995: chlorophyll biosynthetic process	7.89E-04
40	GO:0018298: protein-chromophore linkage	8.97E-04
41	GO:0046168: glycerol-3-phosphate catabolic process	1.08E-03
42	GO:0009405: pathogenesis	1.08E-03
43	GO:0006954: inflammatory response	1.08E-03
44	GO:0071398: cellular response to fatty acid	1.08E-03
45	GO:0005977: glycogen metabolic process	1.08E-03
46	GO:0045165: cell fate commitment	1.08E-03
47	GO:0009637: response to blue light	1.20E-03
48	GO:0010239: chloroplast mRNA processing	1.55E-03
49	GO:0006072: glycerol-3-phosphate metabolic process	1.55E-03
50	GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity	1.55E-03
51	GO:1901332: negative regulation of lateral root development	1.55E-03
52	GO:2001141: regulation of RNA biosynthetic process	1.55E-03
53	GO:0006020: inositol metabolic process	1.55E-03
54	GO:0009768: photosynthesis, light harvesting in photosystem I	1.60E-03
55	GO:0010114: response to red light	1.66E-03
56	GO:0019915: lipid storage	1.76E-03
57	GO:0009765: photosynthesis, light harvesting	2.07E-03
58	GO:0015994: chlorophyll metabolic process	2.07E-03
59	GO:0022622: root system development	2.07E-03
60	GO:0006021: inositol biosynthetic process	2.07E-03
61	GO:0010021: amylopectin biosynthetic process	2.07E-03
62	GO:0010158: abaxial cell fate specification	2.65E-03
63	GO:0016558: protein import into peroxisome matrix	2.65E-03
64	GO:0006564: L-serine biosynthetic process	2.65E-03
65	GO:0010236: plastoquinone biosynthetic process	2.65E-03
66	GO:0031365: N-terminal protein amino acid modification	2.65E-03
67	GO:1902183: regulation of shoot apical meristem development	2.65E-03
68	GO:0009658: chloroplast organization	2.92E-03
69	GO:0042793: transcription from plastid promoter	3.27E-03
70	GO:0010190: cytochrome b6f complex assembly	3.27E-03
71	GO:0046855: inositol phosphate dephosphorylation	3.27E-03
72	GO:0003006: developmental process involved in reproduction	3.27E-03
73	GO:0032502: developmental process	3.79E-03
74	GO:0006810: transport	3.88E-03
75	GO:0042026: protein refolding	3.93E-03
76	GO:0042372: phylloquinone biosynthetic process	3.93E-03
77	GO:0006458: 'de novo' protein folding	3.93E-03
78	GO:0030488: tRNA methylation	3.93E-03
79	GO:0005975: carbohydrate metabolic process	4.17E-03
80	GO:0009772: photosynthetic electron transport in photosystem II	4.64E-03
81	GO:0009769: photosynthesis, light harvesting in photosystem II	4.64E-03
82	GO:1900057: positive regulation of leaf senescence	4.64E-03
83	GO:0009645: response to low light intensity stimulus	4.64E-03
84	GO:0006400: tRNA modification	4.64E-03
85	GO:0032880: regulation of protein localization	4.64E-03
86	GO:0030091: protein repair	5.39E-03
87	GO:0031540: regulation of anthocyanin biosynthetic process	5.39E-03
88	GO:0000105: histidine biosynthetic process	5.39E-03
89	GO:0016559: peroxisome fission	5.39E-03
90	GO:0071482: cellular response to light stimulus	6.18E-03
91	GO:0017004: cytochrome complex assembly	6.18E-03
92	GO:0010093: specification of floral organ identity	6.18E-03
93	GO:0016311: dephosphorylation	6.36E-03
94	GO:0032259: methylation	6.87E-03
95	GO:0048507: meristem development	7.01E-03
96	GO:0010206: photosystem II repair	7.01E-03
97	GO:2000024: regulation of leaf development	7.01E-03
98	GO:0010218: response to far red light	7.38E-03
99	GO:0006779: porphyrin-containing compound biosynthetic process	7.87E-03
100	GO:0006782: protoporphyrinogen IX biosynthetic process	8.77E-03
101	GO:0031627: telomeric loop formation	8.77E-03
102	GO:0009089: lysine biosynthetic process via diaminopimelate	9.71E-03
103	GO:0072593: reactive oxygen species metabolic process	9.71E-03
104	GO:0009073: aromatic amino acid family biosynthetic process	9.71E-03
105	GO:0006352: DNA-templated transcription, initiation	9.71E-03
106	GO:0006790: sulfur compound metabolic process	1.07E-02
107	GO:0005983: starch catabolic process	1.07E-02
108	GO:0010582: floral meristem determinacy	1.07E-02
109	GO:0071365: cellular response to auxin stimulus	1.07E-02
110	GO:0055114: oxidation-reduction process	1.10E-02
111	GO:2000012: regulation of auxin polar transport	1.17E-02
112	GO:0010628: positive regulation of gene expression	1.17E-02
113	GO:0018107: peptidyl-threonine phosphorylation	1.17E-02
114	GO:0048467: gynoecium development	1.27E-02
115	GO:0010020: chloroplast fission	1.27E-02
116	GO:0009933: meristem structural organization	1.27E-02
117	GO:0010207: photosystem II assembly	1.27E-02
118	GO:0009266: response to temperature stimulus	1.27E-02
119	GO:0009934: regulation of meristem structural organization	1.27E-02
120	GO:0006302: double-strand break repair	1.27E-02
121	GO:0019853: L-ascorbic acid biosynthetic process	1.38E-02
122	GO:0010030: positive regulation of seed germination	1.38E-02
123	GO:0046854: phosphatidylinositol phosphorylation	1.38E-02
124	GO:0000162: tryptophan biosynthetic process	1.49E-02
125	GO:0006636: unsaturated fatty acid biosynthetic process	1.49E-02
126	GO:0009944: polarity specification of adaxial/abaxial axis	1.60E-02
127	GO:0009909: regulation of flower development	1.64E-02
128	GO:0019953: sexual reproduction	1.72E-02
129	GO:0009269: response to desiccation	1.84E-02
130	GO:0051321: meiotic cell cycle	1.84E-02
131	GO:0048511: rhythmic process	1.84E-02
132	GO:0019748: secondary metabolic process	1.96E-02
133	GO:0009693: ethylene biosynthetic process	2.09E-02
134	GO:0009686: gibberellin biosynthetic process	2.09E-02
135	GO:0071369: cellular response to ethylene stimulus	2.09E-02
136	GO:0006012: galactose metabolic process	2.09E-02
137	GO:0009789: positive regulation of abscisic acid-activated signaling pathway	2.35E-02
138	GO:0070417: cellular response to cold	2.35E-02
139	GO:0008284: positive regulation of cell proliferation	2.35E-02
140	GO:0042631: cellular response to water deprivation	2.48E-02
141	GO:0009958: positive gravitropism	2.62E-02
142	GO:0010154: fruit development	2.62E-02
143	GO:0006520: cellular amino acid metabolic process	2.62E-02
144	GO:0042752: regulation of circadian rhythm	2.76E-02
145	GO:0019252: starch biosynthetic process	2.90E-02
146	GO:0008654: phospholipid biosynthetic process	2.90E-02
147	GO:0055072: iron ion homeostasis	2.90E-02
148	GO:0071554: cell wall organization or biogenesis	3.04E-02
149	GO:0006635: fatty acid beta-oxidation	3.04E-02
150	GO:1901657: glycosyl compound metabolic process	3.33E-02
151	GO:0009567: double fertilization forming a zygote and endosperm	3.49E-02
152	GO:0009627: systemic acquired resistance	4.27E-02
153	GO:0009817: defense response to fungus, incompatible interaction	4.77E-02
154	GO:0009813: flavonoid biosynthetic process	4.94E-02
155	GO:0006979: response to oxidative stress	4.95E-02

Rank	GO Term	Adjusted P value
1	GO:0000121: glycerol-1-phosphatase activity	0.00E+00
2	GO:0010349: L-galactose dehydrogenase activity	0.00E+00
3	GO:0046406: magnesium protoporphyrin IX methyltransferase activity	0.00E+00
4	GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity	0.00E+00
5	GO:0016210: naringenin-chalcone synthase activity	0.00E+00
6	GO:0016730: oxidoreductase activity, acting on iron-sulfur proteins as donors	0.00E+00
7	GO:0042623: ATPase activity, coupled	0.00E+00
8	GO:0036361: racemase activity, acting on amino acids and derivatives	0.00E+00
9	GO:0016855: racemase and epimerase activity, acting on amino acids and derivatives	0.00E+00
10	GO:0009899: ent-kaurene synthase activity	0.00E+00
11	GO:0003949: 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase activity	0.00E+00
12	GO:0043136: glycerol-3-phosphatase activity	0.00E+00
13	GO:0016279: protein-lysine N-methyltransferase activity	6.01E-05
14	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	6.01E-05
15	GO:0005528: FK506 binding	1.13E-04
16	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	3.02E-04
17	GO:0046920: alpha-(1->3)-fucosyltransferase activity	3.04E-04
18	GO:0050308: sugar-phosphatase activity	3.04E-04
19	GO:0004813: alanine-tRNA ligase activity	3.04E-04
20	GO:0010242: oxygen evolving activity	3.04E-04
21	GO:0047911: galacturan 1,4-alpha-galacturonidase activity	3.04E-04
22	GO:0042586: peptide deformylase activity	3.04E-04
23	GO:0019203: carbohydrate phosphatase activity	3.04E-04
24	GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity	3.04E-04
25	GO:0042286: glutamate-1-semialdehyde 2,1-aminomutase activity	3.04E-04
26	GO:0004033: aldo-keto reductase (NADP) activity	3.09E-04
27	GO:0052832: inositol monophosphate 3-phosphatase activity	6.66E-04
28	GO:0008934: inositol monophosphate 1-phosphatase activity	6.66E-04
29	GO:0052833: inositol monophosphate 4-phosphatase activity	6.66E-04
30	GO:0004826: phenylalanine-tRNA ligase activity	6.66E-04
31	GO:0019156: isoamylase activity	6.66E-04
32	GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase	6.66E-04
33	GO:0047746: chlorophyllase activity	6.66E-04
34	GO:0042389: omega-3 fatty acid desaturase activity	6.66E-04
35	GO:0009977: proton motive force dependent protein transmembrane transporter activity	6.66E-04
36	GO:0004617: phosphoglycerate dehydrogenase activity	6.66E-04
37	GO:0000049: tRNA binding	8.31E-04
38	GO:0003913: DNA photolyase activity	1.08E-03
39	GO:0090729: toxin activity	1.08E-03
40	GO:0004367: glycerol-3-phosphate dehydrogenase [NAD+] activity	1.08E-03
41	GO:0031409: pigment binding	1.31E-03
42	GO:0004742: dihydrolipoyllysine-residue acetyltransferase activity	1.55E-03
43	GO:0016851: magnesium chelatase activity	1.55E-03
44	GO:0004045: aminoacyl-tRNA hydrolase activity	2.07E-03
45	GO:0080032: methyl jasmonate esterase activity	2.07E-03
46	GO:0016987: sigma factor activity	2.07E-03
47	GO:0004659: prenyltransferase activity	2.07E-03
48	GO:0001053: plastid sigma factor activity	2.07E-03
49	GO:0042578: phosphoric ester hydrolase activity	3.27E-03
50	GO:0004556: alpha-amylase activity	3.27E-03
51	GO:0004462: lactoylglutathione lyase activity	3.27E-03
52	GO:2001070: starch binding	3.27E-03
53	GO:0080030: methyl indole-3-acetate esterase activity	3.27E-03
54	GO:0048038: quinone binding	3.55E-03
55	GO:0051082: unfolded protein binding	3.79E-03
56	GO:0008195: phosphatidate phosphatase activity	3.93E-03
57	GO:0033743: peptide-methionine (R)-S-oxide reductase activity	3.93E-03
58	GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity	3.93E-03
59	GO:0009881: photoreceptor activity	4.64E-03
60	GO:0016597: amino acid binding	4.84E-03
61	GO:0016168: chlorophyll binding	5.42E-03
62	GO:0047196: long-chain-alcohol O-fatty-acyltransferase activity	6.18E-03
63	GO:0103095: wax ester synthase activity	6.18E-03
64	GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water	6.18E-03
65	GO:0008173: RNA methyltransferase activity	6.18E-03
66	GO:0008417: fucosyltransferase activity	7.01E-03
67	GO:0008138: protein tyrosine/serine/threonine phosphatase activity	7.01E-03
68	GO:0009815: 1-aminocyclopropane-1-carboxylate oxidase activity	7.01E-03
69	GO:0030145: manganese ion binding	7.74E-03
70	GO:0015020: glucuronosyltransferase activity	8.77E-03
71	GO:0003993: acid phosphatase activity	8.87E-03
72	GO:0003691: double-stranded telomeric DNA binding	9.71E-03
73	GO:0044183: protein binding involved in protein folding	9.71E-03
74	GO:0042802: identical protein binding	1.03E-02
75	GO:0004521: endoribonuclease activity	1.07E-02
76	GO:0031072: heat shock protein binding	1.17E-02
77	GO:0043621: protein self-association	1.19E-02
78	GO:0051537: 2 iron, 2 sulfur cluster binding	1.19E-02
79	GO:0008083: growth factor activity	1.27E-02
80	GO:0008168: methyltransferase activity	1.27E-02
81	GO:0008266: poly(U) RNA binding	1.27E-02
82	GO:0000287: magnesium ion binding	1.30E-02
83	GO:0051287: NAD binding	1.33E-02
84	GO:0016788: hydrolase activity, acting on ester bonds	1.36E-02
85	GO:0031418: L-ascorbic acid binding	1.60E-02
86	GO:0033612: receptor serine/threonine kinase binding	1.84E-02
87	GO:0008408: 3'-5' exonuclease activity	1.84E-02
88	GO:0003756: protein disulfide isomerase activity	2.22E-02
89	GO:0008026: ATP-dependent helicase activity	2.24E-02
90	GO:0019843: rRNA binding	2.65E-02
91	GO:0008483: transaminase activity	3.64E-02
92	GO:0004702: signal transducer, downstream of receptor, with serine/threonine kinase activity	3.64E-02
93	GO:0016413: O-acetyltransferase activity	3.79E-02
94	GO:0008017: microtubule binding	3.82E-02
95	GO:0008375: acetylglucosaminyltransferase activity	4.27E-02
96	GO:0102483: scopolin beta-glucosidase activity	4.44E-02

Rank	GO Term	Adjusted P value
1	GO:0010368: chloroplast isoamylase complex	0.00E+00
2	GO:0043235: receptor complex	0.00E+00
3	GO:0009507: chloroplast	3.92E-30
4	GO:0009535: chloroplast thylakoid membrane	1.46E-19
5	GO:0009570: chloroplast stroma	4.01E-13
6	GO:0009534: chloroplast thylakoid	1.55E-12
7	GO:0009579: thylakoid	3.45E-08
8	GO:0010287: plastoglobule	4.80E-08
9	GO:0009941: chloroplast envelope	9.01E-08
10	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	2.37E-07
11	GO:0009543: chloroplast thylakoid lumen	1.09E-06
12	GO:0030095: chloroplast photosystem II	1.94E-06
13	GO:0009538: photosystem I reaction center	8.17E-06
14	GO:0009654: photosystem II oxygen evolving complex	1.31E-04
15	GO:0000791: euchromatin	3.04E-04
16	GO:0031361: integral component of thylakoid membrane	3.04E-04
17	GO:0019898: extrinsic component of membrane	3.65E-04
18	GO:0030870: Mre11 complex	6.66E-04
19	GO:0000427: plastid-encoded plastid RNA polymerase complex	6.66E-04
20	GO:0010007: magnesium chelatase complex	1.08E-03
21	GO:0033281: TAT protein transport complex	1.08E-03
22	GO:0030076: light-harvesting complex	1.18E-03
23	GO:0031977: thylakoid lumen	1.49E-03
24	GO:0042646: plastid nucleoid	1.55E-03
25	GO:0009331: glycerol-3-phosphate dehydrogenase complex	1.55E-03
26	GO:0009517: PSII associated light-harvesting complex II	2.07E-03
27	GO:0000795: synaptonemal complex	2.65E-03
28	GO:0009522: photosystem I	3.09E-03
29	GO:0009523: photosystem II	3.31E-03
30	GO:0016272: prefoldin complex	3.93E-03
31	GO:0031969: chloroplast membrane	4.06E-03
32	GO:0009533: chloroplast stromal thylakoid	4.64E-03
33	GO:0000783: nuclear telomere cap complex	6.18E-03
34	GO:0042644: chloroplast nucleoid	7.01E-03
35	GO:0008180: COP9 signalosome	7.01E-03
36	GO:0055028: cortical microtubule	8.77E-03
37	GO:0012511: monolayer-surrounded lipid storage body	9.71E-03
38	GO:0009508: plastid chromosome	1.17E-02
39	GO:0000785: chromatin	3.19E-02
40	GO:0032580: Golgi cisterna membrane	3.49E-02
41	GO:0009295: nucleoid	3.64E-02
42	GO:0005778: peroxisomal membrane	3.64E-02
43	GO:0030529: intracellular ribonucleoprotein complex	3.95E-02
44	GO:0009707: chloroplast outer membrane	4.77E-02
45	GO:0019005: SCF ubiquitin ligase complex	4.77E-02